Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000681

Physical Location & Seq

Genomic Coordinates Forward (+)

86683510 .. 86684064

Gene Structure 555 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54103

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGAAAAGTGTTCTGGAAGAACATCCAGATCCCCTCTCAGTTGCATATTATGGCAGTCCTGATGCCAAGCAGCCAGATGCTATAGGTGTTACTACAATAAAATTGACGGCTGTTCCCAGACCAGCTTCCAAGAAGTTGGCTTGGATTTCTAGTAAAAGAAAGTGTGTCTTTGATTTAGTAGTGCTGCCTAATAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009987 GO:0016043 GO:0022402 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

65

Amino Acids

7.11

Weight (kDa)

9.46

Isoelectric Point (pI)

41.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840
fragaria_vesca	FvH4_6g53040 FvH4_6g53040 FvH4_6g53050 FvH4_6g53050
malus_domestica	MD09G1015100.v1.1 MD09G1015200.v1.1 MD17G1015200.v1.1
prunus_persica	Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1
pyrus_communis	pycom111g01230 pycom17g01230 pycom17g01240
rosa_chinensis	RchiOBHm_Chr2g0146031 RchiOBHm_Chr2g0172041 RchiOBHm_Chr2g0172061 RchiOBHm_Chr2g0172121 RchiOBHm_Chr2g0172131 RchiOBHm_Chr2g0172161 RchiOBHm_Chr2g0173841 RchiOBHm_Chr2g0174821 RchiOBHm_Chr2g0174831
rosa_laevigata	RLG00000022078 RLG00000022079 RLG00000022228 RLG00000022298 RLG00000022299 RLG00000032768
rosa_multiflora	Rmu_co8137076.1_g000001 Rmu_sc0001716.1_g000038 Rmu_sc0003188.1_g000021 Rmu_sc0015734.1_g000001 Rmu_sc0038259.1_g000001 Rmu_sc0038259.1_g000002 Rmu_sc0040737.1_g000001 Rmu_sc0041600.1_g000001 Rmu_ssc0000252.1_g000045
rosa_roxburghii	Rroxscaffold_2G00077660 Rroxscaffold_2G00080120 Rroxscaffold_2G00080130 Rroxscaffold_2G00080290
rosa_rugosa	Rorug02G0579500 Rorug02G0579600
rosa_samantha	Rh2AG632100 Rh2AG632200 Rh2AG656700 Rh2AG656800 Rh2AG660800 Rh2AG660900 Rh2BG645600 Rh2BG645700 Rh2BG667700 Rh2BG667800 Rh2BG672200 Rh2BG672300 Rh2CG627800 Rh2CG627900 Rh2CG635000 Rh2CG635100 Rh2DG658600 Rh2DG678300 Rh2DG685300 Rh2DG685400 Rh6AG066100 Rh6BG058900
rosa_wichuraiana	Rw2G053570 Rw2G054150 Rw2G054160 Rw6G005810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	23
AluBI	AGCT	1 cut(s)	125
AluI	AGCT	1 cut(s)	125
AlwI	GGATC	1 cut(s)	23
ApeKI	GCWGC	2 cut(s)	70, 184
BbvI	GCAGC	2 cut(s)	82, 171
BceAI	ACGGC	1 cut(s)	123
BfaI	CTAG	1 cut(s)	150
BfmI	CTRYAG	1 cut(s)	81
BisI	GCNGC	2 cut(s)	71, 185
BlsI	GCNGC	2 cut(s)	72, 186
BmsI	GCATC	2 cut(s)	52, 67
BseGI	GGATG	1 cut(s)	22
BseMII	CTCAG	1 cut(s)	51
BseXI	GCAGC	2 cut(s)	82, 171
Bsp143I	GATC	1 cut(s)	28
BspCNI	CTCAG	1 cut(s)	50
BspPI	GGATC	1 cut(s)	23
BssMI	GATC	1 cut(s)	28
BstDEI	CTNAG	1 cut(s)	37
BstF5I	GGATG	1 cut(s)	22
BstKTI	GATC	1 cut(s)	31
BstMBI	GATC	1 cut(s)	28
BstSFI	CTRYAG	1 cut(s)	81
BstV1I	GCAGC	2 cut(s)	82, 171
BstX2I	RGATCY	1 cut(s)	28
BstXI	CCANNNNNNTGG	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	22
CviJI	RGCY	4 cut(s)	73, 110, 125, 140
CviKI_1	RGCY	4 cut(s)	73, 110, 125, 140
DdeI	CTNAG	1 cut(s)	37
DpnI	GATC	1 cut(s)	30
DpnII	GATC	1 cut(s)	28
FaiI	YATR	3 cut(s)	46, 51, 83
FalI	AAGNNNNNCTT	2 cut(s)	152, 184
Fnu4HI	GCNGC	2 cut(s)	71, 185
FokI	GGATG	1 cut(s)	9
Fsp4HI	GCNGC	2 cut(s)	71, 185
FspBI	CTAG	1 cut(s)	150
GluI	GCNGC	2 cut(s)	71, 185
Hpy188III	TCNNGA	3 cut(s)	14, 26, 59
HpyCH4V	TGCA	1 cut(s)	44
HpyF3I	CTNAG	1 cut(s)	37
Kzo9I	GATC	1 cut(s)	28
LpnPI	CCDG	5 cut(s)	39, 72, 87, 130, 135
Lsp1109I	GCAGC	2 cut(s)	82, 171
LweI	GCATC	2 cut(s)	52, 67
MaeI	CTAG	1 cut(s)	150
MaeIII	GTNAC	1 cut(s)	88
MalI	GATC	1 cut(s)	30
MboI	GATC	1 cut(s)	28
MboII	GAAGA	1 cut(s)	29
MflI	RGATCY	1 cut(s)	28
MluCI	AATT	1 cut(s)	101
MnlI	CCTC	1 cut(s)	44
NdeII	GATC	1 cut(s)	28
PkrI	GCNGC	2 cut(s)	72, 186
PsuI	RGATCY	1 cut(s)	28
SatI	GCNGC	2 cut(s)	71, 185
Sau3AI	GATC	1 cut(s)	28
SetI	ASST	2 cut(s)	88, 127
SfaNI	GCATC	2 cut(s)	52, 67
SfcI	CTRYAG	1 cut(s)	81
Sse9I	AATT	1 cut(s)	101
SspMI	CTAG	1 cut(s)	150
TasI	AATT	1 cut(s)	101
TseI	GCWGC	2 cut(s)	70, 184
TspDTI	ATGAA	1 cut(s)	17
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.