Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000681

Physical Location & Seq

Genomic Coordinates Reverse (-)

88000049 .. 88004585

Gene Structure 4537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG667700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGAGAATCTGAAAAATGTTACATTTTCTCAAGAAGAATCCTTGGGCCTTGATGTGCTTTGTTGGGCCAAGAAACCTCAAGAACTTGTTTGTTCATATGGAGAAGAGAATCATAATGGTGAAGAGCCAACTAAGTTACAGGACATGATTGCACCGGATACCATGAAAAGTATTCCGGAAGAAGATCCAGATCCCCTCTCAGTTGCATATGATGGCAATCCTGATGCCAAGCAGCCAGATGCTCTAGGTGTTACTACACCAAAATTGACTGCTGTTCCCAGACCAGTACCCAAGAAGTTGGCTTGGATTTCTAGGAAAAGAAAGTGTGTCTTTGATGATATAGTAGTGCTGCCTAATGAGGTAATCAGGAAAGCATACATGATGCTAGTGATTTGGTTGCTAAAAGAAAAAAAGTTCCCAAAAATGCCTATGCTGTTTGGAAAACTTGTCGAAGTGGAAATCTTGCCCAGAATTTCTTGGCTTATCTATCCAAGGAGTCCTGAAGTTCCTGATAAGAATCTAGTAAGACCTGAGACATCTGGAAGGATAGGAAAAGAGCCATCTGTGGGAGCAGAGCAAACTTTCCCTTCTGGAAGTGTAGAAGAAGTTCCGCCATCTCTAGATAGGGATCAAGAGCATGACTTCAATTTTTTGAGTGAGGAAGCTGAAATTTGGGAAGGAGTTAAGCCTGAGCTCGATAATGTGGTGGAAGCTGGAGATAAAATGGAAGAGATCGATGCTTACGATCTTGATGGGTGGTGGGTCGGTACAATTTCGTCAGAGGAAAATGGGTCTGGGCATCAGTCTCTGTTCGTCAAGACTACTGGGCAAGAGCTTGATTGCCTAGTTCTGAAGCTGAGGGTTGACGTTGCTGACGTGAAGACTCCACTGGTGGTCGTGGTGGCGTCTTCAGGGCCGGGAGCCGGTGCGTTCGAGAAGCGGCTGGTCGAGATGATAGCCAAGGATCTGGTGGAGAACGCAGAGAAGAAAGATGGAGAGGGCAACGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009987 GO:0016043 GO:0022402 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

336

Amino Acids

37.41

Weight (kDa)

4.65

Isoelectric Point (pI)

46.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840
fragaria_vesca	FvH4_6g53040 FvH4_6g53040 FvH4_6g53050 FvH4_6g53050
malus_domestica	MD09G1015100.v1.1 MD09G1015200.v1.1 MD17G1015200.v1.1
prunus_persica	Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1
pyrus_communis	pycom111g01230 pycom17g01230 pycom17g01240
rosa_chinensis	RchiOBHm_Chr2g0146031 RchiOBHm_Chr2g0172041 RchiOBHm_Chr2g0172061 RchiOBHm_Chr2g0172121 RchiOBHm_Chr2g0172131 RchiOBHm_Chr2g0172161 RchiOBHm_Chr2g0173841 RchiOBHm_Chr2g0174821 RchiOBHm_Chr2g0174831
rosa_laevigata	RLG00000022078 RLG00000022079 RLG00000022228 RLG00000022298 RLG00000022299 RLG00000032768
rosa_multiflora	Rmu_co8137076.1_g000001 Rmu_sc0001716.1_g000038 Rmu_sc0003188.1_g000021 Rmu_sc0015734.1_g000001 Rmu_sc0038259.1_g000001 Rmu_sc0038259.1_g000002 Rmu_sc0040737.1_g000001 Rmu_sc0041600.1_g000001 Rmu_ssc0000252.1_g000045
rosa_roxburghii	Rroxscaffold_2G00077660 Rroxscaffold_2G00080120 Rroxscaffold_2G00080130 Rroxscaffold_2G00080290
rosa_rugosa	Rorug02G0579500 Rorug02G0579600
rosa_samantha	Rh2AG632100 Rh2AG632200 Rh2AG656700 Rh2AG656800 Rh2AG660800 Rh2AG660900 Rh2BG645600 Rh2BG645700 Rh2BG667700 Rh2BG667800 Rh2BG672200 Rh2BG672300 Rh2CG627800 Rh2CG627900 Rh2CG635000 Rh2CG635100 Rh2DG658600 Rh2DG678300 Rh2DG685300 Rh2DG685400 Rh6AG066100 Rh6BG058900
rosa_wichuraiana	Rw2G053570 Rw2G054150 Rw2G054160 Rw6G005810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	175
AciI	CCGC	2 cut(s)	611, 940
AclWI	GGATC	4 cut(s)	179, 185, 636, 972
AcsI	RAATTY	2 cut(s)	471, 669
AcuI	CTGAAG	3 cut(s)	522, 872, 894
AcyI	GRCGYC	1 cut(s)	905
AfaI	GTAC	2 cut(s)	288, 769
AfiI	CCNNNNNNNGG	2 cut(s)	566, 923
AgsI	TTSAA	1 cut(s)	646
AjiI	CACGTC	1 cut(s)	877
AluBI	AGCT	5 cut(s)	665, 694, 713, 835, 856
AluI	AGCT	5 cut(s)	665, 694, 713, 835, 856
Alw21I	GWGCWC	1 cut(s)	696
Alw26I	GTCTC	2 cut(s)	527, 810
AlwI	GGATC	4 cut(s)	179, 185, 636, 972
AlwNI	CAGNNNCTG	1 cut(s)	808
Aor13HI	TCCGGA	1 cut(s)	175
AoxI	GGCC	3 cut(s)	46, 66, 914
ApeKI	GCWGC	2 cut(s)	232, 349
ApoI	RAATTY	2 cut(s)	471, 669
Asp700I	GAANNNNTTC	1 cut(s)	606
AspS9I	GGNCC	3 cut(s)	46, 66, 914
AsuC2I	CCSGG	1 cut(s)	918
AsuHPI	GGTGA	1 cut(s)	131
BanII	GRGCYC	1 cut(s)	696
BbsI	GAAGAC	2 cut(s)	887, 900
Bbv12I	GWGCWC	1 cut(s)	696
BbvCI	CCTCAGC	1 cut(s)	857
BbvI	GCAGC	2 cut(s)	244, 336
BccI	CCATC	5 cut(s)	206, 568, 622, 746, 986
BciVI	GTATCC	1 cut(s)	151
BcnI	CCSGG	1 cut(s)	918
BcoDI	GTCTC	2 cut(s)	527, 810
BfaI	CTAG	6 cut(s)	245, 312, 386, 521, 620, 845
BfuI	GTATCC	1 cut(s)	151
BisI	GCNGC	3 cut(s)	233, 350, 941
BlsI	GCNGC	3 cut(s)	234, 351, 942
Bme1390I	CCNGG	1 cut(s)	918
BmgBI	CACGTC	1 cut(s)	877
BmgT120I	GGNCC	3 cut(s)	46, 66, 914
BmiI	GGNNCC	1 cut(s)	922
BmrFI	CCNGG	1 cut(s)	918
BmrI	ACTGGG	1 cut(s)	834
BmsI	GCATC	5 cut(s)	214, 229, 372, 727, 808
BmuI	ACTGGG	1 cut(s)	834
BpiI	GAAGAC	2 cut(s)	887, 900
BpmI	CTGGAG	1 cut(s)	735
Bpu10I	CCTNAGC	2 cut(s)	690, 857
BpuEI	CTTGAG	2 cut(s)	15, 63
BpuMI	CCSGG	1 cut(s)	918
Bsa29I	ATCGAT	1 cut(s)	735
BsaBI	GATNNNNATC	4 cut(s)	189, 216, 516, 627
BsaHI	GRCGYC	1 cut(s)	905
BsaJI	CCNNGG	3 cut(s)	42, 491, 960
BsaWI	WCCGGW	2 cut(s)	154, 175
Bsc4I	CCNNNNNNNGG	2 cut(s)	566, 923
Bse118I	RCCGGY	1 cut(s)	923
Bse1I	ACTGG	3 cut(s)	284, 829, 894
Bse8I	GATNNNNATC	4 cut(s)	189, 216, 516, 627
BseAI	TCCGGA	1 cut(s)	175
BseCI	ATCGAT	1 cut(s)	735
BseDI	CCNNGG	3 cut(s)	42, 491, 960
BseJI	GATNNNNATC	4 cut(s)	189, 216, 516, 627
BseLI	CCNNNNNNNGG	2 cut(s)	566, 923
BseMII	CTCAG	4 cut(s)	213, 522, 681, 848
BseNI	ACTGG	3 cut(s)	284, 829, 894
BseXI	GCAGC	2 cut(s)	244, 336
BshFI	GGCC	3 cut(s)	48, 68, 916
BshVI	ATCGAT	1 cut(s)	735
BsiHKAI	GWGCWC	1 cut(s)	696
BsiSI	CCGG	4 cut(s)	155, 176, 917, 924
BslI	CCNNNNNNNGG	2 cut(s)	566, 923
BsmAI	GTCTC	2 cut(s)	527, 810
BsnI	GGCC	3 cut(s)	48, 68, 916
Bsp1286I	GDGCHC	1 cut(s)	696
Bsp13I	TCCGGA	1 cut(s)	175
Bsp143I	GATC	6 cut(s)	184, 190, 628, 732, 745, 964
BspACI	CCGC	2 cut(s)	611, 940
BspANI	GGCC	3 cut(s)	48, 68, 916
BspCNI	CTCAG	4 cut(s)	212, 523, 682, 849
BspDI	ATCGAT	1 cut(s)	735
BspEI	TCCGGA	1 cut(s)	175
BspLI	GGNNCC	1 cut(s)	922
BspPI	GGATC	4 cut(s)	179, 185, 636, 972
BspQI	GCTCTTC	1 cut(s)	117
BsrFI	RCCGGY	1 cut(s)	923
BsrI	ACTGG	3 cut(s)	284, 829, 894
BssAI	RCCGGY	1 cut(s)	923
BssECI	CCNNGG	3 cut(s)	42, 491, 960
BssMI	GATC	6 cut(s)	184, 190, 628, 732, 745, 964
BssNI	GRCGYC	1 cut(s)	905
BssT1I	CCWWGG	3 cut(s)	42, 491, 960
Bst6I	CTCTTC	3 cut(s)	99, 117, 723
BstACI	GRCGYC	1 cut(s)	905
BstDEI	CTNAG	5 cut(s)	132, 199, 531, 690, 857
BstKTI	GATC	6 cut(s)	187, 193, 631, 735, 748, 967
BstMAI	GTCTC	2 cut(s)	527, 810
BstMBI	GATC	6 cut(s)	184, 190, 628, 732, 745, 964
BstSCI	CCNGG	1 cut(s)	916
BstV1I	GCAGC	2 cut(s)	244, 336
BstV2I	GAAGAC	2 cut(s)	887, 900
BstX2I	RGATCY	3 cut(s)	184, 190, 964
BstXI	CCANNNNNNTGG	2 cut(s)	298, 967
BstYI	RGATCY	3 cut(s)	184, 190, 964
Bsu15I	ATCGAT	1 cut(s)	735
BsuI	GTATCC	1 cut(s)	151
BsuRI	GGCC	3 cut(s)	48, 68, 916
BsuTUI	ATCGAT	1 cut(s)	735
BtrI	CACGTC	1 cut(s)	877
BtsIMutI	CAGTG	1 cut(s)	887
CaiI	CAGNNNCTG	1 cut(s)	808
Cfr10I	RCCGGY	1 cut(s)	923
Cfr13I	GGNCC	3 cut(s)	46, 66, 914
ClaI	ATCGAT	1 cut(s)	735
CseI	GACGC	1 cut(s)	894
Csp6I	GTAC	2 cut(s)	287, 768
CviAII	CATG	4 cut(s)	145, 163, 379, 638
CviQI	GTAC	2 cut(s)	287, 768
DdeI	CTNAG	5 cut(s)	132, 199, 531, 690, 857
DpnI	GATC	6 cut(s)	186, 192, 630, 734, 747, 966
DpnII	GATC	6 cut(s)	184, 190, 628, 732, 745, 964
Eam1104I	CTCTTC	3 cut(s)	99, 117, 723
EarI	CTCTTC	3 cut(s)	99, 117, 723
EciI	GGCGGA	1 cut(s)	600
Ecl136II	GAGCTC	1 cut(s)	694
Eco130I	CCWWGG	3 cut(s)	42, 491, 960
Eco24I	GRGCYC	1 cut(s)	696
Eco53kI	GAGCTC	1 cut(s)	694
Eco57I	CTGAAG	3 cut(s)	522, 872, 894
EcoICRI	GAGCTC	1 cut(s)	694
EcoT14I	CCWWGG	3 cut(s)	42, 491, 960
EcoT38I	GRGCYC	1 cut(s)	696
ErhI	CCWWGG	3 cut(s)	42, 491, 960
FaeI	CATG	4 cut(s)	148, 166, 382, 641
FalI	AAGNNNNNCTT	2 cut(s)	314, 346
FatI	CATG	4 cut(s)	144, 162, 378, 637
FauNDI	CATATG	2 cut(s)	97, 208
Fnu4HI	GCNGC	3 cut(s)	233, 350, 941
FriOI	GRGCYC	1 cut(s)	696
Fsp4HI	GCNGC	3 cut(s)	233, 350, 941
FspBI	CTAG	6 cut(s)	245, 312, 386, 521, 620, 845
GluI	GCNGC	3 cut(s)	233, 350, 941
GsuI	CTGGAG	1 cut(s)	735
HaeIII	GGCC	3 cut(s)	48, 68, 916
HapII	CCGG	4 cut(s)	155, 176, 917, 924
HgaI	GACGC	1 cut(s)	894
Hin1I	GRCGYC	1 cut(s)	905
Hin1II	CATG	4 cut(s)	148, 166, 382, 641
HincII	GTYRAC	1 cut(s)	865
HindII	GTYRAC	1 cut(s)	865
HinfI	GANTC	6 cut(s)	7, 38, 109, 496, 517, 883
HpaII	CCGG	4 cut(s)	155, 176, 917, 924
HphI	GGTGA	1 cut(s)	131
Hpy166II	GTNNAC	1 cut(s)	865
Hpy188I	TCNGA	3 cut(s)	12, 781, 852
Hpy8I	GTNNAC	1 cut(s)	865
HpyAV	CCTTC	3 cut(s)	537, 597, 671
HpyCH4IV	ACGT	2 cut(s)	867, 876
HpyCH4V	TGCA	2 cut(s)	152, 206
HpyF3I	CTNAG	5 cut(s)	132, 199, 531, 690, 857
HpySE526I	ACGT	2 cut(s)	867, 876
Hsp92I	GRCGYC	1 cut(s)	905
Hsp92II	CATG	4 cut(s)	148, 166, 382, 641
Kpn2I	TCCGGA	1 cut(s)	175
Kzo9I	GATC	6 cut(s)	184, 190, 628, 732, 745, 964
LguI	GCTCTTC	1 cut(s)	117
LmnI	GCTCC	2 cut(s)	569, 920
Lsp1109I	GCAGC	2 cut(s)	244, 336
LweI	GCATC	5 cut(s)	214, 229, 372, 727, 808
MaeI	CTAG	6 cut(s)	245, 312, 386, 521, 620, 845
MaeII	ACGT	2 cut(s)	867, 876
MaeIII	GTNAC	3 cut(s)	19, 135, 250
MalI	GATC	6 cut(s)	186, 192, 630, 734, 747, 966
MboI	GATC	6 cut(s)	184, 190, 628, 732, 745, 964
MflI	RGATCY	3 cut(s)	184, 190, 964
MhlI	GDGCHC	1 cut(s)	696
MluCI	AATT	5 cut(s)	263, 471, 646, 669, 771
MlyI	GAGTC	2 cut(s)	505, 877
MnlI	CCTC	7 cut(s)	87, 206, 352, 652, 775, 852, 991
MroI	TCCGGA	1 cut(s)	175
MroXI	GAANNNNTTC	1 cut(s)	606
MseI	TTAA	1 cut(s)	684
MslI	CAYNNNNRTG	1 cut(s)	117
MspI	CCGG	4 cut(s)	155, 176, 917, 924
MspR9I	CCNGG	1 cut(s)	918
NciI	CCSGG	1 cut(s)	918
NdeI	CATATG	2 cut(s)	97, 208
NdeII	GATC	6 cut(s)	184, 190, 628, 732, 745, 964
NlaIII	CATG	4 cut(s)	148, 166, 382, 641
NlaIV	GGNNCC	1 cut(s)	922
PciSI	GCTCTTC	1 cut(s)	117
PcsI	WCGNNNNNNNCGW	2 cut(s)	741, 873
PdmI	GAANNNNTTC	1 cut(s)	606
PfeI	GAWTC	4 cut(s)	7, 38, 109, 517
PkrI	GCNGC	3 cut(s)	234, 351, 942
PleI	GAGTC	2 cut(s)	504, 877
PpsI	GAGTC	2 cut(s)	504, 877
Psp124BI	GAGCTC	1 cut(s)	696
PspN4I	GGNNCC	1 cut(s)	922
PspPI	GGNCC	3 cut(s)	46, 66, 914
PsrI	GAACNNNNNNTAC	2 cut(s)	591, 623
PstNI	CAGNNNCTG	1 cut(s)	808
PsuI	RGATCY	3 cut(s)	184, 190, 964
RsaI	GTAC	2 cut(s)	288, 769
RsaNI	GTAC	2 cut(s)	287, 768
RseI	CAYNNNNRTG	1 cut(s)	117
SacI	GAGCTC	1 cut(s)	696
SapI	GCTCTTC	1 cut(s)	117
SaqAI	TTAA	1 cut(s)	684
SatI	GCNGC	3 cut(s)	233, 350, 941
Sau3AI	GATC	6 cut(s)	184, 190, 628, 732, 745, 964
Sau96I	GGNCC	3 cut(s)	46, 66, 914
SchI	GAGTC	2 cut(s)	505, 877
ScrFI	CCNGG	1 cut(s)	918
SduI	GDGCHC	1 cut(s)	696
SfaNI	GCATC	5 cut(s)	214, 229, 372, 727, 808
SmiMI	CAYNNNNRTG	1 cut(s)	117
SmlI	CTYRAG	2 cut(s)	30, 78
SmoI	CTYRAG	2 cut(s)	30, 78
Sse9I	AATT	5 cut(s)	263, 471, 646, 669, 771
SsiI	CCGC	2 cut(s)	611, 940
SspMI	CTAG	6 cut(s)	245, 312, 386, 521, 620, 845
SstI	GAGCTC	1 cut(s)	696
StyD4I	CCNGG	1 cut(s)	916
StyI	CCWWGG	3 cut(s)	42, 491, 960
TaiI	ACGT	2 cut(s)	870, 879
TaqI	TCGA	5 cut(s)	450, 696, 735, 933, 948
TasI	AATT	5 cut(s)	263, 471, 646, 669, 771
TauI	GCSGC	1 cut(s)	943
TfiI	GAWTC	4 cut(s)	7, 38, 109, 517
Tru1I	TTAA	1 cut(s)	684
Tru9I	TTAA	1 cut(s)	684
TscAI	CASTG	1 cut(s)	894
TseI	GCWGC	2 cut(s)	232, 349
TspDTI	ATGAA	2 cut(s)	84, 179
TspRI	CASTG	1 cut(s)	894
XapI	RAATTY	2 cut(s)	471, 669
XbaI	TCTAGA	1 cut(s)	619
XcmI	CCANNNNNNNNNTGG	1 cut(s)	967
XmnI	GAANNNNTTC	1 cut(s)	606
XspI	CTAG	6 cut(s)	245, 312, 386, 521, 620, 845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.