Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000681

Physical Location & Seq

Genomic Coordinates Reverse (-)

87309808 .. 87311776

Gene Structure 1969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG656700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGAGAATCTGAAAAATGTTACATTTTCTCAAGAAGAATCCTTGGGCCTTGATGTGCTTTGTTGGGCCAAGAAACCTCAAGAACTTGTTTGTTCATATGGAGAAGAGAATCATAATGGTGAAGAGCCAACTAAGTTACAGGACATGATTGCACCGGATACCATGAAAAGTATTCCGGAAGAAGATCCAGATCCCCTCTCAGTTGCATATGATGGCAATCCTGATGCCAAGCAGCCAGATGCTCTAGGTGTTACTACACCAAAATTGACTGCTGTTCCCAGACCAGTACCCAAGAAGTTGGCTTGGATTTCTAGGAAAAGAAAGTGTGTCTTTGATGATATAGTAGTGCTGCCTAATGAGGTAATCAGGAAAGCATACATGATGCTAGTGATTTGGTTGCTAAAAGAAAAAAAGTTCCCAAAAATGCCTATGCTGTTTGGAAAACTTGTCGAAGTGGAAATCTTGCCCAGAATTTCTTGGCTTATCTATCCAAGGAGTCCTGAAGTTCCTGATAAGAATCTAGTAAGACCTGAGACATCTGGAAGGATAGGAAAAGAGCCATCTGTGGGAGCAGAGCAAACTTTCCCTTCTGGAAGTGTAGAAGAAGTTCCGCCATCTCTAGATAGGGATCAAGAGCATGACTTCAATTTTTTGAGTGAGGAAGCTGAAATTTGGGAAGGAGTTAAGCCTGAGCTCGATAATGTGGTGGAAGCTGGAGATAAAATGGAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009987 GO:0016043 GO:0022402 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

244

Amino Acids

27.58

Weight (kDa)

4.74

Isoelectric Point (pI)

53.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840
fragaria_vesca	FvH4_6g53040 FvH4_6g53040 FvH4_6g53050 FvH4_6g53050
malus_domestica	MD09G1015100.v1.1 MD09G1015200.v1.1 MD17G1015200.v1.1
prunus_persica	Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1
pyrus_communis	pycom111g01230 pycom17g01230 pycom17g01240
rosa_chinensis	RchiOBHm_Chr2g0146031 RchiOBHm_Chr2g0172041 RchiOBHm_Chr2g0172061 RchiOBHm_Chr2g0172121 RchiOBHm_Chr2g0172131 RchiOBHm_Chr2g0172161 RchiOBHm_Chr2g0173841 RchiOBHm_Chr2g0174821 RchiOBHm_Chr2g0174831
rosa_laevigata	RLG00000022078 RLG00000022079 RLG00000022228 RLG00000022298 RLG00000022299 RLG00000032768
rosa_multiflora	Rmu_co8137076.1_g000001 Rmu_sc0001716.1_g000038 Rmu_sc0003188.1_g000021 Rmu_sc0015734.1_g000001 Rmu_sc0038259.1_g000001 Rmu_sc0038259.1_g000002 Rmu_sc0040737.1_g000001 Rmu_sc0041600.1_g000001 Rmu_ssc0000252.1_g000045
rosa_roxburghii	Rroxscaffold_2G00077660 Rroxscaffold_2G00080120 Rroxscaffold_2G00080130 Rroxscaffold_2G00080290
rosa_rugosa	Rorug02G0579500 Rorug02G0579600
rosa_samantha	Rh2AG632100 Rh2AG632200 Rh2AG656700 Rh2AG656800 Rh2AG660800 Rh2AG660900 Rh2BG645600 Rh2BG645700 Rh2BG667700 Rh2BG667800 Rh2BG672200 Rh2BG672300 Rh2CG627800 Rh2CG627900 Rh2CG635000 Rh2CG635100 Rh2DG658600 Rh2DG678300 Rh2DG685300 Rh2DG685400 Rh6AG066100 Rh6BG058900
rosa_wichuraiana	Rw2G053570 Rw2G054150 Rw2G054160 Rw6G005810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	175
AciI	CCGC	1 cut(s)	611
AclWI	GGATC	3 cut(s)	179, 185, 636
AcsI	RAATTY	2 cut(s)	471, 669
AcuI	CTGAAG	1 cut(s)	522
AfaI	GTAC	1 cut(s)	288
AfiI	CCNNNNNNNGG	1 cut(s)	566
AgsI	TTSAA	1 cut(s)	646
AluBI	AGCT	3 cut(s)	665, 694, 713
AluI	AGCT	3 cut(s)	665, 694, 713
Alw21I	GWGCWC	1 cut(s)	696
Alw26I	GTCTC	1 cut(s)	527
AlwI	GGATC	3 cut(s)	179, 185, 636
Aor13HI	TCCGGA	1 cut(s)	175
AoxI	GGCC	2 cut(s)	46, 66
ApeKI	GCWGC	2 cut(s)	232, 349
ApoI	RAATTY	2 cut(s)	471, 669
Asp700I	GAANNNNTTC	1 cut(s)	606
AspS9I	GGNCC	2 cut(s)	46, 66
AsuHPI	GGTGA	1 cut(s)	131
BanII	GRGCYC	1 cut(s)	696
Bbv12I	GWGCWC	1 cut(s)	696
BbvI	GCAGC	2 cut(s)	244, 336
BccI	CCATC	3 cut(s)	206, 568, 622
BciVI	GTATCC	1 cut(s)	151
BcoDI	GTCTC	1 cut(s)	527
BfaI	CTAG	5 cut(s)	245, 312, 386, 521, 620
BfuI	GTATCC	1 cut(s)	151
BisI	GCNGC	2 cut(s)	233, 350
BlsI	GCNGC	2 cut(s)	234, 351
BmgT120I	GGNCC	2 cut(s)	46, 66
BmsI	GCATC	3 cut(s)	214, 229, 372
BpmI	CTGGAG	1 cut(s)	735
Bpu10I	CCTNAGC	1 cut(s)	690
BpuEI	CTTGAG	2 cut(s)	15, 63
BsaBI	GATNNNNATC	4 cut(s)	189, 216, 516, 627
BsaJI	CCNNGG	2 cut(s)	42, 491
BsaWI	WCCGGW	2 cut(s)	154, 175
Bsc4I	CCNNNNNNNGG	1 cut(s)	566
Bse1I	ACTGG	1 cut(s)	284
Bse8I	GATNNNNATC	4 cut(s)	189, 216, 516, 627
BseAI	TCCGGA	1 cut(s)	175
BseDI	CCNNGG	2 cut(s)	42, 491
BseJI	GATNNNNATC	4 cut(s)	189, 216, 516, 627
BseLI	CCNNNNNNNGG	1 cut(s)	566
BseMII	CTCAG	3 cut(s)	213, 522, 681
BseNI	ACTGG	1 cut(s)	284
BseXI	GCAGC	2 cut(s)	244, 336
BshFI	GGCC	2 cut(s)	48, 68
BsiHKAI	GWGCWC	1 cut(s)	696
BsiSI	CCGG	2 cut(s)	155, 176
BslI	CCNNNNNNNGG	1 cut(s)	566
BsmAI	GTCTC	1 cut(s)	527
BsnI	GGCC	2 cut(s)	48, 68
Bsp1286I	GDGCHC	1 cut(s)	696
Bsp13I	TCCGGA	1 cut(s)	175
Bsp143I	GATC	3 cut(s)	184, 190, 628
BspACI	CCGC	1 cut(s)	611
BspANI	GGCC	2 cut(s)	48, 68
BspCNI	CTCAG	3 cut(s)	212, 523, 682
BspEI	TCCGGA	1 cut(s)	175
BspPI	GGATC	3 cut(s)	179, 185, 636
BspQI	GCTCTTC	1 cut(s)	117
BsrI	ACTGG	1 cut(s)	284
BssECI	CCNNGG	2 cut(s)	42, 491
BssMI	GATC	3 cut(s)	184, 190, 628
BssT1I	CCWWGG	2 cut(s)	42, 491
Bst6I	CTCTTC	3 cut(s)	99, 117, 723
BstDEI	CTNAG	4 cut(s)	132, 199, 531, 690
BstKTI	GATC	3 cut(s)	187, 193, 631
BstMAI	GTCTC	1 cut(s)	527
BstMBI	GATC	3 cut(s)	184, 190, 628
BstV1I	GCAGC	2 cut(s)	244, 336
BstX2I	RGATCY	2 cut(s)	184, 190
BstXI	CCANNNNNNTGG	1 cut(s)	298
BstYI	RGATCY	2 cut(s)	184, 190
BsuI	GTATCC	1 cut(s)	151
BsuRI	GGCC	2 cut(s)	48, 68
Cfr13I	GGNCC	2 cut(s)	46, 66
Csp6I	GTAC	1 cut(s)	287
CviAII	CATG	4 cut(s)	145, 163, 379, 638
CviQI	GTAC	1 cut(s)	287
DdeI	CTNAG	4 cut(s)	132, 199, 531, 690
DpnI	GATC	3 cut(s)	186, 192, 630
DpnII	GATC	3 cut(s)	184, 190, 628
Eam1104I	CTCTTC	3 cut(s)	99, 117, 723
EarI	CTCTTC	3 cut(s)	99, 117, 723
EciI	GGCGGA	1 cut(s)	600
Ecl136II	GAGCTC	1 cut(s)	694
Eco130I	CCWWGG	2 cut(s)	42, 491
Eco24I	GRGCYC	1 cut(s)	696
Eco53kI	GAGCTC	1 cut(s)	694
Eco57I	CTGAAG	1 cut(s)	522
EcoICRI	GAGCTC	1 cut(s)	694
EcoT14I	CCWWGG	2 cut(s)	42, 491
EcoT38I	GRGCYC	1 cut(s)	696
ErhI	CCWWGG	2 cut(s)	42, 491
FaeI	CATG	4 cut(s)	148, 166, 382, 641
FalI	AAGNNNNNCTT	2 cut(s)	314, 346
FatI	CATG	4 cut(s)	144, 162, 378, 637
FauNDI	CATATG	2 cut(s)	97, 208
Fnu4HI	GCNGC	2 cut(s)	233, 350
FriOI	GRGCYC	1 cut(s)	696
Fsp4HI	GCNGC	2 cut(s)	233, 350
FspBI	CTAG	5 cut(s)	245, 312, 386, 521, 620
GluI	GCNGC	2 cut(s)	233, 350
GsuI	CTGGAG	1 cut(s)	735
HaeIII	GGCC	2 cut(s)	48, 68
HapII	CCGG	2 cut(s)	155, 176
Hin1II	CATG	4 cut(s)	148, 166, 382, 641
HinfI	GANTC	5 cut(s)	7, 38, 109, 496, 517
HpaII	CCGG	2 cut(s)	155, 176
HphI	GGTGA	1 cut(s)	131
Hpy188I	TCNGA	1 cut(s)	12
HpyAV	CCTTC	3 cut(s)	537, 597, 671
HpyCH4V	TGCA	2 cut(s)	152, 206
HpyF3I	CTNAG	4 cut(s)	132, 199, 531, 690
Hsp92II	CATG	4 cut(s)	148, 166, 382, 641
Kpn2I	TCCGGA	1 cut(s)	175
Kzo9I	GATC	3 cut(s)	184, 190, 628
LguI	GCTCTTC	1 cut(s)	117
LmnI	GCTCC	1 cut(s)	569
Lsp1109I	GCAGC	2 cut(s)	244, 336
LweI	GCATC	3 cut(s)	214, 229, 372
MaeI	CTAG	5 cut(s)	245, 312, 386, 521, 620
MaeIII	GTNAC	3 cut(s)	19, 135, 250
MalI	GATC	3 cut(s)	186, 192, 630
MboI	GATC	3 cut(s)	184, 190, 628
MboII	GAAGA	6 cut(s)	47, 116, 134, 191, 194, 614
MflI	RGATCY	2 cut(s)	184, 190
MhlI	GDGCHC	1 cut(s)	696
MluCI	AATT	4 cut(s)	263, 471, 646, 669
MlyI	GAGTC	1 cut(s)	505
MnlI	CCTC	4 cut(s)	87, 206, 352, 652
MroI	TCCGGA	1 cut(s)	175
MroXI	GAANNNNTTC	1 cut(s)	606
MseI	TTAA	1 cut(s)	684
MslI	CAYNNNNRTG	1 cut(s)	117
MspI	CCGG	2 cut(s)	155, 176
NdeI	CATATG	2 cut(s)	97, 208
NdeII	GATC	3 cut(s)	184, 190, 628
NlaIII	CATG	4 cut(s)	148, 166, 382, 641
PciSI	GCTCTTC	1 cut(s)	117
PdmI	GAANNNNTTC	1 cut(s)	606
PfeI	GAWTC	4 cut(s)	7, 38, 109, 517
PkrI	GCNGC	2 cut(s)	234, 351
PleI	GAGTC	1 cut(s)	504
PpsI	GAGTC	1 cut(s)	504
Psp124BI	GAGCTC	1 cut(s)	696
PspPI	GGNCC	2 cut(s)	46, 66
PsrI	GAACNNNNNNTAC	2 cut(s)	591, 623
PsuI	RGATCY	2 cut(s)	184, 190
RsaI	GTAC	1 cut(s)	288
RsaNI	GTAC	1 cut(s)	287
RseI	CAYNNNNRTG	1 cut(s)	117
SacI	GAGCTC	1 cut(s)	696
SapI	GCTCTTC	1 cut(s)	117
SaqAI	TTAA	1 cut(s)	684
SatI	GCNGC	2 cut(s)	233, 350
Sau3AI	GATC	3 cut(s)	184, 190, 628
Sau96I	GGNCC	2 cut(s)	46, 66
SchI	GAGTC	1 cut(s)	505
SduI	GDGCHC	1 cut(s)	696
SetI	ASST	7 cut(s)	79, 250, 363, 532, 667, 696, 715
SfaNI	GCATC	3 cut(s)	214, 229, 372
SmiMI	CAYNNNNRTG	1 cut(s)	117
SmlI	CTYRAG	2 cut(s)	30, 78
SmoI	CTYRAG	2 cut(s)	30, 78
Sse9I	AATT	4 cut(s)	263, 471, 646, 669
SsiI	CCGC	1 cut(s)	611
SspMI	CTAG	5 cut(s)	245, 312, 386, 521, 620
SstI	GAGCTC	1 cut(s)	696
StyI	CCWWGG	2 cut(s)	42, 491
TaqI	TCGA	2 cut(s)	450, 696
TasI	AATT	4 cut(s)	263, 471, 646, 669
TfiI	GAWTC	4 cut(s)	7, 38, 109, 517
Tru1I	TTAA	1 cut(s)	684
Tru9I	TTAA	1 cut(s)	684
TseI	GCWGC	2 cut(s)	232, 349
TspDTI	ATGAA	2 cut(s)	84, 179
XapI	RAATTY	2 cut(s)	471, 669
XbaI	TCTAGA	1 cut(s)	619
XmnI	GAANNNNTTC	1 cut(s)	606
XspI	CTAG	5 cut(s)	245, 312, 386, 521, 620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.