Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000681

Physical Location & Seq

Genomic Coordinates Forward (+)

85631277 .. 85633204

Gene Structure 1928 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53946

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGGTTTTCTGTTTAGCTTATTTGAGAGCCTACTTGTTAAGTTTTCTGTGATTGACATTAGTGGGAATAATTGGTTGTTTGCAGAATCTAGAGATAAAATTTTGAAGGATGATTGGGATGTCATCGCATATAGGGTACTGGCCTACCTTCTTCTTGGTGTTGTTCGGATATACTCCAAAAAAGTTGAATACCTTTTTGATGTCTGCCATGAGGTGCTAACTGAAATCAACAAGTTTGTCGTTAGCACAAAAGAGAAGGGAGACACAGATACGTTTCTTGCACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009987 GO:0016043 GO:0022402 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

95

Amino Acids

10.99

Weight (kDa)

5.01

Isoelectric Point (pI)

22.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad21_Rec8_N	PF04825	31 - 86	1.8e-10	N terminus of Rad21 / Rec8 like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840
fragaria_vesca	FvH4_6g53040 FvH4_6g53040 FvH4_6g53050 FvH4_6g53050
malus_domestica	MD09G1015100.v1.1 MD09G1015200.v1.1 MD17G1015200.v1.1
prunus_persica	Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1
pyrus_communis	pycom111g01230 pycom17g01230 pycom17g01240
rosa_chinensis	RchiOBHm_Chr2g0146031 RchiOBHm_Chr2g0172041 RchiOBHm_Chr2g0172061 RchiOBHm_Chr2g0172121 RchiOBHm_Chr2g0172131 RchiOBHm_Chr2g0172161 RchiOBHm_Chr2g0173841 RchiOBHm_Chr2g0174821 RchiOBHm_Chr2g0174831
rosa_laevigata	RLG00000022078 RLG00000022079 RLG00000022228 RLG00000022298 RLG00000022299 RLG00000032768
rosa_multiflora	Rmu_co8137076.1_g000001 Rmu_sc0001716.1_g000038 Rmu_sc0003188.1_g000021 Rmu_sc0015734.1_g000001 Rmu_sc0038259.1_g000001 Rmu_sc0038259.1_g000002 Rmu_sc0040737.1_g000001 Rmu_sc0041600.1_g000001 Rmu_ssc0000252.1_g000045
rosa_roxburghii	Rroxscaffold_2G00077660 Rroxscaffold_2G00080120 Rroxscaffold_2G00080130 Rroxscaffold_2G00080290
rosa_rugosa	Rorug02G0579500 Rorug02G0579600
rosa_samantha	Rh2AG632100 Rh2AG632200 Rh2AG656700 Rh2AG656800 Rh2AG660800 Rh2AG660900 Rh2BG645600 Rh2BG645700 Rh2BG667700 Rh2BG667800 Rh2BG672200 Rh2BG672300 Rh2CG627800 Rh2CG627900 Rh2CG635000 Rh2CG635100 Rh2DG658600 Rh2DG678300 Rh2DG685300 Rh2DG685400 Rh6AG066100 Rh6BG058900
rosa_wichuraiana	Rw2G053570 Rw2G054150 Rw2G054160 Rw6G005810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	99
AfaI	GTAC	1 cut(s)	138
AgsI	TTSAA	2 cut(s)	106, 188
AluBI	AGCT	1 cut(s)	18
AluI	AGCT	1 cut(s)	18
Alw26I	GTCTC	1 cut(s)	255
AoxI	GGCC	1 cut(s)	141
ApoI	RAATTY	1 cut(s)	99
BcoDI	GTCTC	1 cut(s)	255
BfaI	CTAG	1 cut(s)	90
Bse1I	ACTGG	1 cut(s)	144
BseGI	GGATG	2 cut(s)	115, 124
BseNI	ACTGG	1 cut(s)	144
BshFI	GGCC	1 cut(s)	143
BsmAI	GTCTC	1 cut(s)	255
BsnI	GGCC	1 cut(s)	143
BspANI	GGCC	1 cut(s)	143
BsrI	ACTGG	1 cut(s)	144
BstDEI	CTNAG	1 cut(s)	285
BstF5I	GGATG	2 cut(s)	115, 124
BstMAI	GTCTC	1 cut(s)	255
BsuRI	GGCC	1 cut(s)	143
BtgZI	GCGATG	1 cut(s)	109
BtsCI	GGATG	2 cut(s)	115, 124
Csp6I	GTAC	1 cut(s)	137
CviAII	CATG	1 cut(s)	209
CviJI	RGCY	3 cut(s)	18, 30, 143
CviKI_1	RGCY	3 cut(s)	18, 30, 143
CviQI	GTAC	1 cut(s)	137
DdeI	CTNAG	1 cut(s)	285
FaeI	CATG	1 cut(s)	212
FaiI	YATR	4 cut(s)	130, 132, 172, 210
FatI	CATG	1 cut(s)	208
FokI	GGATG	2 cut(s)	122, 131
FspBI	CTAG	1 cut(s)	90
HaeIII	GGCC	1 cut(s)	143
Hin1II	CATG	1 cut(s)	212
HinfI	GANTC	1 cut(s)	86
Hpy188I	TCNGA	1 cut(s)	168
Hpy188III	TCNNGA	1 cut(s)	90
HpyAV	CCTTC	3 cut(s)	100, 158, 250
HpyCH4IV	ACGT	1 cut(s)	272
HpyCH4V	TGCA	2 cut(s)	83, 281
HpyF3I	CTNAG	1 cut(s)	285
HpySE526I	ACGT	1 cut(s)	272
Hsp92II	CATG	1 cut(s)	212
LpnPI	CCDG	1 cut(s)	125
MaeI	CTAG	1 cut(s)	90
MaeII	ACGT	1 cut(s)	272
MboII	GAAGA	1 cut(s)	143
MluCI	AATT	2 cut(s)	70, 99
MnlI	CCTC	1 cut(s)	205
MseI	TTAA	1 cut(s)	39
NlaIII	CATG	1 cut(s)	212
PfeI	GAWTC	1 cut(s)	86
RsaI	GTAC	1 cut(s)	138
RsaNI	GTAC	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	39
SetI	ASST	6 cut(s)	20, 150, 195, 216, 275, 286
SgeI	CNNG	6 cut(s)	47, 102, 152, 167, 221, 244
Sse9I	AATT	2 cut(s)	70, 99
SspMI	CTAG	1 cut(s)	90
TaiI	ACGT	1 cut(s)	275
TasI	AATT	2 cut(s)	70, 99
TfiI	GAWTC	1 cut(s)	86
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
XapI	RAATTY	1 cut(s)	99
XbaI	TCTAGA	1 cut(s)	89
XspI	CTAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.