Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000681

Physical Location & Seq

Genomic Coordinates Reverse (-)

87312165 .. 87314047

Gene Structure 1883 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG656800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGTCTACTCACAGAGCTTGTTAGCAAGAAGAGGGCCTTTGAGTGCTATATGGGTCGCTGCTTATTGTTTCAAGAAGCTCAAGAAGACCCAGATCACAGAGACTGACATTTTGGCCGCTATTGATTGGTTTAGTGTAACAACAAAGTACATTTATTTGGAGACCTTGTTTCTGTGTTTGGCATTAGCTAATGCTGTCCACTGTTTAGCTGTGTTTCTTAGTTGCTCTGTAATTGAGACTTTTGCTATTATGAGAGTACTAGCCTACCTGCTTCTGGGTGTTATTCGAATATACTCGAGAAAAGTTGAATATCTTTTTGATGACTGCAATGAAGTGCTACTTGACATCAAGAAATTTGTGTTTAGCACAAAAGACAATGCACCTGCAGAAATGCTCTGTGCTGCTTATCACTCTGTTATCATACCGCATAGGTTTGAACTTGATGCTTTTGATATGGGGAGCCTTGAAGATGCCGGTGGTGAACATTTGGCATCTCACAAAGAAATCACGCTTAAAGGCATTAAATTTGTGGTCCTCGATGTTTCATTACTTTATTTTAGTTTGTACAATTTCAGCATGATATGGAACAGAATGTGCAGAGTGGATTGGAATAGGACTACTTCATCAGAAATGTATGATCATGTGGAATTTGGTGCCTGCGACAGTATTTTCTCAACTTATTACGCCCCATGTACTTTCATCTCACCTGATGGACTTTGGTATGGAGTTAATAACATCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009987 GO:0016043 GO:0022402 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

247

Amino Acids

28.22

Weight (kDa)

5.53

Isoelectric Point (pI)

38.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad21_Rec8_N	PF04825	1 - 124	7.3e-20	N terminus of Rad21 / Rec8 like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840
fragaria_vesca	FvH4_6g53040 FvH4_6g53040 FvH4_6g53050 FvH4_6g53050
malus_domestica	MD09G1015100.v1.1 MD09G1015200.v1.1 MD17G1015200.v1.1
prunus_persica	Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1
pyrus_communis	pycom111g01230 pycom17g01230 pycom17g01240
rosa_chinensis	RchiOBHm_Chr2g0146031 RchiOBHm_Chr2g0172041 RchiOBHm_Chr2g0172061 RchiOBHm_Chr2g0172121 RchiOBHm_Chr2g0172131 RchiOBHm_Chr2g0172161 RchiOBHm_Chr2g0173841 RchiOBHm_Chr2g0174821 RchiOBHm_Chr2g0174831
rosa_laevigata	RLG00000022078 RLG00000022079 RLG00000022228 RLG00000022298 RLG00000022299 RLG00000032768
rosa_multiflora	Rmu_co8137076.1_g000001 Rmu_sc0001716.1_g000038 Rmu_sc0003188.1_g000021 Rmu_sc0015734.1_g000001 Rmu_sc0038259.1_g000001 Rmu_sc0038259.1_g000002 Rmu_sc0040737.1_g000001 Rmu_sc0041600.1_g000001 Rmu_ssc0000252.1_g000045
rosa_roxburghii	Rroxscaffold_2G00077660 Rroxscaffold_2G00080120 Rroxscaffold_2G00080130 Rroxscaffold_2G00080290
rosa_rugosa	Rorug02G0579500 Rorug02G0579600
rosa_samantha	Rh2AG632100 Rh2AG632200 Rh2AG656700 Rh2AG656800 Rh2AG660800 Rh2AG660900 Rh2BG645600 Rh2BG645700 Rh2BG667700 Rh2BG667800 Rh2BG672200 Rh2BG672300 Rh2CG627800 Rh2CG627900 Rh2CG635000 Rh2CG635100 Rh2DG658600 Rh2DG678300 Rh2DG685300 Rh2DG685400 Rh6AG066100 Rh6BG058900
rosa_wichuraiana	Rw2G053570 Rw2G054150 Rw2G054160 Rw6G005810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	391
Acc36I	ACCTGC	2 cut(s)	276, 391
AccB1I	GGYRCC	1 cut(s)	653
AccI	GTMKAC	1 cut(s)	6
AciI	CCGC	2 cut(s)	117, 425
AcoI	YGGCCR	1 cut(s)	114
AcsI	RAATTY	3 cut(s)	353, 524, 647
AfaI	GTAC	4 cut(s)	149, 258, 566, 694
AfiI	CCNNNNNNNGG	1 cut(s)	274
AgsI	TTSAA	4 cut(s)	73, 308, 437, 467
AluBI	AGCT	4 cut(s)	18, 79, 188, 209
AluI	AGCT	4 cut(s)	18, 79, 188, 209
Alw26I	GTCTC	3 cut(s)	95, 155, 230
AlwNI	CAGNNNCTG	1 cut(s)	104
Ama87I	CYCGRG	1 cut(s)	295
AoxI	GGCC	2 cut(s)	35, 114
ApeKI	GCWGC	2 cut(s)	59, 401
ApoI	RAATTY	3 cut(s)	353, 524, 647
ArsI	GACNNNNNNTTYG	2 cut(s)	94, 126
AspS9I	GGNCC	2 cut(s)	35, 532
AsuHPI	GGTGA	2 cut(s)	491, 696
AsuII	TTCGAA	1 cut(s)	286
AvaI	CYCGRG	1 cut(s)	295
AvaII	GGWCC	1 cut(s)	532
BanI	GGYRCC	1 cut(s)	653
BbsI	GAAGAC	1 cut(s)	92
BbvI	GCAGC	2 cut(s)	46, 388
BccI	CCATC	1 cut(s)	704
BclI	TGATCA	1 cut(s)	637
BcoDI	GTCTC	3 cut(s)	95, 155, 230
BfaI	CTAG	1 cut(s)	260
BfmI	CTRYAG	1 cut(s)	384
BfuAI	ACCTGC	2 cut(s)	276, 391
BisI	GCNGC	3 cut(s)	60, 117, 402
BlsI	GCNGC	3 cut(s)	61, 118, 403
BmcAI	AGTACT	1 cut(s)	258
Bme18I	GGWCC	1 cut(s)	532
BmeT110I	CYCGRG	1 cut(s)	295
BmgT120I	GGNCC	2 cut(s)	35, 532
BmiI	GGNNCC	2 cut(s)	461, 655
BmsI	GCATC	3 cut(s)	433, 460, 500
BpiI	GAAGAC	1 cut(s)	92
Bpu14I	TTCGAA	1 cut(s)	286
BpuEI	CTTGAG	1 cut(s)	65
BsaI	GGTCTC	1 cut(s)	155
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	1 cut(s)	274
Bse118I	RCCGGY	1 cut(s)	473
Bse3DI	GCAATG	1 cut(s)	334
BseLI	CCNNNNNNNGG	1 cut(s)	274
BseMI	GCAATG	1 cut(s)	334
BseXI	GCAGC	2 cut(s)	46, 388
BsgI	GTGCAG	1 cut(s)	616
BshFI	GGCC	2 cut(s)	37, 116
BshNI	GGYRCC	1 cut(s)	653
BsiHKCI	CYCGRG	1 cut(s)	295
BsiSI	CCGG	1 cut(s)	474
BslI	CCNNNNNNNGG	1 cut(s)	274
BsmAI	GTCTC	3 cut(s)	95, 155, 230
BsnI	GGCC	2 cut(s)	37, 116
Bso31I	GGTCTC	1 cut(s)	155
BsoBI	CYCGRG	1 cut(s)	295
Bsp119I	TTCGAA	1 cut(s)	286
Bsp1407I	TGTACA	1 cut(s)	564
Bsp143I	GATC	2 cut(s)	93, 637
BspACI	CCGC	2 cut(s)	117, 425
BspANI	GGCC	2 cut(s)	37, 116
BspLI	GGNNCC	2 cut(s)	461, 655
BspMAI	CTGCAG	1 cut(s)	388
BspMI	ACCTGC	2 cut(s)	276, 391
BspT104I	TTCGAA	1 cut(s)	286
BspT107I	GGYRCC	1 cut(s)	653
BspTNI	GGTCTC	1 cut(s)	155
BsrDI	GCAATG	1 cut(s)	334
BsrFI	RCCGGY	1 cut(s)	473
BsrGI	TGTACA	1 cut(s)	564
BssAI	RCCGGY	1 cut(s)	473
BssMI	GATC	2 cut(s)	93, 637
Bst4CI	ACNGT	2 cut(s)	203, 665
Bst6I	CTCTTC	1 cut(s)	25
BstAUI	TGTACA	1 cut(s)	564
BstBI	TTCGAA	1 cut(s)	286
BstC8I	GCNNGC	1 cut(s)	658
BstDEI	CTNAG	1 cut(s)	218
BstKTI	GATC	2 cut(s)	96, 640
BstMAI	GTCTC	3 cut(s)	95, 155, 230
BstMBI	GATC	2 cut(s)	93, 637
BstSFI	CTRYAG	1 cut(s)	384
BstV1I	GCAGC	2 cut(s)	46, 388
BstV2I	GAAGAC	1 cut(s)	92
BsuRI	GGCC	2 cut(s)	37, 116
BtsIMutI	CAGTG	1 cut(s)	199
BveI	ACCTGC	2 cut(s)	276, 391
Cac8I	GCNNGC	1 cut(s)	658
CaiI	CAGNNNCTG	1 cut(s)	104
Cfr10I	RCCGGY	1 cut(s)	473
Cfr13I	GGNCC	2 cut(s)	35, 532
Csp6I	GTAC	4 cut(s)	148, 257, 565, 693
CviAII	CATG	3 cut(s)	577, 641, 690
CviJI	RGCY	8 cut(s)	18, 37, 79, 116, 188, 209, 263, 462
CviKI_1	RGCY	8 cut(s)	18, 37, 79, 116, 188, 209, 263, 462
CviQI	GTAC	4 cut(s)	148, 257, 565, 693
DdeI	CTNAG	1 cut(s)	218
DpnI	GATC	2 cut(s)	95, 639
DpnII	GATC	2 cut(s)	93, 637
EaeI	YGGCCR	1 cut(s)	114
Eam1104I	CTCTTC	1 cut(s)	25
EarI	CTCTTC	1 cut(s)	25
Eco31I	GGTCTC	1 cut(s)	155
Eco47I	GGWCC	1 cut(s)	532
Eco88I	CYCGRG	1 cut(s)	295
EcoO109I	RGGNCCY	1 cut(s)	35
FaeI	CATG	3 cut(s)	580, 644, 693
FalI	AAGNNNNNCTT	4 cut(s)	22, 54, 324, 356
FatI	CATG	3 cut(s)	576, 640, 689
FbaI	TGATCA	1 cut(s)	637
FblI	GTMKAC	1 cut(s)	6
Fnu4HI	GCNGC	3 cut(s)	60, 117, 402
Fsp4HI	GCNGC	3 cut(s)	60, 117, 402
FspBI	CTAG	1 cut(s)	260
GluI	GCNGC	3 cut(s)	60, 117, 402
HaeIII	GGCC	2 cut(s)	37, 116
HapII	CCGG	1 cut(s)	474
Hin1II	CATG	3 cut(s)	580, 644, 693
HpaII	CCGG	1 cut(s)	474
HphI	GGTGA	2 cut(s)	491, 696
Hpy166II	GTNNAC	3 cut(s)	7, 199, 482
Hpy188I	TCNGA	1 cut(s)	628
Hpy188III	TCNNGA	4 cut(s)	73, 82, 297, 349
Hpy8I	GTNNAC	3 cut(s)	7, 199, 482
HpyCH4III	ACNGT	2 cut(s)	203, 665
HpyCH4V	TGCA	4 cut(s)	327, 380, 386, 597
HpyF3I	CTNAG	1 cut(s)	218
Hsp92II	CATG	3 cut(s)	580, 644, 693
Ksp22I	TGATCA	1 cut(s)	637
Kzo9I	GATC	2 cut(s)	93, 637
LmnI	GCTCC	1 cut(s)	459
LpnPI	CCDG	7 cut(s)	104, 260, 281, 396, 487, 670, 720
Lsp1109I	GCAGC	2 cut(s)	46, 388
LweI	GCATC	3 cut(s)	433, 460, 500
MaeI	CTAG	1 cut(s)	260
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	2 cut(s)	95, 639
MboI	GATC	2 cut(s)	93, 637
MboII	GAAGA	3 cut(s)	42, 97, 479
MluCI	AATT	5 cut(s)	231, 353, 524, 568, 647
MnlI	CCTC	2 cut(s)	26, 545
MseI	TTAA	3 cut(s)	513, 522, 729
MspI	CCGG	1 cut(s)	474
NdeII	GATC	2 cut(s)	93, 637
NlaIII	CATG	3 cut(s)	580, 644, 693
NlaIV	GGNNCC	2 cut(s)	461, 655
NspV	TTCGAA	1 cut(s)	286
PaeR7I	CTCGAG	1 cut(s)	295
PaqCI	CACCTGC	1 cut(s)	391
PkrI	GCNGC	3 cut(s)	61, 118, 403
PspN4I	GGNNCC	2 cut(s)	461, 655
PspPI	GGNCC	2 cut(s)	35, 532
PstI	CTGCAG	1 cut(s)	388
PstNI	CAGNNNCTG	1 cut(s)	104
RsaI	GTAC	4 cut(s)	149, 258, 566, 694
RsaNI	GTAC	4 cut(s)	148, 257, 565, 693
SaqAI	TTAA	3 cut(s)	513, 522, 729
SatI	GCNGC	3 cut(s)	60, 117, 402
Sau3AI	GATC	2 cut(s)	93, 637
Sau96I	GGNCC	2 cut(s)	35, 532
ScaI	AGTACT	1 cut(s)	258
SetI	ASST	9 cut(s)	20, 81, 167, 190, 211, 270, 385, 434, 709
SfaNI	GCATC	3 cut(s)	433, 460, 500
SfcI	CTRYAG	1 cut(s)	384
Sfr274I	CTCGAG	1 cut(s)	295
SfuI	TTCGAA	1 cut(s)	286
SinI	GGWCC	1 cut(s)	532
SlaI	CTCGAG	1 cut(s)	295
SmlI	CTYRAG	2 cut(s)	80, 295
SmoI	CTYRAG	2 cut(s)	80, 295
Sse9I	AATT	5 cut(s)	231, 353, 524, 568, 647
SsiI	CCGC	2 cut(s)	117, 425
SspMI	CTAG	1 cut(s)	260
TaaI	ACNGT	2 cut(s)	203, 665
TaqI	TCGA	4 cut(s)	286, 296, 537, 738
TasI	AATT	5 cut(s)	231, 353, 524, 568, 647
TatI	WGTACW	4 cut(s)	147, 256, 564, 692
TauI	GCSGC	1 cut(s)	119
Tru1I	TTAA	3 cut(s)	513, 522, 729
Tru9I	TTAA	3 cut(s)	513, 522, 729
TscAI	CASTG	1 cut(s)	206
TseI	GCWGC	2 cut(s)	59, 401
TspDTI	ATGAA	4 cut(s)	345, 534, 612, 688
TspRI	CASTG	1 cut(s)	206
VpaK11BI	GGWCC	1 cut(s)	532
XapI	RAATTY	3 cut(s)	353, 524, 647
XhoI	CTCGAG	1 cut(s)	295
XmiI	GTMKAC	1 cut(s)	6
XspI	CTAG	1 cut(s)	260
ZrmI	AGTACT	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.