Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000681

Physical Location & Seq

Genomic Coordinates Forward (+)

88533256 .. 88533602

Gene Structure 347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG658600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 174 bp

ATGTGGTTATTGAGCTTCACGCGTGCCAAGAAAGGAAGTGCAATGCTATTCTATGAGATACTGGTGATGAAAACTAGAGGGTTTGTGGATGTGAAGCGAGCTGATCCCTACGGCGACATTCTATTCTGGAAACGTCCCAAATGGGAGCAAATGTGGGGAGATGATACATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009987 GO:0016043 GO:0022402 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

57

Amino Acids

6.91

Weight (kDa)

9.52

Isoelectric Point (pI)

33.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad21_Rec8	PF04824	8 - 42	6.2e-09	Conserved region of Rad21 / Rec8 like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840
fragaria_vesca	FvH4_6g53040 FvH4_6g53040 FvH4_6g53050 FvH4_6g53050
malus_domestica	MD09G1015100.v1.1 MD09G1015200.v1.1 MD17G1015200.v1.1
prunus_persica	Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1
pyrus_communis	pycom111g01230 pycom17g01230 pycom17g01240
rosa_chinensis	RchiOBHm_Chr2g0146031 RchiOBHm_Chr2g0172041 RchiOBHm_Chr2g0172061 RchiOBHm_Chr2g0172121 RchiOBHm_Chr2g0172131 RchiOBHm_Chr2g0172161 RchiOBHm_Chr2g0173841 RchiOBHm_Chr2g0174821 RchiOBHm_Chr2g0174831
rosa_laevigata	RLG00000022078 RLG00000022079 RLG00000022228 RLG00000022298 RLG00000022299 RLG00000032768
rosa_multiflora	Rmu_co8137076.1_g000001 Rmu_sc0001716.1_g000038 Rmu_sc0003188.1_g000021 Rmu_sc0015734.1_g000001 Rmu_sc0038259.1_g000001 Rmu_sc0038259.1_g000002 Rmu_sc0040737.1_g000001 Rmu_sc0041600.1_g000001 Rmu_ssc0000252.1_g000045
rosa_roxburghii	Rroxscaffold_2G00077660 Rroxscaffold_2G00080120 Rroxscaffold_2G00080130 Rroxscaffold_2G00080290
rosa_rugosa	Rorug02G0579500 Rorug02G0579600
rosa_samantha	Rh2AG632100 Rh2AG632200 Rh2AG656700 Rh2AG656800 Rh2AG660800 Rh2AG660900 Rh2BG645600 Rh2BG645700 Rh2BG667700 Rh2BG667800 Rh2BG672200 Rh2BG672300 Rh2CG627800 Rh2CG627900 Rh2CG635000 Rh2CG635100 Rh2DG658600 Rh2DG678300 Rh2DG685300 Rh2DG685400 Rh6AG066100 Rh6BG058900
rosa_wichuraiana	Rw2G053570 Rw2G054150 Rw2G054160 Rw6G005810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	22
AclWI	GGATC	1 cut(s)	98
AflIII	ACRYGT	1 cut(s)	20
AluBI	AGCT	2 cut(s)	15, 101
AluI	AGCT	2 cut(s)	15, 101
AlwI	GGATC	1 cut(s)	98
AsuHPI	GGTGA	1 cut(s)	76
BceAI	ACGGC	1 cut(s)	127
BfaI	CTAG	1 cut(s)	75
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bse1I	ACTGG	1 cut(s)	66
Bse3DI	GCAATG	1 cut(s)	48
BseGI	GGATG	1 cut(s)	94
BseMI	GCAATG	1 cut(s)	48
BseNI	ACTGG	1 cut(s)	66
Bsh1236I	CGCG	1 cut(s)	22
BslFI	GGGAC	1 cut(s)	120
BsmFI	GGGAC	1 cut(s)	120
Bsp143I	GATC	1 cut(s)	103
BspFNI	CGCG	1 cut(s)	22
BspPI	GGATC	1 cut(s)	98
BsrDI	GCAATG	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	66
BssMI	GATC	1 cut(s)	103
BstC8I	GCNNGC	2 cut(s)	24, 99
BstF5I	GGATG	1 cut(s)	94
BstFNI	CGCG	1 cut(s)	22
BstKTI	GATC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	103
BstUI	CGCG	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	94
Cac8I	GCNNGC	2 cut(s)	24, 99
CviJI	RGCY	2 cut(s)	15, 101
CviKI_1	RGCY	2 cut(s)	15, 101
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
FaiI	YATR	1 cut(s)	54
FaqI	GGGAC	1 cut(s)	120
FokI	GGATG	1 cut(s)	101
FspBI	CTAG	1 cut(s)	75
HphI	GGTGA	1 cut(s)	76
Hpy188III	TCNNGA	1 cut(s)	127
HpyCH4IV	ACGT	1 cut(s)	133
HpyCH4V	TGCA	1 cut(s)	41
HpySE526I	ACGT	1 cut(s)	133
Kzo9I	GATC	1 cut(s)	103
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	2 cut(s)	47, 112
MaeI	CTAG	1 cut(s)	75
MaeII	ACGT	1 cut(s)	133
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MluI	ACGCGT	1 cut(s)	20
MnlI	CCTC	1 cut(s)	71
MvnI	CGCG	1 cut(s)	22
NdeII	GATC	1 cut(s)	103
Sau3AI	GATC	1 cut(s)	103
SetI	ASST	3 cut(s)	17, 103, 136
SgeI	CNNG	8 cut(s)	31, 33, 35, 40, 74, 87, 110, 139
SspMI	CTAG	1 cut(s)	75
TaiI	ACGT	1 cut(s)	136
TspDTI	ATGAA	1 cut(s)	83
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.