RLG00000022078

Sister chromatid cohesion 1 protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
80722627 .. 80725461
2835 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022078

Sequence Viewer

Length: 1542 bp
ATGCACCTGCAGAAATGCTGTGTGCCGCTTATCACTCTATTACCATACCGGAAAGGTTTGAACTTGATGCTTTTGATATGGGGAGCCTTGAAGATCGATGTCAGTGGTGAACATTTGGTGCCTCACAAAGAAATCATGCTTAAAGTTTGTGCACAGTGGAATGGAATAGAACGACTTTCATCAGAAATGTATGATCATGTGGAATTTGGTGCCTGCCACAGTATTTTCTCAACTTATTACTTCCCAGTCAAAAGTATACTTTCATCTCACCTGATGGACTTGTGTATGGAGTTAATAACATCAAGTAATGGAGCTGACTCGAAAGAAATCATAGAGCAGCTTCAATGGAATAGATTCTCTCAAGAAGAATGTGCTGACATTGATACATCTATTGGCATTGAGAAAGGACCTCAAAACCAAGTTAAGCAATATGATGAAGATAATGAAACCACTGGAGAGCAGATACAGACTCCAGATATACCACTGCCTGAAGATGGAATTCAGGAAGAAGAGGAGACAATGGAAATAGACTCGGTGCAACCAGAAAGTCAGAGTTTTCAGATTACAAGAGAAGAGCATAGTCTAGGAAACTTAGAAGCTGACATGGAGAATCTGAAAAATGTTACATTTTCTCAAGAAGAATCCCTGGGCCTTGATGTGCTTTGTGGAGCCAAGAAACCTCAAGAACTTTTTTGTTCATATGGAGAAGAGAATCATAACGATGAAGAGCCGACTAAGTTACAGGACATGATTGCACCAGATACCATAAAAAGTATTCTGGAAGAAGATCCAGATCCCCTCTCAGTTGCATATGATGGCAGTCCTGATGCCAAGCAGCCATATACTCTAGGTGCTACTACACCAAAATTGACATCTGTTCCCAGACCAGCTTCCAAGAAGTCGGCTCGGATTTCTAGGAAAAGAAACTGTGTCTTCTATGATATAGTAGTGCTGCCTAATGAGGCAATCAGGCAAAGTATACATGATGCTAGTGACTTGGTTGCTAAAAAGAAGGGAGTTCCCAAAAATGCCCATGCTGTTTGGAAAACTAATCGAATTGGAAATCTTGCACATAATTTCTTGGAGCAATTGATATCTAACGTTTTGCAAGAGCATGATTCTATAAGGTTCCTCTTATGCAAAAGGAAATTAAGGAAATTAAAGAGTACTCCCGAGAAGTTAGATTTGTTGGCCTGTAGGAGGACTGGTATATCAGAGCAAATGGAGGTTGTAAATACGGAAACTGTTGAACCTACAGAAGACTTAGATGTGTTGGAATATCCATGTACTGTTGGATTAGAACAAGCAGAAATTGCACCAGACACATCTGTTCTTCGCTCAAAATCAATCAAATCATTTCATAGTCCAAGGAGTCCTGAAGTTGCTGATCTGGATGTAGTAAGACCTGAGACATCTGGAAGGATAGAAAAAAAACCGTCTATGGGAGCAGAGTCGAAGCTGAATTTTGCGAAGGAGTTAATCCTGAACTCGAAAGGTGGGGAGGTACTTGCACAGGCACTTTACAGTTTGCAACAGTTGTAG

Protein Analysis

514

Amino Acids

57.56

Weight (kDa)

4.97

Isoelectric Point (pI)

55.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 15
Acc36I ACCTGC 1 cut(s) 15
AccB1I GGYRCC 2 cut(s) 118, 209
AccI GTMKAC 2 cut(s) 256, 979
AciI CCGC 1 cut(s) 26
AclI AACGTT 1 cut(s) 1101
AclWI GGATC 2 cut(s) 782, 788
AcsI RAATTY 3 cut(s) 203, 498, 1462
AcuI CTGAAG 2 cut(s) 510, 1398
AfaI GTAC 3 cut(s) 1168, 1288, 1506
AfiI CCNNNNNNNGG 3 cut(s) 494, 1200, 1442
AgsI TTSAA 4 cut(s) 61, 91, 344, 1250
AjnI CCWGG 1 cut(s) 645
AluBI AGCT 5 cut(s) 314, 340, 599, 890, 1459
AluI AGCT 5 cut(s) 314, 340, 599, 890, 1459
Alw21I GWGCWC 1 cut(s) 154
Alw26I GTCTC 2 cut(s) 509, 1403
Alw44I GTGCAC 1 cut(s) 150
AlwI GGATC 2 cut(s) 782, 788
Ama87I CYCGRG 1 cut(s) 1172
AoxI GGCC 2 cut(s) 649, 1191
ApaLI GTGCAC 1 cut(s) 150
ApeKI GCWGC 3 cut(s) 337, 835, 952
ApoI RAATTY 3 cut(s) 203, 498, 1462
Asp700I GAANNNNTTC 1 cut(s) 353
AspS9I GGNCC 2 cut(s) 407, 649
AsuHPI GGTGA 2 cut(s) 119, 260
AvaI CYCGRG 1 cut(s) 1172
AvaII GGWCC 1 cut(s) 407
BaeGI GKGCMC 1 cut(s) 154
BanI GGYRCC 2 cut(s) 118, 209
BbsI GAAGAC 2 cut(s) 925, 1266
Bbv12I GWGCWC 1 cut(s) 154
BbvI GCAGC 3 cut(s) 349, 847, 939
BccI CCATC 3 cut(s) 268, 488, 809
BciT130I CCWGG 1 cut(s) 647
BclI TGATCA 1 cut(s) 193
BcoDI GTCTC 2 cut(s) 509, 1403
BfaI CTAG 4 cut(s) 584, 848, 915, 990
BfmI CTRYAG 3 cut(s) 8, 1195, 1254
BfuAI ACCTGC 1 cut(s) 15
BisI GCNGC 4 cut(s) 26, 338, 836, 953
BlsI GCNGC 4 cut(s) 27, 339, 837, 954
BmcAI AGTACT 1 cut(s) 1168
Bme1390I CCNGG 1 cut(s) 647
Bme18I GGWCC 1 cut(s) 407
BmeT110I CYCGRG 1 cut(s) 1172
BmgT120I GGNCC 2 cut(s) 407, 649
BmiI GGNNCC 5 cut(s) 85, 120, 211, 670, 1130
BmrFI CCNGG 1 cut(s) 647
BmrI ACTGGG 1 cut(s) 239
BmsI GCATC 3 cut(s) 57, 817, 976
BmuI ACTGGG 1 cut(s) 239
BpiI GAAGAC 2 cut(s) 925, 1266
BpmI CTGGAG 2 cut(s) 456, 474
BpuEI CTTGAG 3 cut(s) 345, 618, 666
Bsa29I ATCGAT 1 cut(s) 96
BsaBI GATNNNNATC 1 cut(s) 792
BsaJI CCNNGG 3 cut(s) 645, 646, 1367
BsaWI WCCGGW 1 cut(s) 48
BsaXI ACNNNNNCTCC 2 cut(s) 1192, 1222
Bsc4I CCNNNNNNNGG 3 cut(s) 494, 1200, 1442
Bse1I ACTGG 3 cut(s) 245, 457, 1210
Bse8I GATNNNNATC 1 cut(s) 792
BseBI CCWGG 1 cut(s) 647
BseCI ATCGAT 1 cut(s) 96
BseDI CCNNGG 3 cut(s) 645, 646, 1367
BseGI GGATG 1 cut(s) 1399
BseJI GATNNNNATC 1 cut(s) 792
BseLI CCNNNNNNNGG 3 cut(s) 494, 1200, 1442
BseMII CTCAG 2 cut(s) 816, 1398
BseNI ACTGG 3 cut(s) 245, 457, 1210
BseRI GAGGAG 1 cut(s) 527
BseSI GKGCMC 1 cut(s) 154
BseXI GCAGC 3 cut(s) 349, 847, 939
BshFI GGCC 2 cut(s) 651, 1193
BshNI GGYRCC 2 cut(s) 118, 209
BshVI ATCGAT 1 cut(s) 96
BsiHKAI GWGCWC 1 cut(s) 154
BsiHKCI CYCGRG 1 cut(s) 1172
BsiSI CCGG 1 cut(s) 49
BslI CCNNNNNNNGG 3 cut(s) 494, 1200, 1442
BsmAI GTCTC 2 cut(s) 509, 1403
BsnI GGCC 2 cut(s) 651, 1193
BsoBI CYCGRG 1 cut(s) 1172
Bsp1286I GDGCHC 1 cut(s) 154
Bsp143I GATC 5 cut(s) 93, 193, 787, 793, 1387
BspACI CCGC 1 cut(s) 26
BspANI GGCC 2 cut(s) 651, 1193
BspCNI CTCAG 2 cut(s) 815, 1399
BspDI ATCGAT 1 cut(s) 96
BspLI GGNNCC 5 cut(s) 85, 120, 211, 670, 1130
BspMAI CTGCAG 1 cut(s) 12
BspMI ACCTGC 1 cut(s) 15
BspPI GGATC 2 cut(s) 782, 788
BspQI GCTCTTC 2 cut(s) 567, 720
BspT107I GGYRCC 2 cut(s) 118, 209
BsrI ACTGG 3 cut(s) 245, 457, 1210
BssECI CCNNGG 3 cut(s) 645, 646, 1367
BssMI GATC 5 cut(s) 93, 193, 787, 793, 1387
BssNAI GTATAC 2 cut(s) 257, 980
BssT1I CCWWGG 1 cut(s) 1367
Bst1107I GTATAC 2 cut(s) 257, 980
Bst2UI CCWGG 1 cut(s) 647
Bst4CI ACNGT 8 cut(s) 156, 221, 929, 1246, 1291, 1437, 1526, 1536
Bst6I CTCTTC 4 cut(s) 504, 567, 702, 720
BstAPI GCANNNNNTGC 1 cut(s) 1313
BstC8I GCNNGC 1 cut(s) 214
BstDEI CTNAG 5 cut(s) 592, 735, 802, 1264, 1407
BstENI CCTNNNNNAGG 1 cut(s) 1198
BstF5I GGATG 1 cut(s) 1399
BstKTI GATC 5 cut(s) 96, 196, 790, 796, 1390
BstMAI GTCTC 2 cut(s) 509, 1403
BstMBI GATC 5 cut(s) 93, 193, 787, 793, 1387
BstMWI GCNNNNNNNGC 1 cut(s) 1313
BstNI CCWGG 1 cut(s) 647
BstSCI CCNGG 1 cut(s) 645
BstSFI CTRYAG 3 cut(s) 8, 1195, 1254
BstSLI GKGCMC 1 cut(s) 154
BstV1I GCAGC 3 cut(s) 349, 847, 939
BstV2I GAAGAC 2 cut(s) 925, 1266
BstX2I RGATCY 2 cut(s) 787, 793
BstYI RGATCY 2 cut(s) 787, 793
BstZ17I GTATAC 2 cut(s) 257, 980
Bsu15I ATCGAT 1 cut(s) 96
BsuRI GGCC 2 cut(s) 651, 1193
BsuTUI ATCGAT 1 cut(s) 96
BtsCI GGATG 1 cut(s) 1399
BtsI GCAGTG 1 cut(s) 482
BtsIMutI CAGTG 4 cut(s) 109, 161, 450, 482
BveI ACCTGC 1 cut(s) 15
Cac8I GCNNGC 1 cut(s) 214
Cfr13I GGNCC 2 cut(s) 407, 649
ClaI ATCGAT 1 cut(s) 96
Csp6I GTAC 3 cut(s) 1167, 1287, 1505
CviAII CATG 8 cut(s) 136, 197, 604, 748, 983, 1034, 1115, 1284
CviQI GTAC 3 cut(s) 1167, 1287, 1505
DdeI CTNAG 5 cut(s) 592, 735, 802, 1264, 1407
DpnI GATC 5 cut(s) 95, 195, 789, 795, 1389
DpnII GATC 5 cut(s) 93, 193, 787, 793, 1387
Eam1104I CTCTTC 4 cut(s) 504, 567, 702, 720
EarI CTCTTC 4 cut(s) 504, 567, 702, 720
Eco130I CCWWGG 1 cut(s) 1367
Eco32I GATATC 1 cut(s) 1095
Eco47I GGWCC 1 cut(s) 407
Eco57I CTGAAG 2 cut(s) 510, 1398
Eco88I CYCGRG 1 cut(s) 1172
EcoNI CCTNNNNNAGG 1 cut(s) 1198
EcoO109I RGGNCCY 1 cut(s) 407
EcoRI GAATTC 1 cut(s) 498
EcoRII CCWGG 1 cut(s) 645
EcoRV GATATC 1 cut(s) 1095
EcoT14I CCWWGG 1 cut(s) 1367
ErhI CCWWGG 1 cut(s) 1367
FaeI CATG 8 cut(s) 139, 200, 607, 751, 986, 1037, 1118, 1287
FatI CATG 8 cut(s) 135, 196, 603, 747, 982, 1033, 1114, 1283
FauNDI CATATG 2 cut(s) 700, 811
FbaI TGATCA 1 cut(s) 193
FblI GTMKAC 2 cut(s) 256, 979
Fnu4HI GCNGC 4 cut(s) 26, 338, 836, 953
FokI GGATG 1 cut(s) 1406
Fsp4HI GCNGC 4 cut(s) 26, 338, 836, 953
FspBI CTAG 4 cut(s) 584, 848, 915, 990
GluI GCNGC 4 cut(s) 26, 338, 836, 953
GsuI CTGGAG 2 cut(s) 456, 474
HaeIII GGCC 2 cut(s) 651, 1193
HapII CCGG 1 cut(s) 49
Hin1II CATG 8 cut(s) 139, 200, 607, 751, 986, 1037, 1118, 1287
HpaII CCGG 1 cut(s) 49
HphI GGTGA 2 cut(s) 119, 260
Hpy166II GTNNAC 4 cut(s) 110, 152, 257, 980
Hpy188I TCNGA 6 cut(s) 184, 552, 561, 615, 909, 1216
Hpy8I GTNNAC 4 cut(s) 110, 152, 257, 980
HpyAV CCTTC 3 cut(s) 1006, 1413, 1465
HpyCH4III ACNGT 8 cut(s) 156, 221, 929, 1246, 1291, 1437, 1526, 1536
HpyCH4IV ACGT 1 cut(s) 1101
HpyF10VI GCNNNNNNNGC 1 cut(s) 1313
HpyF3I CTNAG 5 cut(s) 592, 735, 802, 1264, 1407
HpySE526I ACGT 1 cut(s) 1101
Hsp92II CATG 8 cut(s) 139, 200, 607, 751, 986, 1037, 1118, 1287
Ksp22I TGATCA 1 cut(s) 193
Kzo9I GATC 5 cut(s) 93, 193, 787, 793, 1387
LguI GCTCTTC 2 cut(s) 567, 720
LmnI GCTCC 5 cut(s) 83, 311, 668, 1084, 1445
Lsp1109I GCAGC 3 cut(s) 349, 847, 939
LweI GCATC 3 cut(s) 57, 817, 976
MaeI CTAG 4 cut(s) 584, 848, 915, 990
MaeII ACGT 1 cut(s) 1101
MaeIII GTNAC 3 cut(s) 622, 738, 992
MalI GATC 5 cut(s) 95, 195, 789, 795, 1389
MboI GATC 5 cut(s) 93, 193, 787, 793, 1387
MfeI CAATTG 1 cut(s) 1088
MflI RGATCY 2 cut(s) 787, 793
MhlI GDGCHC 1 cut(s) 154
MlyI GAGTC 5 cut(s) 311, 463, 524, 1381, 1460
MmeI TCCRAC 2 cut(s) 1254, 1273
MroXI GAANNNNTTC 1 cut(s) 353
MseI TTAA 6 cut(s) 141, 293, 423, 1151, 1160, 1478
MslI CAYNNNNRTG 1 cut(s) 720
MspI CCGG 1 cut(s) 49
MspR9I CCNGG 1 cut(s) 647
MunI CAATTG 1 cut(s) 1088
MvaI CCWGG 1 cut(s) 647
MwoI GCNNNNNNNGC 1 cut(s) 1313
NdeI CATATG 2 cut(s) 700, 811
NdeII GATC 5 cut(s) 93, 193, 787, 793, 1387
NlaIII CATG 8 cut(s) 139, 200, 607, 751, 986, 1037, 1118, 1287
NlaIV GGNNCC 5 cut(s) 85, 120, 211, 670, 1130
NmuCI GTSAC 1 cut(s) 992
PaqCI CACCTGC 1 cut(s) 15
PasI CCCWGGG 1 cut(s) 646
PciSI GCTCTTC 2 cut(s) 567, 720
PdmI GAANNNNTTC 1 cut(s) 353
PfeI GAWTC 5 cut(s) 354, 610, 641, 712, 1118
PkrI GCNGC 4 cut(s) 27, 339, 837, 954
PleI GAGTC 5 cut(s) 311, 463, 524, 1380, 1459
PpsI GAGTC 5 cut(s) 311, 463, 524, 1380, 1459
PpuMI RGGWCCY 1 cut(s) 407
Psp1406I AACGTT 1 cut(s) 1101
Psp5II RGGWCCY 1 cut(s) 407
Psp6I CCWGG 1 cut(s) 645
PspGI CCWGG 1 cut(s) 645
PspN4I GGNNCC 5 cut(s) 85, 120, 211, 670, 1130
PspPI GGNCC 2 cut(s) 407, 649
PspPPI RGGWCCY 1 cut(s) 407
PstI CTGCAG 1 cut(s) 12
PsuI RGATCY 2 cut(s) 787, 793
RsaI GTAC 3 cut(s) 1168, 1288, 1506
RsaNI GTAC 3 cut(s) 1167, 1287, 1505
RseI CAYNNNNRTG 1 cut(s) 720
SapI GCTCTTC 2 cut(s) 567, 720
SaqAI TTAA 6 cut(s) 141, 293, 423, 1151, 1160, 1478
SatI GCNGC 4 cut(s) 26, 338, 836, 953
Sau3AI GATC 5 cut(s) 93, 193, 787, 793, 1387
Sau96I GGNCC 2 cut(s) 407, 649
ScaI AGTACT 1 cut(s) 1168
SchI GAGTC 5 cut(s) 311, 463, 524, 1381, 1460
ScrFI CCNGG 1 cut(s) 647
SduI GDGCHC 1 cut(s) 154
SfaNI GCATC 3 cut(s) 57, 817, 976
SfcI CTRYAG 3 cut(s) 8, 1195, 1254
SinI GGWCC 1 cut(s) 407
SmiMI CAYNNNNRTG 1 cut(s) 720
SmlI CTYRAG 3 cut(s) 360, 633, 681
SmoI CTYRAG 3 cut(s) 360, 633, 681
SsiI CCGC 1 cut(s) 26
SspMI CTAG 4 cut(s) 584, 848, 915, 990
StyD4I CCNGG 1 cut(s) 645
StyI CCWWGG 1 cut(s) 1367
TaaI ACNGT 8 cut(s) 156, 221, 929, 1246, 1291, 1437, 1526, 1536
TaiI ACGT 1 cut(s) 1104
TaqI TCGA 5 cut(s) 96, 320, 1054, 1454, 1490
TatI WGTACW 2 cut(s) 1166, 1286
TauI GCSGC 1 cut(s) 28
TfiI GAWTC 5 cut(s) 354, 610, 641, 712, 1118
Tru1I TTAA 6 cut(s) 141, 293, 423, 1151, 1160, 1478
Tru9I TTAA 6 cut(s) 141, 293, 423, 1151, 1160, 1478
TscAI CASTG 4 cut(s) 109, 161, 457, 489
TseFI GTSAC 1 cut(s) 992
TseI GCWGC 3 cut(s) 337, 835, 952
Tsp45I GTSAC 1 cut(s) 992
TspDTI ATGAA 7 cut(s) 168, 252, 450, 459, 687, 738, 1349
TspGWI ACGGA 1 cut(s) 1253
TspRI CASTG 4 cut(s) 109, 161, 457, 489
VneI GTGCAC 1 cut(s) 150
VpaK11BI GGWCC 1 cut(s) 407
XagI CCTNNNNNAGG 1 cut(s) 1198
XapI RAATTY 3 cut(s) 203, 498, 1462
XmiI GTMKAC 2 cut(s) 256, 979
XmnI GAANNNNTTC 1 cut(s) 353
XspI CTAG 4 cut(s) 584, 848, 915, 990
ZrmI AGTACT 1 cut(s) 1168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.