Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000681

Physical Location & Seq

Genomic Coordinates Forward (+)

9330323 .. 9331426

Gene Structure 1104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG058900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGTTTCCCTTCGGAACCCAGTTGAGCTTTGATGCAACTGGTGAAGACCCGGAAGAACCTATGAAGATAGAGGCTAGAGGTGAATTGAGTTCATCAAGCTCATCATCACTGAGTACTAGCCTACCTACTTCTGGGTGTTGTTCGAATAATTTCGAGCTTTTTGATGACTGCAATGAAGCGCTACTAGACATAAAGAAATTTGTGTTGAGCACAAAAGACAATGTACCTGCAGAAATGCTGTGTGCGGCTTATCACTCTGTTATCATACCGGATAGGTTTGAACTTGATGCATATGATATGGGGAGCCTTGAAGATGTCAGTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009987 GO:0016043 GO:0022402 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

108

Amino Acids

11.72

Weight (kDa)

4.05

Isoelectric Point (pI)

39.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840
fragaria_vesca	FvH4_6g53040 FvH4_6g53040 FvH4_6g53050 FvH4_6g53050
malus_domestica	MD09G1015100.v1.1 MD09G1015200.v1.1 MD17G1015200.v1.1
prunus_persica	Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1
pyrus_communis	pycom111g01230 pycom17g01230 pycom17g01240
rosa_chinensis	RchiOBHm_Chr2g0146031 RchiOBHm_Chr2g0172041 RchiOBHm_Chr2g0172061 RchiOBHm_Chr2g0172121 RchiOBHm_Chr2g0172131 RchiOBHm_Chr2g0172161 RchiOBHm_Chr2g0173841 RchiOBHm_Chr2g0174821 RchiOBHm_Chr2g0174831
rosa_laevigata	RLG00000022078 RLG00000022079 RLG00000022228 RLG00000022298 RLG00000022299 RLG00000032768
rosa_multiflora	Rmu_co8137076.1_g000001 Rmu_sc0001716.1_g000038 Rmu_sc0003188.1_g000021 Rmu_sc0015734.1_g000001 Rmu_sc0038259.1_g000001 Rmu_sc0038259.1_g000002 Rmu_sc0040737.1_g000001 Rmu_sc0041600.1_g000001 Rmu_ssc0000252.1_g000045
rosa_roxburghii	Rroxscaffold_2G00077660 Rroxscaffold_2G00080120 Rroxscaffold_2G00080130 Rroxscaffold_2G00080290
rosa_rugosa	Rorug02G0579500 Rorug02G0579600
rosa_samantha	Rh2AG632100 Rh2AG632200 Rh2AG656700 Rh2AG656800 Rh2AG660800 Rh2AG660900 Rh2BG645600 Rh2BG645700 Rh2BG667700 Rh2BG667800 Rh2BG672200 Rh2BG672300 Rh2CG627800 Rh2CG627900 Rh2CG635000 Rh2CG635100 Rh2DG658600 Rh2DG678300 Rh2DG685300 Rh2DG685400 Rh6AG066100 Rh6BG058900
rosa_wichuraiana	Rw2G053570 Rw2G054150 Rw2G054160 Rw6G005810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	235
AciI	CCGC	1 cut(s)	245
AcsI	RAATTY	1 cut(s)	197
AfaI	GTAC	2 cut(s)	115, 225
AfeI	AGCGCT	1 cut(s)	180
AfiI	CCNNNNNNNGG	1 cut(s)	131
AgsI	TTSAA	2 cut(s)	281, 311
AluBI	AGCT	3 cut(s)	27, 99, 157
AluI	AGCT	3 cut(s)	27, 99, 157
Alw21I	GWGCWC	1 cut(s)	212
Aor51HI	AGCGCT	1 cut(s)	180
ApoI	RAATTY	1 cut(s)	197
Asp700I	GAANNNNTTC	1 cut(s)	149
AspLEI	GCGC	1 cut(s)	181
AsuC2I	CCSGG	1 cut(s)	50
AsuHPI	GGTGA	2 cut(s)	53, 92
AsuII	TTCGAA	1 cut(s)	143
BbsI	GAAGAC	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	212
BcnI	CCSGG	1 cut(s)	50
BfaI	CTAG	3 cut(s)	75, 117, 185
BfmI	CTRYAG	1 cut(s)	228
BfoI	RGCGCY	1 cut(s)	182
BfuAI	ACCTGC	1 cut(s)	235
BisI	GCNGC	1 cut(s)	246
BlsI	GCNGC	1 cut(s)	247
BmcAI	AGTACT	1 cut(s)	115
Bme1390I	CCNGG	1 cut(s)	50
BmiI	GGNNCC	2 cut(s)	16, 305
BmrFI	CCNGG	1 cut(s)	50
BmrI	ACTGGG	1 cut(s)	13
BmsI	GCATC	2 cut(s)	22, 277
BmuI	ACTGGG	1 cut(s)	13
BpiI	GAAGAC	1 cut(s)	51
Bpu14I	TTCGAA	1 cut(s)	143
BpuMI	CCSGG	1 cut(s)	50
BsaWI	WCCGGW	1 cut(s)	268
Bsc4I	CCNNNNNNNGG	1 cut(s)	131
Bse1I	ACTGG	2 cut(s)	19, 43
Bse3DI	GCAATG	1 cut(s)	178
BseLI	CCNNNNNNNGG	1 cut(s)	131
BseMI	GCAATG	1 cut(s)	178
BseMII	CTCAG	1 cut(s)	101
BseNI	ACTGG	2 cut(s)	19, 43
BsiHKAI	GWGCWC	1 cut(s)	212
BsiSI	CCGG	2 cut(s)	50, 269
BslI	CCNNNNNNNGG	1 cut(s)	131
Bsp119I	TTCGAA	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	212
BspACI	CCGC	1 cut(s)	245
BspCNI	CTCAG	1 cut(s)	102
BspLI	GGNNCC	2 cut(s)	16, 305
BspMAI	CTGCAG	1 cut(s)	232
BspMI	ACCTGC	1 cut(s)	235
BspT104I	TTCGAA	1 cut(s)	143
BsrDI	GCAATG	1 cut(s)	178
BsrI	ACTGG	2 cut(s)	19, 43
BstBI	TTCGAA	1 cut(s)	143
BstDEI	CTNAG	1 cut(s)	110
BstH2I	RGCGCY	1 cut(s)	182
BstHHI	GCGC	1 cut(s)	181
BstSCI	CCNGG	1 cut(s)	48
BstSFI	CTRYAG	1 cut(s)	228
BstV2I	GAAGAC	1 cut(s)	51
BtsIMutI	CAGTG	2 cut(s)	107, 325
BveI	ACCTGC	1 cut(s)	235
CfoI	GCGC	1 cut(s)	181
Csp6I	GTAC	2 cut(s)	114, 224
CviJI	RGCY	7 cut(s)	27, 74, 99, 120, 157, 248, 306
CviKI_1	RGCY	7 cut(s)	27, 74, 99, 120, 157, 248, 306
CviQI	GTAC	2 cut(s)	114, 224
DdeI	CTNAG	1 cut(s)	110
Eco47III	AGCGCT	1 cut(s)	180
EcoT22I	ATGCAT	1 cut(s)	292
FaiI	YATR	6 cut(s)	62, 191, 266, 292, 294, 299
FauNDI	CATATG	1 cut(s)	292
Fnu4HI	GCNGC	1 cut(s)	246
Fsp4HI	GCNGC	1 cut(s)	246
FspBI	CTAG	3 cut(s)	75, 117, 185
GlaI	GCGC	1 cut(s)	180
GluI	GCNGC	1 cut(s)	246
HaeII	RGCGCY	1 cut(s)	182
HapII	CCGG	2 cut(s)	50, 269
HhaI	GCGC	1 cut(s)	181
Hin6I	GCGC	1 cut(s)	179
HinP1I	GCGC	1 cut(s)	179
HpaII	CCGG	2 cut(s)	50, 269
HphI	GGTGA	2 cut(s)	53, 92
Hpy188I	TCNGA	1 cut(s)	14
HpyAV	CCTTC	1 cut(s)	19
HpyCH4V	TGCA	4 cut(s)	35, 171, 230, 290
HpyF3I	CTNAG	1 cut(s)	110
HspAI	GCGC	1 cut(s)	179
LmnI	GCTCC	1 cut(s)	303
LpnPI	CCDG	6 cut(s)	24, 32, 63, 117, 240, 282
LweI	GCATC	2 cut(s)	22, 277
MaeI	CTAG	3 cut(s)	75, 117, 185
MboII	GAAGA	4 cut(s)	56, 65, 76, 323
MhlI	GDGCHC	1 cut(s)	212
MluCI	AATT	3 cut(s)	83, 148, 197
MnlI	CCTC	2 cut(s)	64, 71
Mph1103I	ATGCAT	1 cut(s)	292
MroXI	GAANNNNTTC	1 cut(s)	149
MspI	CCGG	2 cut(s)	50, 269
MspR9I	CCNGG	1 cut(s)	50
NciI	CCSGG	1 cut(s)	50
NdeI	CATATG	1 cut(s)	292
NlaIV	GGNNCC	2 cut(s)	16, 305
NsiI	ATGCAT	1 cut(s)	292
NspV	TTCGAA	1 cut(s)	143
PdmI	GAANNNNTTC	1 cut(s)	149
PkrI	GCNGC	1 cut(s)	247
PspN4I	GGNNCC	2 cut(s)	16, 305
PstI	CTGCAG	1 cut(s)	232
RsaI	GTAC	2 cut(s)	115, 225
RsaNI	GTAC	2 cut(s)	114, 224
SatI	GCNGC	1 cut(s)	246
ScaI	AGTACT	1 cut(s)	115
ScrFI	CCNGG	1 cut(s)	50
SduI	GDGCHC	1 cut(s)	212
SetI	ASST	8 cut(s)	29, 61, 82, 101, 127, 159, 229, 278
SfaNI	GCATC	2 cut(s)	22, 277
SfcI	CTRYAG	1 cut(s)	228
SfuI	TTCGAA	1 cut(s)	143
Sse9I	AATT	3 cut(s)	83, 148, 197
SsiI	CCGC	1 cut(s)	245
SspMI	CTAG	3 cut(s)	75, 117, 185
StyD4I	CCNGG	1 cut(s)	48
TaqI	TCGA	2 cut(s)	143, 153
TasI	AATT	3 cut(s)	83, 148, 197
TatI	WGTACW	1 cut(s)	113
TauI	GCSGC	1 cut(s)	248
TscAI	CASTG	2 cut(s)	114, 325
TspDTI	ATGAA	3 cut(s)	77, 81, 189
TspRI	CASTG	2 cut(s)	114, 325
XapI	RAATTY	1 cut(s)	197
XmnI	GAANNNNTTC	1 cut(s)	149
XspI	CTAG	3 cut(s)	75, 117, 185
ZrmI	AGTACT	1 cut(s)	115
Zsp2I	ATGCAT	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.