Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000681

Physical Location & Seq

Genomic Coordinates Forward (+)

85618501 .. 85619362

Gene Structure 862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53942

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGATTGCACCAGATACCATAAAAAGTATTCTGGAAGAAGATCCAGATCCCCTCTCAGTTGCATATGATGGCAGTCCTGATGCCAAGCAGCCATATACTCTAGGTGTTACTACACCAAAATTGACGTCTGTTCCCAGACCAGCTTCCAAGAAGTCGGCTCGGATTTCTAGGAAAAGAAACTGTGTCTTTGATGATATAGTAGTGCTGCCTAATGAGGCAATCAGGCAAAGTATACATGATGCTAGTGACTTGGTTGCTAAAAAGAAAGAAGTTCCCAAAAATGCCCATGCTGTTTGGAAAACTAATCGAATTGGAAATCTTGCGCAGAATTTCTTGGAGCCATTGATATCTAGTGATTTAACTGTCATTTTTTTTTTGATACATTTACTGTCACTATTTCCTTTCTGGTTCATTAGTTGTGAAACCATTCATAACCCTATTTCTGTGATTCTATTAGACGTTTCGCAAGAGCTTAGGTCCCTCTCATGCAAAAGGAAATTTAGGAAATTAAGGAGTACTCCCGAGAAGTTAGATTTGTTGGCCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009987 GO:0016043 GO:0022402 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

182

Amino Acids

20.43

Weight (kDa)

9.08

Isoelectric Point (pI)

51.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840
fragaria_vesca	FvH4_6g53040 FvH4_6g53040 FvH4_6g53050 FvH4_6g53050
malus_domestica	MD09G1015100.v1.1 MD09G1015200.v1.1 MD17G1015200.v1.1
prunus_persica	Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1
pyrus_communis	pycom111g01230 pycom17g01230 pycom17g01240
rosa_chinensis	RchiOBHm_Chr2g0146031 RchiOBHm_Chr2g0172041 RchiOBHm_Chr2g0172061 RchiOBHm_Chr2g0172121 RchiOBHm_Chr2g0172131 RchiOBHm_Chr2g0172161 RchiOBHm_Chr2g0173841 RchiOBHm_Chr2g0174821 RchiOBHm_Chr2g0174831
rosa_laevigata	RLG00000022078 RLG00000022079 RLG00000022228 RLG00000022298 RLG00000022299 RLG00000032768
rosa_multiflora	Rmu_co8137076.1_g000001 Rmu_sc0001716.1_g000038 Rmu_sc0003188.1_g000021 Rmu_sc0015734.1_g000001 Rmu_sc0038259.1_g000001 Rmu_sc0038259.1_g000002 Rmu_sc0040737.1_g000001 Rmu_sc0041600.1_g000001 Rmu_ssc0000252.1_g000045
rosa_roxburghii	Rroxscaffold_2G00077660 Rroxscaffold_2G00080120 Rroxscaffold_2G00080130 Rroxscaffold_2G00080290
rosa_rugosa	Rorug02G0579500 Rorug02G0579600
rosa_samantha	Rh2AG632100 Rh2AG632200 Rh2AG656700 Rh2AG656800 Rh2AG660800 Rh2AG660900 Rh2BG645600 Rh2BG645700 Rh2BG667700 Rh2BG667800 Rh2BG672200 Rh2BG672300 Rh2CG627800 Rh2CG627900 Rh2CG635000 Rh2CG635100 Rh2DG658600 Rh2DG678300 Rh2DG685300 Rh2DG685400 Rh6AG066100 Rh6BG058900
rosa_wichuraiana	Rw2G053570 Rw2G054150 Rw2G054160 Rw6G005810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	128
Acc16I	TGCGCA	1 cut(s)	324
AccI	GTMKAC	1 cut(s)	232
AclWI	GGATC	2 cut(s)	35, 41
AcsI	RAATTY	2 cut(s)	328, 497
AcyI	GRCGYC	1 cut(s)	125
AfaI	GTAC	1 cut(s)	517
AluBI	AGCT	2 cut(s)	143, 472
AluI	AGCT	2 cut(s)	143, 472
AlwI	GGATC	2 cut(s)	35, 41
Ama87I	CYCGRG	1 cut(s)	521
AoxI	GGCC	1 cut(s)	540
ApeKI	GCWGC	2 cut(s)	88, 205
ApoI	RAATTY	2 cut(s)	328, 497
ArsI	GACNNNNNNTTYG	2 cut(s)	110, 142
Asp700I	GAANNNNTTC	1 cut(s)	426
AspLEI	GCGC	1 cut(s)	325
AspS9I	GGNCC	1 cut(s)	477
AvaI	CYCGRG	1 cut(s)	521
AvaII	GGWCC	1 cut(s)	477
BbvI	GCAGC	2 cut(s)	100, 192
BccI	CCATC	1 cut(s)	62
BfaI	CTAG	4 cut(s)	101, 168, 243, 351
BisI	GCNGC	2 cut(s)	89, 206
BlsI	GCNGC	2 cut(s)	90, 207
BmcAI	AGTACT	1 cut(s)	517
Bme18I	GGWCC	1 cut(s)	477
BmeT110I	CYCGRG	1 cut(s)	521
BmgT120I	GGNCC	1 cut(s)	477
BmiI	GGNNCC	2 cut(s)	339, 479
BmsI	GCATC	2 cut(s)	70, 229
Bpu10I	CCTNAGC	1 cut(s)	473
BsaBI	GATNNNNATC	1 cut(s)	45
BsaHI	GRCGYC	1 cut(s)	125
Bse8I	GATNNNNATC	1 cut(s)	45
BseJI	GATNNNNATC	1 cut(s)	45
BseMII	CTCAG	1 cut(s)	69
BseXI	GCAGC	2 cut(s)	100, 192
BshFI	GGCC	1 cut(s)	542
BsiHKCI	CYCGRG	1 cut(s)	521
BslFI	GGGAC	1 cut(s)	463
BsmFI	GGGAC	1 cut(s)	463
BsnI	GGCC	1 cut(s)	542
BsoBI	CYCGRG	1 cut(s)	521
Bsp143I	GATC	2 cut(s)	40, 46
BspANI	GGCC	1 cut(s)	542
BspCNI	CTCAG	1 cut(s)	68
BspLI	GGNNCC	2 cut(s)	339, 479
BspPI	GGATC	2 cut(s)	35, 41
BssMI	GATC	2 cut(s)	40, 46
BssNAI	GTATAC	1 cut(s)	233
BssNI	GRCGYC	1 cut(s)	125
Bst1107I	GTATAC	1 cut(s)	233
Bst4CI	ACNGT	3 cut(s)	182, 364, 390
BstACI	GRCGYC	1 cut(s)	125
BstDEI	CTNAG	2 cut(s)	55, 473
BstHHI	GCGC	1 cut(s)	325
BstKTI	GATC	2 cut(s)	43, 49
BstMBI	GATC	2 cut(s)	40, 46
BstV1I	GCAGC	2 cut(s)	100, 192
BstX2I	RGATCY	2 cut(s)	40, 46
BstYI	RGATCY	2 cut(s)	40, 46
BstZ17I	GTATAC	1 cut(s)	233
BsuRI	GGCC	1 cut(s)	542
CfoI	GCGC	1 cut(s)	325
Cfr13I	GGNCC	1 cut(s)	477
Csp6I	GTAC	1 cut(s)	516
CviAII	CATG	3 cut(s)	236, 287, 486
CviJI	RGCY	6 cut(s)	91, 143, 158, 340, 472, 542
CviKI_1	RGCY	6 cut(s)	91, 143, 158, 340, 472, 542
CviQI	GTAC	1 cut(s)	516
DdeI	CTNAG	2 cut(s)	55, 473
DpnI	GATC	2 cut(s)	42, 48
DpnII	GATC	2 cut(s)	40, 46
Eco32I	GATATC	1 cut(s)	348
Eco47I	GGWCC	1 cut(s)	477
Eco88I	CYCGRG	1 cut(s)	521
EcoO109I	RGGNCCY	1 cut(s)	477
EcoRV	GATATC	1 cut(s)	348
FaeI	CATG	3 cut(s)	239, 290, 489
FaqI	GGGAC	1 cut(s)	463
FatI	CATG	3 cut(s)	235, 286, 485
FauNDI	CATATG	1 cut(s)	64
FblI	GTMKAC	1 cut(s)	232
Fnu4HI	GCNGC	2 cut(s)	89, 206
Fsp4HI	GCNGC	2 cut(s)	89, 206
FspBI	CTAG	4 cut(s)	101, 168, 243, 351
FspI	TGCGCA	1 cut(s)	324
GlaI	GCGC	1 cut(s)	324
GluI	GCNGC	2 cut(s)	89, 206
HaeIII	GGCC	1 cut(s)	542
HhaI	GCGC	1 cut(s)	325
Hin1I	GRCGYC	1 cut(s)	125
Hin1II	CATG	3 cut(s)	239, 290, 489
Hin6I	GCGC	1 cut(s)	323
HinP1I	GCGC	1 cut(s)	323
HinfI	GANTC	1 cut(s)	448
Hpy166II	GTNNAC	1 cut(s)	233
Hpy188I	TCNGA	1 cut(s)	162
Hpy188III	TCNNGA	4 cut(s)	32, 44, 77, 521
Hpy8I	GTNNAC	1 cut(s)	233
HpyCH4III	ACNGT	3 cut(s)	182, 364, 390
HpyCH4IV	ACGT	2 cut(s)	125, 459
HpyCH4V	TGCA	3 cut(s)	8, 62, 489
HpyF3I	CTNAG	2 cut(s)	55, 473
HpySE526I	ACGT	2 cut(s)	125, 459
Hsp92I	GRCGYC	1 cut(s)	125
Hsp92II	CATG	3 cut(s)	239, 290, 489
HspAI	GCGC	1 cut(s)	323
Kzo9I	GATC	2 cut(s)	40, 46
LmnI	GCTCC	1 cut(s)	337
LpnPI	CCDG	8 cut(s)	17, 24, 57, 90, 148, 153, 208, 391
Lsp1109I	GCAGC	2 cut(s)	100, 192
LweI	GCATC	2 cut(s)	70, 229
MaeI	CTAG	4 cut(s)	101, 168, 243, 351
MaeII	ACGT	2 cut(s)	125, 459
MaeIII	GTNAC	3 cut(s)	106, 245, 390
MalI	GATC	2 cut(s)	42, 48
MboI	GATC	2 cut(s)	40, 46
MboII	GAAGA	2 cut(s)	47, 50
MflI	RGATCY	2 cut(s)	40, 46
MluCI	AATT	5 cut(s)	119, 309, 328, 497, 506
MnlI	CCTC	3 cut(s)	62, 208, 491
MroXI	GAANNNNTTC	1 cut(s)	426
MseI	TTAA	2 cut(s)	359, 509
NdeI	CATATG	1 cut(s)	64
NdeII	GATC	2 cut(s)	40, 46
NlaIII	CATG	3 cut(s)	239, 290, 489
NlaIV	GGNNCC	2 cut(s)	339, 479
NmuCI	GTSAC	2 cut(s)	245, 390
NsbI	TGCGCA	1 cut(s)	324
PdmI	GAANNNNTTC	1 cut(s)	426
PfeI	GAWTC	1 cut(s)	448
PkrI	GCNGC	2 cut(s)	90, 207
PpuMI	RGGWCCY	1 cut(s)	477
Psp5II	RGGWCCY	1 cut(s)	477
PspN4I	GGNNCC	2 cut(s)	339, 479
PspPI	GGNCC	1 cut(s)	477
PspPPI	RGGWCCY	1 cut(s)	477
PsuI	RGATCY	2 cut(s)	40, 46
RsaI	GTAC	1 cut(s)	517
RsaNI	GTAC	1 cut(s)	516
SaqAI	TTAA	2 cut(s)	359, 509
SatI	GCNGC	2 cut(s)	89, 206
Sau3AI	GATC	2 cut(s)	40, 46
Sau96I	GGNCC	1 cut(s)	477
ScaI	AGTACT	1 cut(s)	517
SetI	ASST	6 cut(s)	106, 128, 145, 462, 474, 479
SfaNI	GCATC	2 cut(s)	70, 229
SinI	GGWCC	1 cut(s)	477
Sse9I	AATT	5 cut(s)	119, 309, 328, 497, 506
SspMI	CTAG	4 cut(s)	101, 168, 243, 351
TaaI	ACNGT	3 cut(s)	182, 364, 390
TaiI	ACGT	2 cut(s)	128, 462
TaqI	TCGA	1 cut(s)	307
TasI	AATT	5 cut(s)	119, 309, 328, 497, 506
TatI	WGTACW	1 cut(s)	515
TfiI	GAWTC	1 cut(s)	448
Tru1I	TTAA	2 cut(s)	359, 509
Tru9I	TTAA	2 cut(s)	359, 509
TseFI	GTSAC	2 cut(s)	245, 390
TseI	GCWGC	2 cut(s)	88, 205
Tsp45I	GTSAC	2 cut(s)	245, 390
TspDTI	ATGAA	2 cut(s)	400, 419
VpaK11BI	GGWCC	1 cut(s)	477
XapI	RAATTY	2 cut(s)	328, 497
XmiI	GTMKAC	1 cut(s)	232
XmnI	GAANNNNTTC	1 cut(s)	426
XspI	CTAG	4 cut(s)	101, 168, 243, 351
ZraI	GACGTC	1 cut(s)	126
ZrmI	AGTACT	1 cut(s)	517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.