Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000681

Physical Location & Seq

Genomic Coordinates Forward (+)

81828448 .. 81831716

Gene Structure 3269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022228

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1398 bp

ATGAGGCTGTACTCTTCGGCTACAGGTGGAAAAGCTACAGCTCTTCAGAGAGCTAAGAAGTTCAAGCACTCTGAAAACTCGTTTCAGGTTTCCCATGAGCCCCTCTTATATCACAGGACATTTGCTCACATCAAGAAATGTGTGTCTAGCACAAAAGACAATGCACCTGCAGAAATGCTGTGTGCGGCTTATCACTCTGTTATCATACCGGATAGGTTTGAACTTGATGCTTTTGATATGGGGAGCCTTGAAGATGTCAGTGGTGAGCATTTGGCATCTCACAAAGAAATCACACTTAAAGCTTGTACAATTTCAAACAATTTCAGCATGATATGGAACAGAATGTGCAGATATGATCATGTGGAATTTGGTGCCTGCCGCGGTATTTTCTCAACTTATTACGCCTCAGTCAGAAGTGTTCTTTCATCTCACCTGATGGGCTTTGGTGTGGAGTTAATAGCATCGAGTAATGGAGCTAAATCGGAAGAAAAAGTAGAGCAGCTTCAATGGCATAGGTTCTCCCAAGAAGAATTTAAGCAATATGGTGAAGATAATGAAACCAATGGAGAGCAGATAAAGACTCCAGATATAGCAGTGCCTGAAGATGGAATTCAGGAAGAAGAACCTTCCTGCCATGTGATAAGTGGTGAGGATTATCAAAGTGAACGAGAGGAGATGACGGAAATAGACTTGGTGCAACCAGAAAATCAGAGTTTTCAGATTACAAGAGAAGAGCATAGTCTAAGAAACTTAGAAGCTGACACGGAGAAACTGAAAAATGTTACATTTTCTCAAGAAGAATCCCTGGGCCTTGATGTGAATCATAATGATGAAGAGCCAACTAAGTTACATGACGTGATTGCACCAGATACCATGAAAAGTATTCCGGAAGAACATCTAGATCCCCTCTCAGTTGCATATTATGGTAGTCCTGATGCCAAGCAGCCAGATGCTCTAGGTGTTACTACAACAAAATTGACCGCTGTTCCCAGACCAGCTTCCAAGAAGTTGAAAAAAAAAGTTCCCAAAAATGCCTATGCTATTTGGAGAACTTGTCGAAGTGGAAATCTTGCCCAGAATTTCTTGGAGCCATTGATATCTAACGTTTCGCAAGAACTTAGGTCCCTCTTATGCAAAAGGAAACTGAGGAAATTAAAGATTACTCCAGAGAAGTTAGATTTGTTGGACTGTCGAAGGACTGGTATATCAGAGCAAATAGAGGTTGTAAATACAGAAACTGTTGAACCTCCAGCAGACTTCCATGTGTTGGAATATCCATGTACTGTTGGATTAGAACAAGCAGAAATTGCAGCGGACACACCTGTTCTTCGCTCAAAATCAATCAAATCATTTCATAGTCCAAAGAGTCCCGAAGTTCCTGATAAGAATCTAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009987 GO:0016043 GO:0022402 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

466

Amino Acids

52.37

Weight (kDa)

5.53

Isoelectric Point (pI)

51.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840
fragaria_vesca	FvH4_6g53040 FvH4_6g53040 FvH4_6g53050 FvH4_6g53050
malus_domestica	MD09G1015100.v1.1 MD09G1015200.v1.1 MD17G1015200.v1.1
prunus_persica	Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1
pyrus_communis	pycom111g01230 pycom17g01230 pycom17g01240
rosa_chinensis	RchiOBHm_Chr2g0146031 RchiOBHm_Chr2g0172041 RchiOBHm_Chr2g0172061 RchiOBHm_Chr2g0172121 RchiOBHm_Chr2g0172131 RchiOBHm_Chr2g0172161 RchiOBHm_Chr2g0173841 RchiOBHm_Chr2g0174821 RchiOBHm_Chr2g0174831
rosa_laevigata	RLG00000022078 RLG00000022079 RLG00000022228 RLG00000022298 RLG00000022299 RLG00000032768
rosa_multiflora	Rmu_co8137076.1_g000001 Rmu_sc0001716.1_g000038 Rmu_sc0003188.1_g000021 Rmu_sc0015734.1_g000001 Rmu_sc0038259.1_g000001 Rmu_sc0038259.1_g000002 Rmu_sc0040737.1_g000001 Rmu_sc0041600.1_g000001 Rmu_ssc0000252.1_g000045
rosa_roxburghii	Rroxscaffold_2G00077660 Rroxscaffold_2G00080120 Rroxscaffold_2G00080130 Rroxscaffold_2G00080290
rosa_rugosa	Rorug02G0579500 Rorug02G0579600
rosa_samantha	Rh2AG632100 Rh2AG632200 Rh2AG656700 Rh2AG656800 Rh2AG660800 Rh2AG660900 Rh2BG645600 Rh2BG645700 Rh2BG667700 Rh2BG667800 Rh2BG672200 Rh2BG672300 Rh2CG627800 Rh2CG627900 Rh2CG635000 Rh2CG635100 Rh2DG658600 Rh2DG678300 Rh2DG685300 Rh2DG685400 Rh6AG066100 Rh6BG058900
rosa_wichuraiana	Rw2G053570 Rw2G054150 Rw2G054160 Rw6G005810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	175
Acc36I	ACCTGC	1 cut(s)	175
AccB1I	GGYRCC	1 cut(s)	371
AccB7I	CCANNNNNTGG	1 cut(s)	1267
AccII	CGCG	1 cut(s)	381
AccIII	TCCGGA	1 cut(s)	886
AciI	CCGC	5 cut(s)	185, 379, 381, 981, 1313
AclI	AACGTT	1 cut(s)	1104
AclWI	GGATC	1 cut(s)	896
AcsI	RAATTY	4 cut(s)	365, 530, 609, 1078
AcuI	CTGAAG	2 cut(s)	29, 621
AfaI	GTAC	3 cut(s)	11, 307, 1282
AfiI	CCNNNNNNNGG	2 cut(s)	605, 1267
AgsI	TTSAA	7 cut(s)	64, 221, 251, 315, 506, 1012, 1244
AjiI	CACGTC	1 cut(s)	856
AjnI	CCWGG	1 cut(s)	804
AluBI	AGCT	8 cut(s)	35, 41, 53, 302, 476, 502, 758, 998
AluI	AGCT	8 cut(s)	35, 41, 53, 302, 476, 502, 758, 998
AlwI	GGATC	1 cut(s)	896
AlwNI	CAGNNNCTG	2 cut(s)	599, 1238
Aor13HI	TCCGGA	1 cut(s)	886
AoxI	GGCC	1 cut(s)	808
ApeKI	GCWGC	3 cut(s)	499, 943, 1310
ApoI	RAATTY	4 cut(s)	365, 530, 609, 1078
AspS9I	GGNCC	2 cut(s)	808, 1122
AsuHPI	GGTGA	4 cut(s)	275, 422, 557, 659
AvaII	GGWCC	1 cut(s)	1122
BanI	GGYRCC	1 cut(s)	371
BanII	GRGCYC	1 cut(s)	102
BarI	GAAGNNNNNNTAC	2 cut(s)	486, 518
BbvI	GCAGC	3 cut(s)	511, 955, 1322
BccI	CCATC	2 cut(s)	430, 599
BciT130I	CCWGG	1 cut(s)	806
BclI	TGATCA	1 cut(s)	355
BfaI	CTAG	4 cut(s)	147, 899, 956, 1391
BfmI	CTRYAG	3 cut(s)	21, 36, 168
BfuAI	ACCTGC	1 cut(s)	175
BisI	GCNGC	5 cut(s)	186, 379, 500, 944, 1311
BlsI	GCNGC	5 cut(s)	187, 380, 501, 945, 1312
Bme1390I	CCNGG	1 cut(s)	806
Bme18I	GGWCC	1 cut(s)	1122
BmgBI	CACGTC	1 cut(s)	856
BmgT120I	GGNCC	2 cut(s)	808, 1122
BmiI	GGNNCC	4 cut(s)	245, 373, 1089, 1124
BmrFI	CCNGG	1 cut(s)	806
BmsI	GCATC	5 cut(s)	217, 284, 470, 925, 940
BpmI	CTGGAG	3 cut(s)	567, 1149, 1233
BpuEI	CTTGAG	1 cut(s)	777
BsaBI	GATNNNNATC	2 cut(s)	819, 1386
BsaJI	CCNNGG	3 cut(s)	379, 804, 805
BsaWI	WCCGGW	2 cut(s)	208, 886
BsaXI	ACNNNNNCTCC	2 cut(s)	1039, 1069
Bsc4I	CCNNNNNNNGG	2 cut(s)	605, 1267
Bse1I	ACTGG	1 cut(s)	1204
Bse8I	GATNNNNATC	2 cut(s)	819, 1386
BseAI	TCCGGA	1 cut(s)	886
BseBI	CCWGG	1 cut(s)	806
BseDI	CCNNGG	3 cut(s)	379, 804, 805
BseJI	GATNNNNATC	2 cut(s)	819, 1386
BseLI	CCNNNNNNNGG	2 cut(s)	605, 1267
BseMII	CTCAG	3 cut(s)	420, 924, 1136
BseNI	ACTGG	1 cut(s)	1204
BseRI	GAGGAG	1 cut(s)	686
BseXI	GCAGC	3 cut(s)	511, 955, 1322
BsgI	GTGCAG	1 cut(s)	367
Bsh1236I	CGCG	1 cut(s)	381
BshFI	GGCC	1 cut(s)	810
BshNI	GGYRCC	1 cut(s)	371
BsiSI	CCGG	2 cut(s)	209, 887
BslFI	GGGAC	2 cut(s)	1108, 1353
BslI	CCNNNNNNNGG	2 cut(s)	605, 1267
BsmFI	GGGAC	2 cut(s)	1108, 1353
BsnI	GGCC	1 cut(s)	810
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp13I	TCCGGA	1 cut(s)	886
Bsp1407I	TGTACA	1 cut(s)	305
Bsp143I	GATC	2 cut(s)	355, 901
BspACI	CCGC	5 cut(s)	185, 379, 381, 981, 1313
BspANI	GGCC	1 cut(s)	810
BspCNI	CTCAG	3 cut(s)	419, 923, 1137
BspEI	TCCGGA	1 cut(s)	886
BspFNI	CGCG	1 cut(s)	381
BspLI	GGNNCC	4 cut(s)	245, 373, 1089, 1124
BspMAI	CTGCAG	1 cut(s)	172
BspMI	ACCTGC	1 cut(s)	175
BspPI	GGATC	1 cut(s)	896
BspQI	GCTCTTC	3 cut(s)	48, 726, 828
BspT107I	GGYRCC	1 cut(s)	371
BsrGI	TGTACA	1 cut(s)	305
BsrI	ACTGG	1 cut(s)	1204
BssECI	CCNNGG	3 cut(s)	379, 804, 805
BssMI	GATC	2 cut(s)	355, 901
Bst2UI	CCWGG	1 cut(s)	806
Bst4CI	ACNGT	3 cut(s)	1190, 1240, 1285
Bst6I	CTCTTC	4 cut(s)	19, 48, 726, 828
BstAPI	GCANNNNNTGC	1 cut(s)	1307
BstAUI	TGTACA	1 cut(s)	305
BstC8I	GCNNGC	1 cut(s)	376
BstDEI	CTNAG	8 cut(s)	54, 406, 743, 751, 843, 910, 1118, 1145
BstDSI	CCRYGG	1 cut(s)	379
BstFNI	CGCG	1 cut(s)	381
BstKTI	GATC	2 cut(s)	358, 904
BstMBI	GATC	2 cut(s)	355, 901
BstMWI	GCNNNNNNNGC	2 cut(s)	508, 1307
BstNI	CCWGG	1 cut(s)	806
BstSCI	CCNGG	1 cut(s)	804
BstSFI	CTRYAG	3 cut(s)	21, 36, 168
BstUI	CGCG	1 cut(s)	381
BstV1I	GCAGC	3 cut(s)	511, 955, 1322
BstX2I	RGATCY	1 cut(s)	901
BstYI	RGATCY	1 cut(s)	901
BsuRI	GGCC	1 cut(s)	810
BtgI	CCRYGG	1 cut(s)	379
BtrI	CACGTC	1 cut(s)	856
BtsI	GCAGTG	1 cut(s)	600
BtsIMutI	CAGTG	2 cut(s)	265, 600
BveI	ACCTGC	1 cut(s)	175
Cac8I	GCNNGC	1 cut(s)	376
CaiI	CAGNNNCTG	2 cut(s)	599, 1238
Cfr13I	GGNCC	2 cut(s)	808, 1122
Cfr42I	CCGCGG	1 cut(s)	382
Csp6I	GTAC	3 cut(s)	10, 306, 1281
CviAII	CATG	8 cut(s)	95, 328, 359, 635, 851, 874, 1262, 1278
CviQI	GTAC	3 cut(s)	10, 306, 1281
DdeI	CTNAG	8 cut(s)	54, 406, 743, 751, 843, 910, 1118, 1145
DpnI	GATC	2 cut(s)	357, 903
DpnII	GATC	2 cut(s)	355, 901
Eam1104I	CTCTTC	4 cut(s)	19, 48, 726, 828
EarI	CTCTTC	4 cut(s)	19, 48, 726, 828
Eco24I	GRGCYC	1 cut(s)	102
Eco32I	GATATC	1 cut(s)	1098
Eco47I	GGWCC	1 cut(s)	1122
Eco57I	CTGAAG	2 cut(s)	29, 621
EcoO109I	RGGNCCY	1 cut(s)	1122
EcoRI	GAATTC	1 cut(s)	609
EcoRII	CCWGG	1 cut(s)	804
EcoRV	GATATC	1 cut(s)	1098
EcoT38I	GRGCYC	1 cut(s)	102
FaeI	CATG	8 cut(s)	98, 331, 362, 638, 854, 877, 1265, 1281
FaqI	GGGAC	2 cut(s)	1108, 1353
FatI	CATG	8 cut(s)	94, 327, 358, 634, 850, 873, 1261, 1277
FbaI	TGATCA	1 cut(s)	355
Fnu4HI	GCNGC	5 cut(s)	186, 379, 500, 944, 1311
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	5 cut(s)	186, 379, 500, 944, 1311
FspBI	CTAG	4 cut(s)	147, 899, 956, 1391
GluI	GCNGC	5 cut(s)	186, 379, 500, 944, 1311
GsuI	CTGGAG	3 cut(s)	567, 1149, 1233
HaeIII	GGCC	1 cut(s)	810
HapII	CCGG	2 cut(s)	209, 887
Hin1II	CATG	8 cut(s)	98, 331, 362, 638, 854, 877, 1265, 1281
HindIII	AAGCTT	1 cut(s)	300
HinfI	GANTC	5 cut(s)	580, 800, 820, 1366, 1387
HpaII	CCGG	2 cut(s)	209, 887
HphI	GGTGA	4 cut(s)	275, 422, 557, 659
Hpy166II	GTNNAC	1 cut(s)	665
Hpy188I	TCNGA	7 cut(s)	48, 73, 413, 484, 711, 720, 1210
Hpy8I	GTNNAC	1 cut(s)	665
HpyAV	CCTTC	2 cut(s)	636, 1188
HpyCH4III	ACNGT	3 cut(s)	1190, 1240, 1285
HpyCH4IV	ACGT	2 cut(s)	855, 1104
HpyCH4V	TGCA	8 cut(s)	164, 170, 348, 697, 863, 917, 1134, 1310
HpyF10VI	GCNNNNNNNGC	2 cut(s)	508, 1307
HpyF3I	CTNAG	8 cut(s)	54, 406, 743, 751, 843, 910, 1118, 1145
HpySE526I	ACGT	2 cut(s)	855, 1104
Hsp92II	CATG	8 cut(s)	98, 331, 362, 638, 854, 877, 1265, 1281
Kpn2I	TCCGGA	1 cut(s)	886
Ksp22I	TGATCA	1 cut(s)	355
KspI	CCGCGG	1 cut(s)	382
Kzo9I	GATC	2 cut(s)	355, 901
LguI	GCTCTTC	3 cut(s)	48, 726, 828
LmnI	GCTCC	3 cut(s)	243, 473, 1087
Lsp1109I	GCAGC	3 cut(s)	511, 955, 1322
LweI	GCATC	5 cut(s)	217, 284, 470, 925, 940
MaeI	CTAG	4 cut(s)	147, 899, 956, 1391
MaeII	ACGT	2 cut(s)	855, 1104
MaeIII	GTNAC	3 cut(s)	781, 846, 961
MalI	GATC	2 cut(s)	357, 903
MboI	GATC	2 cut(s)	355, 901
MflI	RGATCY	1 cut(s)	901
MhlI	GDGCHC	1 cut(s)	102
MluCI	AATT	9 cut(s)	309, 319, 365, 530, 609, 974, 1078, 1151, 1305
MlyI	GAGTC	2 cut(s)	574, 1375
MmeI	TCCRAC	3 cut(s)	1164, 1248, 1267
MnlI	CCTC	9 cut(s)	113, 415, 643, 664, 917, 1136, 1140, 1213, 1257
MroI	TCCGGA	1 cut(s)	886
MseI	TTAA	4 cut(s)	297, 455, 534, 1154
MslI	CAYNNNNRTG	1 cut(s)	828
MspA1I	CMGCKG	3 cut(s)	381, 983, 1313
MspI	CCGG	2 cut(s)	209, 887
MspR9I	CCNGG	1 cut(s)	806
MvaI	CCWGG	1 cut(s)	806
MvnI	CGCG	1 cut(s)	381
MwoI	GCNNNNNNNGC	2 cut(s)	508, 1307
NdeII	GATC	2 cut(s)	355, 901
NlaIII	CATG	8 cut(s)	98, 331, 362, 638, 854, 877, 1265, 1281
NlaIV	GGNNCC	4 cut(s)	245, 373, 1089, 1124
PaqCI	CACCTGC	1 cut(s)	175
PasI	CCCWGGG	1 cut(s)	805
PciSI	GCTCTTC	3 cut(s)	48, 726, 828
PfeI	GAWTC	3 cut(s)	800, 820, 1387
PflMI	CCANNNNNTGG	1 cut(s)	1267
PkrI	GCNGC	5 cut(s)	187, 380, 501, 945, 1312
PleI	GAGTC	2 cut(s)	574, 1374
PpsI	GAGTC	2 cut(s)	574, 1374
PpuMI	RGGWCCY	1 cut(s)	1122
Psp1406I	AACGTT	1 cut(s)	1104
Psp5II	RGGWCCY	1 cut(s)	1122
Psp6I	CCWGG	1 cut(s)	804
PspGI	CCWGG	1 cut(s)	804
PspN4I	GGNNCC	4 cut(s)	245, 373, 1089, 1124
PspPI	GGNCC	2 cut(s)	808, 1122
PspPPI	RGGWCCY	1 cut(s)	1122
PstI	CTGCAG	1 cut(s)	172
PstNI	CAGNNNCTG	2 cut(s)	599, 1238
PsuI	RGATCY	1 cut(s)	901
RsaI	GTAC	3 cut(s)	11, 307, 1282
RsaNI	GTAC	3 cut(s)	10, 306, 1281
RseI	CAYNNNNRTG	1 cut(s)	828
SacII	CCGCGG	1 cut(s)	382
SapI	GCTCTTC	3 cut(s)	48, 726, 828
SaqAI	TTAA	4 cut(s)	297, 455, 534, 1154
SatI	GCNGC	5 cut(s)	186, 379, 500, 944, 1311
Sau3AI	GATC	2 cut(s)	355, 901
Sau96I	GGNCC	2 cut(s)	808, 1122
SchI	GAGTC	2 cut(s)	574, 1375
ScrFI	CCNGG	1 cut(s)	806
SduI	GDGCHC	1 cut(s)	102
SfaNI	GCATC	5 cut(s)	217, 284, 470, 925, 940
SfcI	CTRYAG	3 cut(s)	21, 36, 168
Sfr303I	CCGCGG	1 cut(s)	382
SgrBI	CCGCGG	1 cut(s)	382
SinI	GGWCC	1 cut(s)	1122
SmiMI	CAYNNNNRTG	1 cut(s)	828
SmlI	CTYRAG	1 cut(s)	792
SmoI	CTYRAG	1 cut(s)	792
Sse9I	AATT	9 cut(s)	309, 319, 365, 530, 609, 974, 1078, 1151, 1305
SsiI	CCGC	5 cut(s)	185, 379, 381, 981, 1313
SspMI	CTAG	4 cut(s)	147, 899, 956, 1391
StyD4I	CCNGG	1 cut(s)	804
TaaI	ACNGT	3 cut(s)	1190, 1240, 1285
TaiI	ACGT	2 cut(s)	858, 1107
TaqI	TCGA	3 cut(s)	464, 1057, 1192
TasI	AATT	9 cut(s)	309, 319, 365, 530, 609, 974, 1078, 1151, 1305
TatI	WGTACW	3 cut(s)	9, 305, 1280
TauI	GCSGC	2 cut(s)	188, 381
TfiI	GAWTC	3 cut(s)	800, 820, 1387
Tru1I	TTAA	4 cut(s)	297, 455, 534, 1154
Tru9I	TTAA	4 cut(s)	297, 455, 534, 1154
TscAI	CASTG	2 cut(s)	265, 600
TseI	GCWGC	3 cut(s)	499, 943, 1310
TspDTI	ATGAA	5 cut(s)	414, 570, 846, 890, 1343
TspGWI	ACGGA	2 cut(s)	695, 779
TspRI	CASTG	2 cut(s)	265, 600
Van91I	CCANNNNNTGG	1 cut(s)	1267
VpaK11BI	GGWCC	1 cut(s)	1122
XapI	RAATTY	4 cut(s)	365, 530, 609, 1078
XbaI	TCTAGA	1 cut(s)	898
XcmI	CCANNNNNNNNNTGG	1 cut(s)	641
XspI	CTAG	4 cut(s)	147, 899, 956, 1391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.