Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8137076.1

Orthogroup ID

OG0000681

Physical Location & Seq

Genomic Coordinates Reverse (-)

119 .. 586

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8137076.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ctgaccatatcttcatcaggtgtttcagaggagcttaggtcgctcttccacaaaagcataatagaatctgctgaaactgttgaacctccagaaaagctagatgtgttagaacctccaagtactggtagaccagagcaagtagaaacttcaccagggccacctgtccttgagcaaatagaaattgagcctggaacccctatccttgagaaaatagaaattgcaccaggaacgcctgtccttcactcaacatcaatgaaatcattcaatagtccaaagagccccgaagctcctgatatggatatggtgatacctgagccatccggaaggatagaggaagagtcatctatgggaaatgaacaagcttacccatctgaaagtgtagaagtaccatctttggacaaggttcaagagcatgatttcaatttattgaatgaggtaagtactgattactttggagttcctctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009987 GO:0016043 GO:0022402 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

155

Amino Acids

16.86

Weight (kDa)

4.2

Isoelectric Point (pI)

84.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840
fragaria_vesca	FvH4_6g53040 FvH4_6g53040 FvH4_6g53050 FvH4_6g53050
malus_domestica	MD09G1015100.v1.1 MD09G1015200.v1.1 MD17G1015200.v1.1
prunus_persica	Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1
pyrus_communis	pycom111g01230 pycom17g01230 pycom17g01240
rosa_chinensis	RchiOBHm_Chr2g0146031 RchiOBHm_Chr2g0172041 RchiOBHm_Chr2g0172061 RchiOBHm_Chr2g0172121 RchiOBHm_Chr2g0172131 RchiOBHm_Chr2g0172161 RchiOBHm_Chr2g0173841 RchiOBHm_Chr2g0174821 RchiOBHm_Chr2g0174831
rosa_laevigata	RLG00000022078 RLG00000022079 RLG00000022228 RLG00000022298 RLG00000022299 RLG00000032768
rosa_multiflora	Rmu_co8137076.1_g000001 Rmu_sc0001716.1_g000038 Rmu_sc0003188.1_g000021 Rmu_sc0015734.1_g000001 Rmu_sc0038259.1_g000001 Rmu_sc0038259.1_g000002 Rmu_sc0040737.1_g000001 Rmu_sc0041600.1_g000001 Rmu_ssc0000252.1_g000045
rosa_roxburghii	Rroxscaffold_2G00077660 Rroxscaffold_2G00080120 Rroxscaffold_2G00080130 Rroxscaffold_2G00080290
rosa_rugosa	Rorug02G0579500 Rorug02G0579600
rosa_samantha	Rh2AG632100 Rh2AG632200 Rh2AG656700 Rh2AG656800 Rh2AG660800 Rh2AG660900 Rh2BG645600 Rh2BG645700 Rh2BG667700 Rh2BG667800 Rh2BG672200 Rh2BG672300 Rh2CG627800 Rh2CG627900 Rh2CG635000 Rh2CG635100 Rh2DG658600 Rh2DG678300 Rh2DG685300 Rh2DG685400 Rh6AG066100 Rh6BG058900
rosa_wichuraiana	Rw2G053570 Rw2G054150 Rw2G054160 Rw6G005810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	122
AccI	GTMKAC	1 cut(s)	127
AccIII	TCCGGA	1 cut(s)	320
AfaI	GTAC	3 cut(s)	121, 387, 442
AfiI	CCNNNNNNNGG	1 cut(s)	122
AgsI	TTSAA	5 cut(s)	83, 265, 407, 421, 430
AjnI	CCWGG	3 cut(s)	151, 187, 223
AluBI	AGCT	4 cut(s)	34, 97, 287, 362
AluI	AGCT	4 cut(s)	34, 97, 287, 362
Aor13HI	TCCGGA	1 cut(s)	320
AoxI	GGCC	1 cut(s)	155
Asp700I	GAANNNNTTC	1 cut(s)	260
AspS9I	GGNCC	1 cut(s)	155
AsuHPI	GGTGA	2 cut(s)	141, 316
BanII	GRGCYC	1 cut(s)	281
BccI	CCATC	3 cut(s)	325, 376, 397
BciT130I	CCWGG	3 cut(s)	153, 189, 225
BfaI	CTAG	1 cut(s)	98
BmcAI	AGTACT	2 cut(s)	121, 442
Bme1390I	CCNGG	3 cut(s)	153, 189, 225
BmgT120I	GGNCC	1 cut(s)	155
BmiI	GGNNCC	1 cut(s)	193
BmrFI	CCNGG	3 cut(s)	153, 189, 225
BpmI	CTGGAG	1 cut(s)	72
Bpu10I	CCTNAGC	2 cut(s)	35, 312
BpuEI	CTTGAG	2 cut(s)	188, 224
BsaJI	CCNNGG	1 cut(s)	152
BsaWI	WCCGGW	1 cut(s)	320
BsaXI	ACNNNNNCTCC	2 cut(s)	23, 53
Bsc4I	CCNNNNNNNGG	1 cut(s)	122
Bse1I	ACTGG	1 cut(s)	127
BseAI	TCCGGA	1 cut(s)	320
BseBI	CCWGG	3 cut(s)	153, 189, 225
BseDI	CCNNGG	1 cut(s)	152
BseGI	GGATG	1 cut(s)	317
BseLI	CCNNNNNNNGG	1 cut(s)	122
BseMII	CTCAG	1 cut(s)	303
BseNI	ACTGG	1 cut(s)	127
BseRI	GAGGAG	1 cut(s)	44
BshFI	GGCC	1 cut(s)	157
BsiSI	CCGG	1 cut(s)	321
BslI	CCNNNNNNNGG	1 cut(s)	122
BsnI	GGCC	1 cut(s)	157
Bsp1286I	GDGCHC	1 cut(s)	281
Bsp13I	TCCGGA	1 cut(s)	320
BspANI	GGCC	1 cut(s)	157
BspCNI	CTCAG	1 cut(s)	304
BspEI	TCCGGA	1 cut(s)	320
BspLI	GGNNCC	1 cut(s)	193
BspQI	GCTCTTC	1 cut(s)	50
BsrI	ACTGG	1 cut(s)	127
BssECI	CCNNGG	1 cut(s)	152
Bst2UI	CCWGG	3 cut(s)	153, 189, 225
Bst4CI	ACNGT	1 cut(s)	79
Bst6I	CTCTTC	2 cut(s)	50, 330
BstDEI	CTNAG	2 cut(s)	35, 312
BstF5I	GGATG	1 cut(s)	317
BstMWI	GCNNNNNNNGC	1 cut(s)	40
BstNI	CCWGG	3 cut(s)	153, 189, 225
BstSCI	CCNGG	3 cut(s)	151, 187, 223
BsuRI	GGCC	1 cut(s)	157
BtsCI	GGATG	1 cut(s)	317
Cfr13I	GGNCC	1 cut(s)	155
Csp6I	GTAC	3 cut(s)	120, 386, 441
CviAII	CATG	1 cut(s)	413
CviJI	RGCY	8 cut(s)	34, 97, 157, 187, 279, 287, 316, 362
CviKI_1	RGCY	8 cut(s)	34, 97, 157, 187, 279, 287, 316, 362
CviQI	GTAC	3 cut(s)	120, 386, 441
DdeI	CTNAG	2 cut(s)	35, 312
Eam1104I	CTCTTC	2 cut(s)	50, 330
EarI	CTCTTC	2 cut(s)	50, 330
Eco24I	GRGCYC	1 cut(s)	281
EcoRII	CCWGG	3 cut(s)	151, 187, 223
EcoT38I	GRGCYC	1 cut(s)	281
FaeI	CATG	1 cut(s)	416
FaiI	YATR	6 cut(s)	8, 59, 296, 302, 347, 414
FatI	CATG	1 cut(s)	412
FblI	GTMKAC	1 cut(s)	127
FokI	GGATG	1 cut(s)	304
FriOI	GRGCYC	1 cut(s)	281
FspBI	CTAG	1 cut(s)	98
GsuI	CTGGAG	1 cut(s)	72
HaeIII	GGCC	1 cut(s)	157
HapII	CCGG	1 cut(s)	321
Hin1II	CATG	1 cut(s)	416
HindIII	AAGCTT	1 cut(s)	360
HinfI	GANTC	2 cut(s)	65, 338
HpaII	CCGG	1 cut(s)	321
HphI	GGTGA	2 cut(s)	141, 316
Hpy166II	GTNNAC	1 cut(s)	128
Hpy188I	TCNGA	2 cut(s)	28, 373
Hpy188III	TCNNGA	4 cut(s)	89, 290, 321, 407
Hpy8I	GTNNAC	1 cut(s)	128
HpyAV	CCTTC	2 cut(s)	248, 318
HpyCH4III	ACNGT	1 cut(s)	79
HpyCH4V	TGCA	1 cut(s)	221
HpyF10VI	GCNNNNNNNGC	1 cut(s)	40
HpyF3I	CTNAG	2 cut(s)	35, 312
Hsp92II	CATG	1 cut(s)	416
Kpn2I	TCCGGA	1 cut(s)	320
LguI	GCTCTTC	1 cut(s)	50
LmnI	GCTCC	2 cut(s)	31, 292
MaeI	CTAG	1 cut(s)	98
MboII	GAAGA	3 cut(s)	3, 37, 347
MhlI	GDGCHC	1 cut(s)	281
MluCI	AATT	3 cut(s)	180, 216, 421
MlyI	GAGTC	1 cut(s)	347
MnlI	CCTC	5 cut(s)	22, 96, 123, 325, 427
MroI	TCCGGA	1 cut(s)	320
MroXI	GAANNNNTTC	1 cut(s)	260
MspI	CCGG	1 cut(s)	321
MspR9I	CCNGG	3 cut(s)	153, 189, 225
MvaI	CCWGG	3 cut(s)	153, 189, 225
MwoI	GCNNNNNNNGC	1 cut(s)	40
NlaIII	CATG	1 cut(s)	416
NlaIV	GGNNCC	1 cut(s)	193
PciSI	GCTCTTC	1 cut(s)	50
PdmI	GAANNNNTTC	1 cut(s)	260
PfeI	GAWTC	1 cut(s)	65
PflMI	CCANNNNNTGG	1 cut(s)	122
PleI	GAGTC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	346
Psp6I	CCWGG	3 cut(s)	151, 187, 223
PspGI	CCWGG	3 cut(s)	151, 187, 223
PspN4I	GGNNCC	1 cut(s)	193
PspPI	GGNCC	1 cut(s)	155
RsaI	GTAC	3 cut(s)	121, 387, 442
RsaNI	GTAC	3 cut(s)	120, 386, 441
SapI	GCTCTTC	1 cut(s)	50
Sau96I	GGNCC	1 cut(s)	155
ScaI	AGTACT	2 cut(s)	121, 442
SchI	GAGTC	1 cut(s)	347
ScrFI	CCNGG	3 cut(s)	153, 189, 225
SduI	GDGCHC	1 cut(s)	281
SmlI	CTYRAG	2 cut(s)	167, 203
SmoI	CTYRAG	2 cut(s)	167, 203
Sse9I	AATT	3 cut(s)	180, 216, 421
SspMI	CTAG	1 cut(s)	98
StyD4I	CCNGG	3 cut(s)	151, 187, 223
TaaI	ACNGT	1 cut(s)	79
TasI	AATT	3 cut(s)	180, 216, 421
TatI	WGTACW	2 cut(s)	119, 440
TfiI	GAWTC	1 cut(s)	65
TspDTI	ATGAA	2 cut(s)	269, 369
Van91I	CCANNNNNTGG	1 cut(s)	122
XmiI	GTMKAC	1 cut(s)	127
XmnI	GAANNNNTTC	1 cut(s)	260
XspI	CTAG	1 cut(s)	98
ZrmI	AGTACT	2 cut(s)	121, 442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.