Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000681

Physical Location & Seq

Genomic Coordinates Reverse (-)

63777178 .. 63780943

Gene Structure 3766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51583

Sequence Viewer

CDS Protein Promoter (2k)

Length: 174 bp

ATGGAGTGGAGTCGGAAGAAATCATACCAACTTCAATGGCATAGGTTCTCTCAAGAAGAATGTGCCAACATTGATACAGTTATTGGCATTGAGAAAAAAAAAACTCAAAACCAAGTCAAGCCATATGGTCTAGATAATGAAACTATTGGAGAGCGGATAAAGATCCAAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009987 GO:0016043 GO:0022402 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

57

Amino Acids

6.84

Weight (kDa)

8.85

Isoelectric Point (pI)

40.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840
fragaria_vesca	FvH4_6g53040 FvH4_6g53040 FvH4_6g53050 FvH4_6g53050
malus_domestica	MD09G1015100.v1.1 MD09G1015200.v1.1 MD17G1015200.v1.1
prunus_persica	Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1
pyrus_communis	pycom111g01230 pycom17g01230 pycom17g01240
rosa_chinensis	RchiOBHm_Chr2g0146031 RchiOBHm_Chr2g0172041 RchiOBHm_Chr2g0172061 RchiOBHm_Chr2g0172121 RchiOBHm_Chr2g0172131 RchiOBHm_Chr2g0172161 RchiOBHm_Chr2g0173841 RchiOBHm_Chr2g0174821 RchiOBHm_Chr2g0174831
rosa_laevigata	RLG00000022078 RLG00000022079 RLG00000022228 RLG00000022298 RLG00000022299 RLG00000032768
rosa_multiflora	Rmu_co8137076.1_g000001 Rmu_sc0001716.1_g000038 Rmu_sc0003188.1_g000021 Rmu_sc0015734.1_g000001 Rmu_sc0038259.1_g000001 Rmu_sc0038259.1_g000002 Rmu_sc0040737.1_g000001 Rmu_sc0041600.1_g000001 Rmu_ssc0000252.1_g000045
rosa_roxburghii	Rroxscaffold_2G00077660 Rroxscaffold_2G00080120 Rroxscaffold_2G00080130 Rroxscaffold_2G00080290
rosa_rugosa	Rorug02G0579500 Rorug02G0579600
rosa_samantha	Rh2AG632100 Rh2AG632200 Rh2AG656700 Rh2AG656800 Rh2AG660800 Rh2AG660900 Rh2BG645600 Rh2BG645700 Rh2BG667700 Rh2BG667800 Rh2BG672200 Rh2BG672300 Rh2CG627800 Rh2CG627900 Rh2CG635000 Rh2CG635100 Rh2DG658600 Rh2DG678300 Rh2DG685300 Rh2DG685400 Rh6AG066100 Rh6BG058900
rosa_wichuraiana	Rw2G053570 Rw2G054150 Rw2G054160 Rw6G005810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	154
AciI	CCGC	1 cut(s)	154
AclWI	GGATC	1 cut(s)	157
AgsI	TTSAA	1 cut(s)	35
AlwI	GGATC	1 cut(s)	157
BarI	GAAGNNNNNNTAC	2 cut(s)	8, 40
BfaI	CTAG	1 cut(s)	131
BpuEI	CTTGAG	1 cut(s)	36
BsaBI	GATNNNNATC	1 cut(s)	161
Bse8I	GATNNNNATC	1 cut(s)	161
BseJI	GATNNNNATC	1 cut(s)	161
Bsp143I	GATC	1 cut(s)	162
BspACI	CCGC	1 cut(s)	154
BspPI	GGATC	1 cut(s)	157
BsrBI	CCGCTC	1 cut(s)	154
BssMI	GATC	1 cut(s)	162
Bst4CI	ACNGT	1 cut(s)	79
BstKTI	GATC	1 cut(s)	165
BstMBI	GATC	1 cut(s)	162
BstX2I	RGATCY	1 cut(s)	162
BstYI	RGATCY	1 cut(s)	162
CviJI	RGCY	1 cut(s)	121
CviKI_1	RGCY	1 cut(s)	121
DpnI	GATC	1 cut(s)	164
DpnII	GATC	1 cut(s)	162
FaiI	YATR	5 cut(s)	25, 42, 124, 126, 172
FauNDI	CATATG	1 cut(s)	124
FspBI	CTAG	1 cut(s)	131
HinfI	GANTC	1 cut(s)	10
Hpy188I	TCNGA	1 cut(s)	15
Hpy188III	TCNNGA	2 cut(s)	53, 131
HpyCH4III	ACNGT	1 cut(s)	79
Kzo9I	GATC	1 cut(s)	162
MaeI	CTAG	1 cut(s)	131
MalI	GATC	1 cut(s)	164
MbiI	CCGCTC	1 cut(s)	154
MboI	GATC	1 cut(s)	162
MboII	GAAGA	2 cut(s)	28, 68
MflI	RGATCY	1 cut(s)	162
MlyI	GAGTC	1 cut(s)	19
NdeI	CATATG	1 cut(s)	124
NdeII	GATC	1 cut(s)	162
PleI	GAGTC	1 cut(s)	18
PpsI	GAGTC	1 cut(s)	18
PsuI	RGATCY	1 cut(s)	162
Sau3AI	GATC	1 cut(s)	162
SchI	GAGTC	1 cut(s)	19
SetI	ASST	1 cut(s)	47
SgeI	CNNG	4 cut(s)	65, 125, 130, 143
SmlI	CTYRAG	1 cut(s)	51
SmoI	CTYRAG	1 cut(s)	51
SsiI	CCGC	1 cut(s)	154
SspMI	CTAG	1 cut(s)	131
TaaI	ACNGT	1 cut(s)	79
TspDTI	ATGAA	1 cut(s)	153
XbaI	TCTAGA	1 cut(s)	130
XspI	CTAG	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.