Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000681

Physical Location & Seq

Genomic Coordinates Reverse (-)

90404182 .. 90409476

Gene Structure 5295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG685400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1455 bp

ATGTATGATCATATGGAATTTGGTGCCTGCCACAGTATTTTCTCAACTTATTACACCCCAGTCAGAAGTGTACTTTCATCTCACCTGATGGACTTTGGTATGGAGTTAATAACATCGAGTAGTGGAGCTAATGCGGAAGAAATCATAGAGCAGCTTCAATGGCATAGGTTCTCTCAAGAAGAATGTGCCGACATTGATACATTTATTGGCATTGAGAAAGAGCCTCAAAACCAAGTTAAGCAACATGGTGAAGATAATGAAACCAATGGAGAGCAGATAAAGACTCCAGATATAGCAGTGCCTGAAGATGGAATTCAGGAAGATGGTCAGAAGACTCAGAAGCATGAGATCATTTATGGGAATAATATAGAACCTTCCCGCCATGTGATAACTGGTGAGGATCATCAAAGTGAACGAGAGGAGATGATGGAAATAGACTTGGTGCAACCAGAAAATCAGAGTTTTCAGATTACAAAAGAAGAGCATAGTCTAAGAAACTTAGAAGCTGACATGGAGAATAGGAAAAATGCTACATTTTCTCAAGAAGAATCCCTGGACCTTGATGTGCTTTCTGGGGCCAAGAAACCTCAAGAACGTGTTTGTTCATATGGAGAAGAGAATCATAATGATGAAGAGCCGACTAAGTTACAGGACATAATTGCACCAGATACCATGAAAAATATTCCACAAGAAGATCCAGATCCCCTTTCAGTTGCATATGATGGCAGTCCTGACACCAAGCAGCCAGATGCTCTAGGTATTACTACACCAAAATTGACGGCTGTTCCCAGACCAGTTTCCAAGAAATCGGATCAGTTTTCTAGGAAAAGAAAATGTGTCTTTGATGATATAGTAGTGCTGCCTAATGAGGTAATCAGGCAAAGCATACATGATGCTAGTGATTTGGTTGCTAAAAGAAAAAAAGTTCCCAAAAATGCCCATGCTGTTTGGAAAACTTGTCGAATTGGAAATCTTGCCCAGAATTTCTTGGAGCCATTGATATCTAACGTTTCGCAAGAGCTTAGATCCCTCTTATGCAAAAGGAAACTGAGGAAATTAAAGATCACTCCAGAGAAGTTAGATTTGTTGGACTGTCAAAGGACTGGTATATCAGAGCAAATGGAGGTTGTACATACAGAAACCGTTGAACCTGCAGAAGACTTGGATGTGTTAGAATATCCATGTACTGTTGGATTAGAACAAGCAGAAATTGCACCAGACACACCCGTCCTTCGCTCAAAATCAATCAAATCATTTCATAGTCCCAGGAGTCCTGAAGTTCCTGAAGTTCCTGATATGGATCTAGTAAGACCTGAGACATCTGGAAGGATAGAAAAAGAACCGTCTATGGGAGCAGAGCAAACTTTCCCTTCTGGAAGTGTAGAAGAAGTACCACCATCTCTAGATAGGGATGACGAGCATGACTTCAATTTTTTGAGTGAGGTAAAGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009987 GO:0016043 GO:0022402 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

484

Amino Acids

54.78

Weight (kDa)

4.73

Isoelectric Point (pI)

60.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840
fragaria_vesca	FvH4_6g53040 FvH4_6g53040 FvH4_6g53050 FvH4_6g53050
malus_domestica	MD09G1015100.v1.1 MD09G1015200.v1.1 MD17G1015200.v1.1
prunus_persica	Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1
pyrus_communis	pycom111g01230 pycom17g01230 pycom17g01240
rosa_chinensis	RchiOBHm_Chr2g0146031 RchiOBHm_Chr2g0172041 RchiOBHm_Chr2g0172061 RchiOBHm_Chr2g0172121 RchiOBHm_Chr2g0172131 RchiOBHm_Chr2g0172161 RchiOBHm_Chr2g0173841 RchiOBHm_Chr2g0174821 RchiOBHm_Chr2g0174831
rosa_laevigata	RLG00000022078 RLG00000022079 RLG00000022228 RLG00000022298 RLG00000022299 RLG00000032768
rosa_multiflora	Rmu_co8137076.1_g000001 Rmu_sc0001716.1_g000038 Rmu_sc0003188.1_g000021 Rmu_sc0015734.1_g000001 Rmu_sc0038259.1_g000001 Rmu_sc0038259.1_g000002 Rmu_sc0040737.1_g000001 Rmu_sc0041600.1_g000001 Rmu_ssc0000252.1_g000045
rosa_roxburghii	Rroxscaffold_2G00077660 Rroxscaffold_2G00080120 Rroxscaffold_2G00080130 Rroxscaffold_2G00080290
rosa_rugosa	Rorug02G0579500 Rorug02G0579600
rosa_samantha	Rh2AG632100 Rh2AG632200 Rh2AG656700 Rh2AG656800 Rh2AG660800 Rh2AG660900 Rh2BG645600 Rh2BG645700 Rh2BG667700 Rh2BG667800 Rh2BG672200 Rh2BG672300 Rh2CG627800 Rh2CG627900 Rh2CG635000 Rh2CG635100 Rh2DG658600 Rh2DG678300 Rh2DG685300 Rh2DG685400 Rh6AG066100 Rh6BG058900
rosa_wichuraiana	Rw2G053570 Rw2G054150 Rw2G054160 Rw6G005810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1226
Acc36I	ACCTGC	1 cut(s)	1159
AccB1I	GGYRCC	1 cut(s)	23
AciI	CCGC	2 cut(s)	134, 379
AclI	AACGTT	1 cut(s)	1008
AclWI	GGATC	6 cut(s)	408, 689, 695, 819, 1020, 1308
AcsI	RAATTY	3 cut(s)	17, 312, 982
AcuI	CTGAAG	3 cut(s)	324, 1296, 1305
AfaI	GTAC	5 cut(s)	72, 1131, 1186, 1392, 1451
AfiI	CCNNNNNNNGG	2 cut(s)	308, 1349
AflIII	ACRYGT	1 cut(s)	595
AgsI	TTSAA	3 cut(s)	158, 1148, 1429
AjnI	CCWGG	2 cut(s)	552, 1265
AluBI	AGCT	4 cut(s)	128, 154, 506, 1021
AluI	AGCT	4 cut(s)	128, 154, 506, 1021
Alw26I	GTCTC	1 cut(s)	1310
AlwI	GGATC	6 cut(s)	408, 689, 695, 819, 1020, 1308
AlwNI	CAGNNNCTG	1 cut(s)	302
AoxI	GGCC	1 cut(s)	576
ApeKI	GCWGC	3 cut(s)	151, 742, 859
ApoI	RAATTY	3 cut(s)	17, 312, 982
AspS9I	GGNCC	2 cut(s)	556, 576
AsuHPI	GGTGA	3 cut(s)	74, 260, 407
AvaII	GGWCC	1 cut(s)	556
BanI	GGYRCC	1 cut(s)	23
BbsI	GAAGAC	2 cut(s)	338, 1164
BbvI	GCAGC	3 cut(s)	163, 754, 846
BccI	CCATC	6 cut(s)	82, 302, 317, 421, 716, 1405
BceAI	ACGGC	1 cut(s)	795
BciT130I	CCWGG	2 cut(s)	554, 1267
BclI	TGATCA	1 cut(s)	7
BcoDI	GTCTC	1 cut(s)	1310
BfaI	CTAG	5 cut(s)	755, 822, 897, 1304, 1403
BfmI	CTRYAG	1 cut(s)	1152
BfuAI	ACCTGC	1 cut(s)	1159
BisI	GCNGC	3 cut(s)	152, 743, 860
BlsI	GCNGC	3 cut(s)	153, 744, 861
BmcAI	AGTACT	1 cut(s)	1451
Bme1390I	CCNGG	2 cut(s)	554, 1267
Bme18I	GGWCC	1 cut(s)	556
BmgT120I	GGNCC	2 cut(s)	556, 576
BmiI	GGNNCC	3 cut(s)	25, 577, 993
BmrFI	CCNGG	2 cut(s)	554, 1267
BmrI	ACTGGG	1 cut(s)	53
BmsI	GCATC	2 cut(s)	739, 883
BmuI	ACTGGG	1 cut(s)	53
BpiI	GAAGAC	2 cut(s)	338, 1164
BpmI	CTGGAG	2 cut(s)	270, 1053
BpuEI	CTTGAG	3 cut(s)	159, 525, 573
BsaBI	GATNNNNATC	2 cut(s)	699, 1299
BsaJI	CCNNGG	2 cut(s)	552, 1265
Bsc4I	CCNNNNNNNGG	2 cut(s)	308, 1349
Bse1I	ACTGG	4 cut(s)	59, 397, 794, 1108
Bse8I	GATNNNNATC	2 cut(s)	699, 1299
BseBI	CCWGG	2 cut(s)	554, 1267
BseDI	CCNNGG	2 cut(s)	552, 1265
BseGI	GGATG	2 cut(s)	1171, 1417
BseJI	GATNNNNATC	2 cut(s)	699, 1299
BseLI	CCNNNNNNNGG	2 cut(s)	308, 1349
BseMII	CTCAG	3 cut(s)	350, 1040, 1305
BseNI	ACTGG	4 cut(s)	59, 397, 794, 1108
BseRI	GAGGAG	1 cut(s)	434
BseXI	GCAGC	3 cut(s)	163, 754, 846
BshFI	GGCC	1 cut(s)	578
BshNI	GGYRCC	1 cut(s)	23
BslFI	GGGAC	1 cut(s)	1248
BslI	CCNNNNNNNGG	2 cut(s)	308, 1349
BsmAI	GTCTC	1 cut(s)	1310
BsmFI	GGGAC	1 cut(s)	1248
BsnI	GGCC	1 cut(s)	578
Bsp1407I	TGTACA	1 cut(s)	1129
Bsp143I	GATC	9 cut(s)	7, 348, 400, 694, 700, 811, 1025, 1062, 1300
BspACI	CCGC	2 cut(s)	134, 379
BspANI	GGCC	1 cut(s)	578
BspCNI	CTCAG	3 cut(s)	349, 1041, 1306
BspLI	GGNNCC	3 cut(s)	25, 577, 993
BspMAI	CTGCAG	1 cut(s)	1156
BspMI	ACCTGC	1 cut(s)	1159
BspPI	GGATC	6 cut(s)	408, 689, 695, 819, 1020, 1308
BspQI	GCTCTTC	2 cut(s)	474, 627
BspT107I	GGYRCC	1 cut(s)	23
BsrGI	TGTACA	1 cut(s)	1129
BsrI	ACTGG	4 cut(s)	59, 397, 794, 1108
BssECI	CCNNGG	2 cut(s)	552, 1265
BssMI	GATC	9 cut(s)	7, 348, 400, 694, 700, 811, 1025, 1062, 1300
Bst2UI	CCWGG	2 cut(s)	554, 1267
Bst4CI	ACNGT	5 cut(s)	35, 1094, 1144, 1189, 1344
Bst6I	CTCTTC	3 cut(s)	474, 609, 627
BstAPI	GCANNNNNTGC	1 cut(s)	1211
BstAUI	TGTACA	1 cut(s)	1129
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	7 cut(s)	336, 491, 499, 642, 1022, 1049, 1314
BstF5I	GGATG	2 cut(s)	1171, 1417
BstKTI	GATC	9 cut(s)	10, 351, 403, 697, 703, 814, 1028, 1065, 1303
BstMAI	GTCTC	1 cut(s)	1310
BstMBI	GATC	9 cut(s)	7, 348, 400, 694, 700, 811, 1025, 1062, 1300
BstMWI	GCNNNNNNNGC	2 cut(s)	160, 1211
BstNI	CCWGG	2 cut(s)	554, 1267
BstSCI	CCNGG	2 cut(s)	552, 1265
BstSFI	CTRYAG	1 cut(s)	1152
BstV1I	GCAGC	3 cut(s)	163, 754, 846
BstV2I	GAAGAC	2 cut(s)	338, 1164
BstX2I	RGATCY	4 cut(s)	694, 700, 1025, 1300
BstYI	RGATCY	4 cut(s)	694, 700, 1025, 1300
BsuRI	GGCC	1 cut(s)	578
BtsCI	GGATG	2 cut(s)	1171, 1417
BtsI	GCAGTG	1 cut(s)	303
BtsIMutI	CAGTG	1 cut(s)	303
BveI	ACCTGC	1 cut(s)	1159
Cac8I	GCNNGC	1 cut(s)	28
CaiI	CAGNNNCTG	1 cut(s)	302
Cfr13I	GGNCC	2 cut(s)	556, 576
Csp6I	GTAC	5 cut(s)	71, 1130, 1185, 1391, 1450
CviAII	CATG	9 cut(s)	245, 344, 383, 511, 673, 890, 941, 1182, 1421
CviQI	GTAC	5 cut(s)	71, 1130, 1185, 1391, 1450
DdeI	CTNAG	7 cut(s)	336, 491, 499, 642, 1022, 1049, 1314
DpnI	GATC	9 cut(s)	9, 350, 402, 696, 702, 813, 1027, 1064, 1302
DpnII	GATC	9 cut(s)	7, 348, 400, 694, 700, 811, 1025, 1062, 1300
DrdI	GACNNNNNNGTC	1 cut(s)	1226
DseDI	GACNNNNNNGTC	1 cut(s)	1226
Eam1104I	CTCTTC	3 cut(s)	474, 609, 627
EarI	CTCTTC	3 cut(s)	474, 609, 627
Eco32I	GATATC	1 cut(s)	1002
Eco47I	GGWCC	1 cut(s)	556
Eco57I	CTGAAG	3 cut(s)	324, 1296, 1305
EcoRI	GAATTC	1 cut(s)	312
EcoRII	CCWGG	2 cut(s)	552, 1265
EcoRV	GATATC	1 cut(s)	1002
FaeI	CATG	9 cut(s)	248, 347, 386, 514, 676, 893, 944, 1185, 1424
FaqI	GGGAC	1 cut(s)	1248
FatI	CATG	9 cut(s)	244, 343, 382, 510, 672, 889, 940, 1181, 1420
FauI	CCCGC	1 cut(s)	386
FauNDI	CATATG	3 cut(s)	12, 607, 718
FbaI	TGATCA	1 cut(s)	7
Fnu4HI	GCNGC	3 cut(s)	152, 743, 860
FokI	GGATG	2 cut(s)	1178, 1424
Fsp4HI	GCNGC	3 cut(s)	152, 743, 860
FspBI	CTAG	5 cut(s)	755, 822, 897, 1304, 1403
GluI	GCNGC	3 cut(s)	152, 743, 860
GsuI	CTGGAG	2 cut(s)	270, 1053
HaeIII	GGCC	1 cut(s)	578
Hin1II	CATG	9 cut(s)	248, 347, 386, 514, 676, 893, 944, 1185, 1424
HinfI	GANTC	5 cut(s)	283, 334, 548, 619, 1270
HphI	GGTGA	3 cut(s)	74, 260, 407
Hpy166II	GTNNAC	2 cut(s)	71, 413
Hpy188I	TCNGA	7 cut(s)	65, 330, 339, 459, 468, 811, 1114
Hpy8I	GTNNAC	2 cut(s)	71, 413
HpyAV	CCTTC	4 cut(s)	384, 1241, 1320, 1380
HpyCH4III	ACNGT	5 cut(s)	35, 1094, 1144, 1189, 1344
HpyCH4IV	ACGT	2 cut(s)	595, 1008
HpyCH4V	TGCA	6 cut(s)	445, 662, 716, 1038, 1154, 1214
HpyF10VI	GCNNNNNNNGC	2 cut(s)	160, 1211
HpyF3I	CTNAG	7 cut(s)	336, 491, 499, 642, 1022, 1049, 1314
HpySE526I	ACGT	2 cut(s)	595, 1008
Hsp92II	CATG	9 cut(s)	248, 347, 386, 514, 676, 893, 944, 1185, 1424
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	9 cut(s)	7, 348, 400, 694, 700, 811, 1025, 1062, 1300
LguI	GCTCTTC	2 cut(s)	474, 627
LmnI	GCTCC	3 cut(s)	125, 991, 1352
Lsp1109I	GCAGC	3 cut(s)	163, 754, 846
LweI	GCATC	2 cut(s)	739, 883
MaeI	CTAG	5 cut(s)	755, 822, 897, 1304, 1403
MaeII	ACGT	2 cut(s)	595, 1008
MaeIII	GTNAC	1 cut(s)	645
MalI	GATC	9 cut(s)	9, 350, 402, 696, 702, 813, 1027, 1064, 1302
MboI	GATC	9 cut(s)	7, 348, 400, 694, 700, 811, 1025, 1062, 1300
MflI	RGATCY	4 cut(s)	694, 700, 1025, 1300
MluCI	AATT	9 cut(s)	17, 312, 657, 773, 963, 982, 1055, 1209, 1429
MlyI	GAGTC	3 cut(s)	277, 328, 1279
MmeI	TCCRAC	2 cut(s)	1068, 1171
MnlI	CCTC	9 cut(s)	234, 391, 412, 597, 862, 1040, 1044, 1117, 1435
MseI	TTAA	3 cut(s)	107, 237, 1058
MslI	CAYNNNNRTG	2 cut(s)	408, 627
MspR9I	CCNGG	2 cut(s)	554, 1267
MvaI	CCWGG	2 cut(s)	554, 1267
MwoI	GCNNNNNNNGC	2 cut(s)	160, 1211
NdeI	CATATG	3 cut(s)	12, 607, 718
NdeII	GATC	9 cut(s)	7, 348, 400, 694, 700, 811, 1025, 1062, 1300
NlaIII	CATG	9 cut(s)	248, 347, 386, 514, 676, 893, 944, 1185, 1424
NlaIV	GGNNCC	3 cut(s)	25, 577, 993
PciSI	GCTCTTC	2 cut(s)	474, 627
PfeI	GAWTC	2 cut(s)	548, 619
PkrI	GCNGC	3 cut(s)	153, 744, 861
PleI	GAGTC	3 cut(s)	277, 328, 1278
PpsI	GAGTC	3 cut(s)	277, 328, 1278
Psp1406I	AACGTT	1 cut(s)	1008
Psp6I	CCWGG	2 cut(s)	552, 1265
PspGI	CCWGG	2 cut(s)	552, 1265
PspN4I	GGNNCC	3 cut(s)	25, 577, 993
PspPI	GGNCC	2 cut(s)	556, 576
PstI	CTGCAG	1 cut(s)	1156
PstNI	CAGNNNCTG	1 cut(s)	302
PsuI	RGATCY	4 cut(s)	694, 700, 1025, 1300
RsaI	GTAC	5 cut(s)	72, 1131, 1186, 1392, 1451
RsaNI	GTAC	5 cut(s)	71, 1130, 1185, 1391, 1450
RseI	CAYNNNNRTG	2 cut(s)	408, 627
SapI	GCTCTTC	2 cut(s)	474, 627
SaqAI	TTAA	3 cut(s)	107, 237, 1058
SatI	GCNGC	3 cut(s)	152, 743, 860
Sau3AI	GATC	9 cut(s)	7, 348, 400, 694, 700, 811, 1025, 1062, 1300
Sau96I	GGNCC	2 cut(s)	556, 576
ScaI	AGTACT	1 cut(s)	1451
SchI	GAGTC	3 cut(s)	277, 328, 1279
ScrFI	CCNGG	2 cut(s)	554, 1267
SfaNI	GCATC	2 cut(s)	739, 883
SfcI	CTRYAG	1 cut(s)	1152
SinI	GGWCC	1 cut(s)	556
SmiMI	CAYNNNNRTG	2 cut(s)	408, 627
SmlI	CTYRAG	3 cut(s)	174, 540, 588
SmoI	CTYRAG	3 cut(s)	174, 540, 588
Sse9I	AATT	9 cut(s)	17, 312, 657, 773, 963, 982, 1055, 1209, 1429
SsiI	CCGC	2 cut(s)	134, 379
SspI	AATATT	1 cut(s)	682
SspMI	CTAG	5 cut(s)	755, 822, 897, 1304, 1403
StyD4I	CCNGG	2 cut(s)	552, 1265
TaaI	ACNGT	5 cut(s)	35, 1094, 1144, 1189, 1344
TaiI	ACGT	2 cut(s)	598, 1011
TaqI	TCGA	2 cut(s)	116, 961
TasI	AATT	9 cut(s)	17, 312, 657, 773, 963, 982, 1055, 1209, 1429
TatI	WGTACW	4 cut(s)	70, 1129, 1184, 1449
TfiI	GAWTC	2 cut(s)	548, 619
Tru1I	TTAA	3 cut(s)	107, 237, 1058
Tru9I	TTAA	3 cut(s)	107, 237, 1058
TscAI	CASTG	1 cut(s)	303
TseI	GCWGC	3 cut(s)	151, 742, 859
TspDTI	ATGAA	6 cut(s)	66, 273, 594, 645, 689, 1247
TspRI	CASTG	1 cut(s)	303
VpaK11BI	GGWCC	1 cut(s)	556
XapI	RAATTY	3 cut(s)	17, 312, 982
XbaI	TCTAGA	1 cut(s)	1402
XcmI	CCANNNNNNNNNTGG	1 cut(s)	389
XspI	CTAG	5 cut(s)	755, 822, 897, 1304, 1403
ZrmI	AGTACT	1 cut(s)	1451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.