Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000252.1

Orthogroup ID

OG0000681

Physical Location & Seq

Genomic Coordinates Forward (+)

261126 .. 263708

Gene Structure 2583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000252.1_g000045.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

atggactttggtatggagttaataacatcgagtaagggagctgactcaaaagaaatcgtagagcagcttcaatggaatagattctctcaagaagaatatgctgacattgatacatttattggcattgagaaaggacctcaaaaccaagttaagcaatatggtgaagataatgaaaccactggagagcagatacagactccagatataccactgcctgaagatggaattcaggaagatggtcagaagactcagaaccatgagatctttatgggaataatagagaaccttcctgccataatccttgggcttgatgtgctttgtggagccaagaaacctcaagaacttttttgttcatatggagaagagaatcataatgatgaagagccgactaagttacaggacatgattgcaccagataccataaaaagtattctggaagaagatccagatcccctctcagttgcatatgatggcagtcctgatgccaagcagccatatactctaggtgttactacaccaaaattgacgtctgttcccagaccagcttccaagaagtcggctcggatttctaggaaaagaaactgtgtctttgatgatatagtagtgctgcctaatgaaaaggtggcgaggtacttgcacaggcactttacagtttgcaacagttgtagagaggaagaagtgaacttgttggaggttgcagaacgaagaaccaagaaagaaagtgcaatgctattctatgagacactggtgatgaaaactagagggtttgtggatgtgaagcgagctgatcgctattctattctggaaacgtcccaaatgggagcaaatgtggggagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009987 GO:0016043 GO:0022402 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

279

Amino Acids

31.51

Weight (kDa)

4.79

Isoelectric Point (pI)

46.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840
fragaria_vesca	FvH4_6g53040 FvH4_6g53040 FvH4_6g53050 FvH4_6g53050
malus_domestica	MD09G1015100.v1.1 MD09G1015200.v1.1 MD17G1015200.v1.1
prunus_persica	Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1
pyrus_communis	pycom111g01230 pycom17g01230 pycom17g01240
rosa_chinensis	RchiOBHm_Chr2g0146031 RchiOBHm_Chr2g0172041 RchiOBHm_Chr2g0172061 RchiOBHm_Chr2g0172121 RchiOBHm_Chr2g0172131 RchiOBHm_Chr2g0172161 RchiOBHm_Chr2g0173841 RchiOBHm_Chr2g0174821 RchiOBHm_Chr2g0174831
rosa_laevigata	RLG00000022078 RLG00000022079 RLG00000022228 RLG00000022298 RLG00000022299 RLG00000032768
rosa_multiflora	Rmu_co8137076.1_g000001 Rmu_sc0001716.1_g000038 Rmu_sc0003188.1_g000021 Rmu_sc0015734.1_g000001 Rmu_sc0038259.1_g000001 Rmu_sc0038259.1_g000002 Rmu_sc0040737.1_g000001 Rmu_sc0041600.1_g000001 Rmu_ssc0000252.1_g000045
rosa_roxburghii	Rroxscaffold_2G00077660 Rroxscaffold_2G00080120 Rroxscaffold_2G00080130 Rroxscaffold_2G00080290
rosa_rugosa	Rorug02G0579500 Rorug02G0579600
rosa_samantha	Rh2AG632100 Rh2AG632200 Rh2AG656700 Rh2AG656800 Rh2AG660800 Rh2AG660900 Rh2BG645600 Rh2BG645700 Rh2BG667700 Rh2BG667800 Rh2BG672200 Rh2BG672300 Rh2CG627800 Rh2CG627900 Rh2CG635000 Rh2CG635100 Rh2DG658600 Rh2DG678300 Rh2DG685300 Rh2DG685400 Rh6AG066100 Rh6BG058900
rosa_wichuraiana	Rw2G053570 Rw2G054150 Rw2G054160 Rw6G005810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	530
AclWI	GGATC	2 cut(s)	437, 443
AcsI	RAATTY	1 cut(s)	225
AcuI	CTGAAG	1 cut(s)	237
AcyI	GRCGYC	1 cut(s)	527
AfaI	GTAC	1 cut(s)	632
AfiI	CCNNNNNNNGG	1 cut(s)	221
AgsI	TTSAA	1 cut(s)	71
AluBI	AGCT	4 cut(s)	41, 67, 545, 785
AluI	AGCT	4 cut(s)	41, 67, 545, 785
Alw26I	GTCTC	1 cut(s)	734
AlwI	GGATC	2 cut(s)	437, 443
ApeKI	GCWGC	3 cut(s)	64, 490, 607
ApoI	RAATTY	1 cut(s)	225
ArsI	GACNNNNNNTTYG	2 cut(s)	512, 544
Asp700I	GAANNNNTTC	1 cut(s)	80
AspS9I	GGNCC	1 cut(s)	134
AsuHPI	GGTGA	2 cut(s)	173, 760
AvaII	GGWCC	1 cut(s)	134
BarI	GAAGNNNNNNTAC	2 cut(s)	51, 83
BbsI	GAAGAC	1 cut(s)	251
BbvI	GCAGC	3 cut(s)	76, 502, 594
BccI	CCATC	3 cut(s)	215, 230, 464
BcgI	CGANNNNNNTGC	2 cut(s)	616, 650
BcoDI	GTCTC	1 cut(s)	734
BfaI	CTAG	3 cut(s)	503, 570, 759
BglII	AGATCT	1 cut(s)	261
BisI	GCNGC	3 cut(s)	65, 491, 608
BlsI	GCNGC	3 cut(s)	66, 492, 609
Bme18I	GGWCC	1 cut(s)	134
BmgT120I	GGNCC	1 cut(s)	134
BmiI	GGNNCC	1 cut(s)	325
BmsI	GCATC	1 cut(s)	472
BpiI	GAAGAC	1 cut(s)	251
BpmI	CTGGAG	2 cut(s)	183, 201
BpuEI	CTTGAG	2 cut(s)	72, 321
BsaBI	GATNNNNATC	1 cut(s)	447
BsaHI	GRCGYC	1 cut(s)	527
BsaJI	CCNNGG	1 cut(s)	301
BsaXI	ACNNNNNCTCC	1 cut(s)	813
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse1I	ACTGG	2 cut(s)	184, 750
Bse3DI	GCAATG	1 cut(s)	732
Bse8I	GATNNNNATC	1 cut(s)	447
BseDI	CCNNGG	1 cut(s)	301
BseGI	GGATG	1 cut(s)	778
BseJI	GATNNNNATC	1 cut(s)	447
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseMI	GCAATG	1 cut(s)	732
BseMII	CTCAG	2 cut(s)	263, 471
BseNI	ACTGG	2 cut(s)	184, 750
BseXI	GCAGC	3 cut(s)	76, 502, 594
BslFI	GGGAC	1 cut(s)	796
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmAI	GTCTC	1 cut(s)	734
BsmFI	GGGAC	1 cut(s)	796
Bsp143I	GATC	4 cut(s)	261, 442, 448, 787
BspCNI	CTCAG	2 cut(s)	262, 470
BspLI	GGNNCC	1 cut(s)	325
BspPI	GGATC	2 cut(s)	437, 443
BspQI	GCTCTTC	1 cut(s)	375
BsrDI	GCAATG	1 cut(s)	732
BsrI	ACTGG	2 cut(s)	184, 750
BssECI	CCNNGG	1 cut(s)	301
BssMI	GATC	4 cut(s)	261, 442, 448, 787
BssNI	GRCGYC	1 cut(s)	527
BssT1I	CCWWGG	1 cut(s)	301
Bst4CI	ACNGT	3 cut(s)	584, 652, 662
Bst6I	CTCTTC	2 cut(s)	357, 375
BstACI	GRCGYC	1 cut(s)	527
BstC8I	GCNNGC	1 cut(s)	783
BstDEI	CTNAG	3 cut(s)	249, 390, 457
BstF5I	GGATG	1 cut(s)	778
BstKTI	GATC	4 cut(s)	264, 445, 451, 790
BstMAI	GTCTC	1 cut(s)	734
BstMBI	GATC	4 cut(s)	261, 442, 448, 787
BstMWI	GCNNNNNNNGC	1 cut(s)	313
BstV1I	GCAGC	3 cut(s)	76, 502, 594
BstV2I	GAAGAC	1 cut(s)	251
BstX2I	RGATCY	3 cut(s)	261, 442, 448
BstYI	RGATCY	3 cut(s)	261, 442, 448
BtsCI	GGATG	1 cut(s)	778
BtsI	GCAGTG	1 cut(s)	209
BtsIMutI	CAGTG	3 cut(s)	177, 209, 743
Cac8I	GCNNGC	1 cut(s)	783
Cfr13I	GGNCC	1 cut(s)	134
Csp6I	GTAC	1 cut(s)	631
CviAII	CATG	2 cut(s)	257, 403
CviJI	RGCY	9 cut(s)	41, 67, 307, 326, 385, 493, 545, 560, 785
CviKI_1	RGCY	9 cut(s)	41, 67, 307, 326, 385, 493, 545, 560, 785
CviQI	GTAC	1 cut(s)	631
DdeI	CTNAG	3 cut(s)	249, 390, 457
DpnI	GATC	4 cut(s)	263, 444, 450, 789
DpnII	GATC	4 cut(s)	261, 442, 448, 787
Eam1104I	CTCTTC	2 cut(s)	357, 375
EarI	CTCTTC	2 cut(s)	357, 375
Eco130I	CCWWGG	1 cut(s)	301
Eco47I	GGWCC	1 cut(s)	134
Eco57I	CTGAAG	1 cut(s)	237
EcoO109I	RGGNCCY	1 cut(s)	134
EcoRI	GAATTC	1 cut(s)	225
EcoT14I	CCWWGG	1 cut(s)	301
ErhI	CCWWGG	1 cut(s)	301
FaeI	CATG	2 cut(s)	260, 406
FaqI	GGGAC	1 cut(s)	796
FatI	CATG	2 cut(s)	256, 402
FauNDI	CATATG	2 cut(s)	355, 466
Fnu4HI	GCNGC	3 cut(s)	65, 491, 608
FokI	GGATG	1 cut(s)	785
Fsp4HI	GCNGC	3 cut(s)	65, 491, 608
FspBI	CTAG	3 cut(s)	503, 570, 759
GluI	GCNGC	3 cut(s)	65, 491, 608
GsuI	CTGGAG	2 cut(s)	183, 201
Hin1I	GRCGYC	1 cut(s)	527
Hin1II	CATG	2 cut(s)	260, 406
HinfI	GANTC	5 cut(s)	44, 81, 196, 247, 367
HphI	GGTGA	2 cut(s)	173, 760
Hpy166II	GTNNAC	1 cut(s)	682
Hpy188I	TCNGA	3 cut(s)	243, 252, 564
Hpy188III	TCNNGA	8 cut(s)	89, 200, 230, 338, 434, 446, 479, 803
Hpy8I	GTNNAC	1 cut(s)	682
HpyAV	CCTTC	1 cut(s)	296
HpyCH4III	ACNGT	3 cut(s)	584, 652, 662
HpyCH4IV	ACGT	2 cut(s)	527, 809
HpyCH4V	TGCA	6 cut(s)	410, 464, 637, 657, 698, 725
HpyF10VI	GCNNNNNNNGC	1 cut(s)	313
HpyF3I	CTNAG	3 cut(s)	249, 390, 457
HpySE526I	ACGT	2 cut(s)	527, 809
Hsp92I	GRCGYC	1 cut(s)	527
Hsp92II	CATG	2 cut(s)	260, 406
Kzo9I	GATC	4 cut(s)	261, 442, 448, 787
LguI	GCTCTTC	1 cut(s)	375
LmnI	GCTCC	3 cut(s)	38, 323, 821
Lsp1109I	GCAGC	3 cut(s)	76, 502, 594
LweI	GCATC	1 cut(s)	472
MaeI	CTAG	3 cut(s)	503, 570, 759
MaeII	ACGT	2 cut(s)	527, 809
MaeIII	GTNAC	2 cut(s)	393, 508
MalI	GATC	4 cut(s)	263, 444, 450, 789
MboI	GATC	4 cut(s)	261, 442, 448, 787
MflI	RGATCY	3 cut(s)	261, 442, 448
MluCI	AATT	2 cut(s)	225, 521
MlyI	GAGTC	3 cut(s)	38, 190, 241
MmeI	TCCRAC	1 cut(s)	669
MnlI	CCTC	7 cut(s)	147, 345, 464, 621, 664, 685, 755
MroXI	GAANNNNTTC	1 cut(s)	80
MseI	TTAA	2 cut(s)	20, 150
MslI	CAYNNNNRTG	1 cut(s)	375
MwoI	GCNNNNNNNGC	1 cut(s)	313
NdeI	CATATG	2 cut(s)	355, 466
NdeII	GATC	4 cut(s)	261, 442, 448, 787
NlaIII	CATG	2 cut(s)	260, 406
NlaIV	GGNNCC	1 cut(s)	325
PciSI	GCTCTTC	1 cut(s)	375
PdmI	GAANNNNTTC	1 cut(s)	80
PfeI	GAWTC	2 cut(s)	81, 367
PkrI	GCNGC	3 cut(s)	66, 492, 609
PleI	GAGTC	3 cut(s)	38, 190, 241
PpsI	GAGTC	3 cut(s)	38, 190, 241
PpuMI	RGGWCCY	1 cut(s)	134
Psp5II	RGGWCCY	1 cut(s)	134
PspN4I	GGNNCC	1 cut(s)	325
PspPI	GGNCC	1 cut(s)	134
PspPPI	RGGWCCY	1 cut(s)	134
PsuI	RGATCY	3 cut(s)	261, 442, 448
RsaI	GTAC	1 cut(s)	632
RsaNI	GTAC	1 cut(s)	631
RseI	CAYNNNNRTG	1 cut(s)	375
SapI	GCTCTTC	1 cut(s)	375
SaqAI	TTAA	2 cut(s)	20, 150
SatI	GCNGC	3 cut(s)	65, 491, 608
Sau3AI	GATC	4 cut(s)	261, 442, 448, 787
Sau96I	GGNCC	1 cut(s)	134
SchI	GAGTC	3 cut(s)	38, 190, 241
SfaNI	GCATC	1 cut(s)	472
SinI	GGWCC	1 cut(s)	134
SmiMI	CAYNNNNRTG	1 cut(s)	375
SmlI	CTYRAG	2 cut(s)	87, 336
SmoI	CTYRAG	2 cut(s)	87, 336
Sse9I	AATT	2 cut(s)	225, 521
SspMI	CTAG	3 cut(s)	503, 570, 759
StyI	CCWWGG	1 cut(s)	301
TaaI	ACNGT	3 cut(s)	584, 652, 662
TaiI	ACGT	2 cut(s)	530, 812
TaqI	TCGA	1 cut(s)	29
TasI	AATT	2 cut(s)	225, 521
TfiI	GAWTC	2 cut(s)	81, 367
Tru1I	TTAA	2 cut(s)	20, 150
Tru9I	TTAA	2 cut(s)	20, 150
TscAI	CASTG	3 cut(s)	184, 216, 750
TseI	GCWGC	3 cut(s)	64, 490, 607
TspDTI	ATGAA	5 cut(s)	186, 342, 393, 630, 767
TspRI	CASTG	3 cut(s)	184, 216, 750
VpaK11BI	GGWCC	1 cut(s)	134
XapI	RAATTY	1 cut(s)	225
XmnI	GAANNNNTTC	1 cut(s)	80
XspI	CTAG	3 cut(s)	503, 570, 759
ZraI	GACGTC	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.