Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000681

Physical Location & Seq

Genomic Coordinates Reverse (-)

88004814 .. 88005769

Gene Structure 956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG667800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGCTCTGTGCTGCTTATCACTCTGTTATCATACCGCATAGGTTTGAACTTGATGCTTTTGATATGGGGAGCCTTGAAGATGCCGGTGGTGTACTTTCATCTCACCTGATGGACTTTGGTATGGAGTTAATAACATCGAGTAATGGAGCTATAACTCGGAAGAAATCGTCGAGCAGCTTCAATGGCATAGGTTCTTTCAGGAAGAATGTGCCGACATTGATACATTCATTGGCGTTGAGAAAGAGCCTCAAAACTAACTTATGCAATATGGTGAAGATAATGAAACCAATGGAGAGCAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009987 GO:0016043 GO:0022402 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

100

Amino Acids

10.99

Weight (kDa)

9.39

Isoelectric Point (pI)

23.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840
fragaria_vesca	FvH4_6g53040 FvH4_6g53040 FvH4_6g53050 FvH4_6g53050
malus_domestica	MD09G1015100.v1.1 MD09G1015200.v1.1 MD17G1015200.v1.1
prunus_persica	Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1
pyrus_communis	pycom111g01230 pycom17g01230 pycom17g01240
rosa_chinensis	RchiOBHm_Chr2g0146031 RchiOBHm_Chr2g0172041 RchiOBHm_Chr2g0172061 RchiOBHm_Chr2g0172121 RchiOBHm_Chr2g0172131 RchiOBHm_Chr2g0172161 RchiOBHm_Chr2g0173841 RchiOBHm_Chr2g0174821 RchiOBHm_Chr2g0174831
rosa_laevigata	RLG00000022078 RLG00000022079 RLG00000022228 RLG00000022298 RLG00000022299 RLG00000032768
rosa_multiflora	Rmu_co8137076.1_g000001 Rmu_sc0001716.1_g000038 Rmu_sc0003188.1_g000021 Rmu_sc0015734.1_g000001 Rmu_sc0038259.1_g000001 Rmu_sc0038259.1_g000002 Rmu_sc0040737.1_g000001 Rmu_sc0041600.1_g000001 Rmu_ssc0000252.1_g000045
rosa_roxburghii	Rroxscaffold_2G00077660 Rroxscaffold_2G00080120 Rroxscaffold_2G00080130 Rroxscaffold_2G00080290
rosa_rugosa	Rorug02G0579500 Rorug02G0579600
rosa_samantha	Rh2AG632100 Rh2AG632200 Rh2AG656700 Rh2AG656800 Rh2AG660800 Rh2AG660900 Rh2BG645600 Rh2BG645700 Rh2BG667700 Rh2BG667800 Rh2BG672200 Rh2BG672300 Rh2CG627800 Rh2CG627900 Rh2CG635000 Rh2CG635100 Rh2DG658600 Rh2DG678300 Rh2DG685300 Rh2DG685400 Rh6AG066100 Rh6BG058900
rosa_wichuraiana	Rw2G053570 Rw2G054150 Rw2G054160 Rw6G005810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	35
AfaI	GTAC	1 cut(s)	93
AgsI	TTSAA	3 cut(s)	47, 77, 181
AluBI	AGCT	2 cut(s)	149, 177
AluI	AGCT	2 cut(s)	149, 177
ApeKI	GCWGC	2 cut(s)	11, 174
AsuHPI	GGTGA	2 cut(s)	95, 283
BbvI	GCAGC	1 cut(s)	186
BccI	CCATC	1 cut(s)	103
BisI	GCNGC	2 cut(s)	12, 175
BlsI	GCNGC	2 cut(s)	13, 176
BmiI	GGNNCC	1 cut(s)	71
BmsI	GCATC	2 cut(s)	43, 70
Bse118I	RCCGGY	1 cut(s)	83
BseXI	GCAGC	1 cut(s)	186
BsiSI	CCGG	1 cut(s)	84
BspACI	CCGC	1 cut(s)	35
BspLI	GGNNCC	1 cut(s)	71
BsrFI	RCCGGY	1 cut(s)	83
BssAI	RCCGGY	1 cut(s)	83
BstMWI	GCNNNNNNNGC	1 cut(s)	183
BstV1I	GCAGC	1 cut(s)	186
Cfr10I	RCCGGY	1 cut(s)	83
Csp6I	GTAC	1 cut(s)	92
CviJI	RGCY	4 cut(s)	72, 149, 177, 246
CviKI_1	RGCY	4 cut(s)	72, 149, 177, 246
CviQI	GTAC	1 cut(s)	92
FaiI	YATR	8 cut(s)	32, 39, 65, 122, 152, 188, 262, 269
Fnu4HI	GCNGC	2 cut(s)	12, 175
Fsp4HI	GCNGC	2 cut(s)	12, 175
GluI	GCNGC	2 cut(s)	12, 175
HapII	CCGG	1 cut(s)	84
HpaII	CCGG	1 cut(s)	84
HphI	GGTGA	2 cut(s)	95, 283
Hpy166II	GTNNAC	1 cut(s)	92
Hpy188I	TCNGA	1 cut(s)	159
Hpy188III	TCNNGA	1 cut(s)	199
Hpy8I	GTNNAC	1 cut(s)	92
Hpy99I	CGWCG	1 cut(s)	172
HpyCH4V	TGCA	1 cut(s)	264
HpyF10VI	GCNNNNNNNGC	1 cut(s)	183
LmnI	GCTCC	2 cut(s)	69, 146
LpnPI	CCDG	3 cut(s)	97, 119, 184
Lsp1109I	GCAGC	1 cut(s)	186
LweI	GCATC	2 cut(s)	43, 70
MboII	GAAGA	4 cut(s)	89, 172, 214, 286
MnlI	CCTC	1 cut(s)	257
MseI	TTAA	1 cut(s)	128
MspI	CCGG	1 cut(s)	84
MwoI	GCNNNNNNNGC	1 cut(s)	183
NlaIV	GGNNCC	1 cut(s)	71
PkrI	GCNGC	2 cut(s)	13, 176
PspN4I	GGNNCC	1 cut(s)	71
RsaI	GTAC	1 cut(s)	93
RsaNI	GTAC	1 cut(s)	92
SaqAI	TTAA	1 cut(s)	128
SatI	GCNGC	2 cut(s)	12, 175
SetI	ASST	5 cut(s)	44, 108, 151, 179, 193
SfaNI	GCATC	2 cut(s)	43, 70
SgeI	CNNG	8 cut(s)	62, 86, 96, 118, 150, 168, 183, 211
SsiI	CCGC	1 cut(s)	35
TaqI	TCGA	2 cut(s)	137, 170
TatI	WGTACW	1 cut(s)	91
Tru1I	TTAA	1 cut(s)	128
Tru9I	TTAA	1 cut(s)	128
TseI	GCWGC	2 cut(s)	11, 174
TspDTI	ATGAA	3 cut(s)	87, 216, 296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.