Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000681

Physical Location & Seq

Genomic Coordinates Forward (+)

80726918 .. 80728033

Gene Structure 1116 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022079

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGATTGGGATGCCATCGCATATAGGGTACTGGCCTACTTCTTCTTGGTGTTGTTCGGATATACTCGAAAAAAGTTTTGATGTCTGCCTTGAAGTGCTAACTGAAATCAACAAGTTTGTCGTTAGCACAAAAGAGAAGAGAGACACAGATACGTTTCTTGCGCCGTACGACTCTGTTATTCTACCAGGGAGGTTTGAACTTGATGCATTTGATTTGGGGATCCCTGAAGATGTCAGTGGTGTTCTTTCATTTGACGGGATGGAATTGGATATGGAGTTAAGGACGTCGAGGATTGGAGCTAACCCAGAAGTAAACATGGAGAATCCTCAAGAGAGTAGGTTCTCTCAAGAAGAAACTAATGGAGAACAGATAAAGGTTCCGGATATAGCATTGTCTGAAGATGGGACTCTAGGAGAGGCAAGGCAGGAAAAGAGGAAAAAGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009987 GO:0016043 GO:0022402 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

149

Amino Acids

16.64

Weight (kDa)

4.39

Isoelectric Point (pI)

53.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840
fragaria_vesca	FvH4_6g53040 FvH4_6g53040 FvH4_6g53050 FvH4_6g53050
malus_domestica	MD09G1015100.v1.1 MD09G1015200.v1.1 MD17G1015200.v1.1
prunus_persica	Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1
pyrus_communis	pycom111g01230 pycom17g01230 pycom17g01240
rosa_chinensis	RchiOBHm_Chr2g0146031 RchiOBHm_Chr2g0172041 RchiOBHm_Chr2g0172061 RchiOBHm_Chr2g0172121 RchiOBHm_Chr2g0172131 RchiOBHm_Chr2g0172161 RchiOBHm_Chr2g0173841 RchiOBHm_Chr2g0174821 RchiOBHm_Chr2g0174831
rosa_laevigata	RLG00000022078 RLG00000022079 RLG00000022228 RLG00000022298 RLG00000022299 RLG00000032768
rosa_multiflora	Rmu_co8137076.1_g000001 Rmu_sc0001716.1_g000038 Rmu_sc0003188.1_g000021 Rmu_sc0015734.1_g000001 Rmu_sc0038259.1_g000001 Rmu_sc0038259.1_g000002 Rmu_sc0040737.1_g000001 Rmu_sc0041600.1_g000001 Rmu_ssc0000252.1_g000045
rosa_roxburghii	Rroxscaffold_2G00077660 Rroxscaffold_2G00080120 Rroxscaffold_2G00080130 Rroxscaffold_2G00080290
rosa_rugosa	Rorug02G0579500 Rorug02G0579600
rosa_samantha	Rh2AG632100 Rh2AG632200 Rh2AG656700 Rh2AG656800 Rh2AG660800 Rh2AG660900 Rh2BG645600 Rh2BG645700 Rh2BG667700 Rh2BG667800 Rh2BG672200 Rh2BG672300 Rh2CG627800 Rh2CG627900 Rh2CG635000 Rh2CG635100 Rh2DG658600 Rh2DG678300 Rh2DG685300 Rh2DG685400 Rh6AG066100 Rh6BG058900
rosa_wichuraiana	Rw2G053570 Rw2G054150 Rw2G054160 Rw6G005810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	287
AccIII	TCCGGA	1 cut(s)	379
AclWI	GGATC	2 cut(s)	214, 227
AcuI	CTGAAG	2 cut(s)	246, 417
AcyI	GRCGYC	1 cut(s)	284
AfaI	GTAC	2 cut(s)	29, 167
AgsI	TTSAA	2 cut(s)	92, 197
AjnI	CCWGG	1 cut(s)	184
AluBI	AGCT	1 cut(s)	299
AluI	AGCT	1 cut(s)	299
Alw26I	GTCTC	1 cut(s)	135
AlwI	GGATC	2 cut(s)	214, 227
Aor13HI	TCCGGA	1 cut(s)	379
AoxI	GGCC	1 cut(s)	32
AspLEI	GCGC	1 cut(s)	163
BamHI	GGATCC	1 cut(s)	219
BccI	CCATC	3 cut(s)	22, 253, 395
BceAI	ACGGC	1 cut(s)	148
BciT130I	CCWGG	1 cut(s)	186
BcoDI	GTCTC	1 cut(s)	135
BfaI	CTAG	1 cut(s)	410
Bme1390I	CCNGG	1 cut(s)	186
BmiI	GGNNCC	2 cut(s)	221, 378
BmrFI	CCNGG	1 cut(s)	186
BmsI	GCATC	1 cut(s)	193
BpuEI	CTTGAG	2 cut(s)	312, 330
BsaHI	GRCGYC	1 cut(s)	284
BsaJI	CCNNGG	1 cut(s)	185
BsaWI	WCCGGW	1 cut(s)	379
Bse1I	ACTGG	1 cut(s)	35
BseAI	TCCGGA	1 cut(s)	379
BseBI	CCWGG	1 cut(s)	186
BseDI	CCNNGG	1 cut(s)	185
BseGI	GGATG	2 cut(s)	15, 264
BseNI	ACTGG	1 cut(s)	35
BshFI	GGCC	1 cut(s)	34
BsiSI	CCGG	1 cut(s)	380
BsiWI	CGTACG	1 cut(s)	165
BslFI	GGGAC	1 cut(s)	418
BsmAI	GTCTC	1 cut(s)	135
BsmFI	GGGAC	1 cut(s)	418
BsnI	GGCC	1 cut(s)	34
Bsp13I	TCCGGA	1 cut(s)	379
Bsp143I	GATC	1 cut(s)	219
BspANI	GGCC	1 cut(s)	34
BspEI	TCCGGA	1 cut(s)	379
BspLI	GGNNCC	2 cut(s)	221, 378
BspPI	GGATC	2 cut(s)	214, 227
BsrI	ACTGG	1 cut(s)	35
BssECI	CCNNGG	1 cut(s)	185
BssMI	GATC	1 cut(s)	219
BssNI	GRCGYC	1 cut(s)	284
Bst2UI	CCWGG	1 cut(s)	186
Bst6I	CTCTTC	1 cut(s)	131
BstACI	GRCGYC	1 cut(s)	284
BstF5I	GGATG	2 cut(s)	15, 264
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	1 cut(s)	222
BstMAI	GTCTC	1 cut(s)	135
BstMBI	GATC	1 cut(s)	219
BstNI	CCWGG	1 cut(s)	186
BstSCI	CCNGG	1 cut(s)	184
BstX2I	RGATCY	1 cut(s)	219
BstYI	RGATCY	1 cut(s)	219
BsuRI	GGCC	1 cut(s)	34
BtsCI	GGATG	2 cut(s)	15, 264
BtsIMutI	CAGTG	1 cut(s)	241
CfoI	GCGC	1 cut(s)	163
Csp6I	GTAC	2 cut(s)	28, 166
CviAII	CATG	1 cut(s)	316
CviJI	RGCY	2 cut(s)	34, 299
CviKI_1	RGCY	2 cut(s)	34, 299
CviQI	GTAC	2 cut(s)	28, 166
DpnI	GATC	1 cut(s)	221
DpnII	GATC	1 cut(s)	219
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
Eco57I	CTGAAG	2 cut(s)	246, 417
EcoRII	CCWGG	1 cut(s)	184
EcoT22I	ATGCAT	1 cut(s)	208
FaeI	CATG	1 cut(s)	319
FaiI	YATR	6 cut(s)	21, 23, 62, 272, 317, 386
FaqI	GGGAC	1 cut(s)	418
FatI	CATG	1 cut(s)	315
FokI	GGATG	2 cut(s)	22, 271
FspBI	CTAG	1 cut(s)	410
GlaI	GCGC	1 cut(s)	162
HaeIII	GGCC	1 cut(s)	34
HapII	CCGG	1 cut(s)	380
HhaI	GCGC	1 cut(s)	163
Hin1I	GRCGYC	1 cut(s)	284
Hin1II	CATG	1 cut(s)	319
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HinfI	GANTC	3 cut(s)	170, 322, 406
HpaII	CCGG	1 cut(s)	380
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188I	TCNGA	3 cut(s)	58, 397, 446
Hpy188III	TCNNGA	3 cut(s)	329, 347, 380
Hpy8I	GTNNAC	1 cut(s)	313
Hpy99I	CGWCG	1 cut(s)	289
HpyCH4IV	ACGT	2 cut(s)	152, 284
HpyCH4V	TGCA	1 cut(s)	206
HpySE526I	ACGT	2 cut(s)	152, 284
Hsp92I	GRCGYC	1 cut(s)	284
Hsp92II	CATG	1 cut(s)	319
HspAI	GCGC	1 cut(s)	161
Kpn2I	TCCGGA	1 cut(s)	379
Kzo9I	GATC	1 cut(s)	219
LmnI	GCTCC	1 cut(s)	296
LpnPI	CCDG	7 cut(s)	16, 171, 198, 237, 318, 393, 410
LweI	GCATC	1 cut(s)	193
MaeI	CTAG	1 cut(s)	410
MaeII	ACGT	2 cut(s)	152, 284
MalI	GATC	1 cut(s)	221
MboI	GATC	1 cut(s)	219
MboII	GAAGA	5 cut(s)	33, 148, 239, 362, 410
MflI	RGATCY	1 cut(s)	219
MluCI	AATT	1 cut(s)	263
MlyI	GAGTC	2 cut(s)	164, 400
MnlI	CCTC	5 cut(s)	183, 282, 336, 409, 426
Mph1103I	ATGCAT	1 cut(s)	208
MroI	TCCGGA	1 cut(s)	379
MseI	TTAA	1 cut(s)	278
MspI	CCGG	1 cut(s)	380
MspR9I	CCNGG	1 cut(s)	186
MvaI	CCWGG	1 cut(s)	186
NdeII	GATC	1 cut(s)	219
NlaIII	CATG	1 cut(s)	319
NlaIV	GGNNCC	2 cut(s)	221, 378
NsiI	ATGCAT	1 cut(s)	208
PfeI	GAWTC	1 cut(s)	322
Pfl23II	CGTACG	1 cut(s)	165
PleI	GAGTC	2 cut(s)	164, 400
PpsI	GAGTC	2 cut(s)	164, 400
Psp6I	CCWGG	1 cut(s)	184
PspGI	CCWGG	1 cut(s)	184
PspLI	CGTACG	1 cut(s)	165
PspN4I	GGNNCC	2 cut(s)	221, 378
PsuI	RGATCY	1 cut(s)	219
RsaI	GTAC	2 cut(s)	29, 167
RsaNI	GTAC	2 cut(s)	28, 166
SaqAI	TTAA	1 cut(s)	278
Sau3AI	GATC	1 cut(s)	219
SchI	GAGTC	2 cut(s)	164, 400
ScrFI	CCNGG	1 cut(s)	186
SetI	ASST	7 cut(s)	155, 194, 287, 301, 341, 378, 444
SfaNI	GCATC	1 cut(s)	193
SmlI	CTYRAG	2 cut(s)	327, 345
SmoI	CTYRAG	2 cut(s)	327, 345
Sse9I	AATT	1 cut(s)	263
SspMI	CTAG	1 cut(s)	410
StyD4I	CCNGG	1 cut(s)	184
TaiI	ACGT	2 cut(s)	155, 287
TaqI	TCGA	2 cut(s)	66, 287
TasI	AATT	1 cut(s)	263
TfiI	GAWTC	1 cut(s)	322
Tru1I	TTAA	1 cut(s)	278
Tru9I	TTAA	1 cut(s)	278
TscAI	CASTG	1 cut(s)	241
TspDTI	ATGAA	1 cut(s)	237
TspRI	CASTG	1 cut(s)	241
XspI	CTAG	1 cut(s)	410
ZraI	GACGTC	1 cut(s)	285
Zsp2I	ATGCAT	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.