Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003188.1

Orthogroup ID

OG0000681

Physical Location & Seq

Genomic Coordinates Forward (+)

79701 .. 81716

Gene Structure 2016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003188.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

atggcgtcttggaattcagtcccactcgaaatcacatacgaagttctgggttggttggcttcatttcatggtccatcggcttttacccacaaagtactagcctacctacttctgagtgttgttcgaatatactcgagaaaagttgaatatctttttgatgactgcaatgaagtgctactagacatcaagaaatttgtgtctagcacaaaagacaatgcacctgcagaaatgctgtgtgcggcttatcactctgcaatcataccggataggtttgaacttgatgcttttgatatggggtgccttgaagatgtcagtggtatgatcatgtggaatttggtgcctgccacggtattttctcaacttattacgcctcagtcagaagataaagactccagatatagcagtgctgaagatggaattcaggaagaaggtcagaagactcaaaaccatgagatcttttgtgggaataatagagaaccttcctgccatgtgataagtggtgaggatcatcaaagtgaagtagaggagatgatggaaatagacttggtgcaaccagaaaatcagagttttcagattacaagagaagagcatagtctaagaaacttagaagctgacatggagaatctgaaaactgttacattttctcaagaagaatccctgggccttgatgtggtttgttgggccaagaaacctcaagaacttgtttgtttatatggagaagagaatcataatgatgaagagccaactaagttacaggacgtgattgcaccagataccatgaaaagtattctggaagaacatccagatcccctctcagttgcatattatggcagtcctgatgccaagcagccagatgctataggtgttactacaacaaaattgacggctgttcccagaccagcttccaagaagttggctcggatttctagtaaaagaaagtgtgtctttgatttagtagtgctgcctaataagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009987 GO:0016043 GO:0022402 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

324

Amino Acids

36.46

Weight (kDa)

4.67

Isoelectric Point (pI)

51.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840
fragaria_vesca	FvH4_6g53040 FvH4_6g53040 FvH4_6g53050 FvH4_6g53050
malus_domestica	MD09G1015100.v1.1 MD09G1015200.v1.1 MD17G1015200.v1.1
prunus_persica	Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1
pyrus_communis	pycom111g01230 pycom17g01230 pycom17g01240
rosa_chinensis	RchiOBHm_Chr2g0146031 RchiOBHm_Chr2g0172041 RchiOBHm_Chr2g0172061 RchiOBHm_Chr2g0172121 RchiOBHm_Chr2g0172131 RchiOBHm_Chr2g0172161 RchiOBHm_Chr2g0173841 RchiOBHm_Chr2g0174821 RchiOBHm_Chr2g0174831
rosa_laevigata	RLG00000022078 RLG00000022079 RLG00000022228 RLG00000022298 RLG00000022299 RLG00000032768
rosa_multiflora	Rmu_co8137076.1_g000001 Rmu_sc0001716.1_g000038 Rmu_sc0003188.1_g000021 Rmu_sc0015734.1_g000001 Rmu_sc0038259.1_g000001 Rmu_sc0038259.1_g000002 Rmu_sc0040737.1_g000001 Rmu_sc0041600.1_g000001 Rmu_ssc0000252.1_g000045
rosa_roxburghii	Rroxscaffold_2G00077660 Rroxscaffold_2G00080120 Rroxscaffold_2G00080130 Rroxscaffold_2G00080290
rosa_rugosa	Rorug02G0579500 Rorug02G0579600
rosa_samantha	Rh2AG632100 Rh2AG632200 Rh2AG656700 Rh2AG656800 Rh2AG660800 Rh2AG660900 Rh2BG645600 Rh2BG645700 Rh2BG667700 Rh2BG667800 Rh2BG672200 Rh2BG672300 Rh2CG627800 Rh2CG627900 Rh2CG635000 Rh2CG635100 Rh2DG658600 Rh2DG678300 Rh2DG685300 Rh2DG685400 Rh6AG066100 Rh6BG058900
rosa_wichuraiana	Rw2G053570 Rw2G054150 Rw2G054160 Rw6G005810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	229
Acc36I	ACCTGC	1 cut(s)	229
AccB1I	GGYRCC	2 cut(s)	297, 337
AciI	CCGC	1 cut(s)	239
AclWI	GGATC	2 cut(s)	513, 800
AcsI	RAATTY	4 cut(s)	13, 191, 331, 417
AcuI	CTGAAG	1 cut(s)	429
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	96
AfiI	CCNNNNNNNGG	1 cut(s)	670
AgsI	TTSAA	3 cut(s)	146, 275, 305
AjiI	CACGTC	1 cut(s)	760
AjnI	CCWGG	1 cut(s)	657
AluBI	AGCT	2 cut(s)	611, 902
AluI	AGCT	2 cut(s)	611, 902
AlwI	GGATC	2 cut(s)	513, 800
Ama87I	CYCGRG	1 cut(s)	133
AoxI	GGCC	2 cut(s)	661, 681
ApeKI	GCWGC	2 cut(s)	847, 961
ApoI	RAATTY	4 cut(s)	13, 191, 331, 417
AspS9I	GGNCC	3 cut(s)	71, 661, 681
AsuHPI	GGTGA	1 cut(s)	512
AsuII	TTCGAA	1 cut(s)	124
AvaI	CYCGRG	1 cut(s)	133
AvaII	GGWCC	1 cut(s)	71
BanI	GGYRCC	2 cut(s)	297, 337
BbsI	GAAGAC	1 cut(s)	443
BbvI	GCAGC	2 cut(s)	859, 948
BccI	CCATC	3 cut(s)	82, 407, 526
BceAI	ACGGC	1 cut(s)	900
BciT130I	CCWGG	1 cut(s)	659
BclI	TGATCA	1 cut(s)	321
BfaI	CTAG	4 cut(s)	98, 179, 201, 927
BfmI	CTRYAG	2 cut(s)	222, 858
BfuAI	ACCTGC	1 cut(s)	229
BglII	AGATCT	1 cut(s)	453
BisI	GCNGC	3 cut(s)	240, 848, 962
BlsI	GCNGC	3 cut(s)	241, 849, 963
BmcAI	AGTACT	1 cut(s)	96
Bme1390I	CCNGG	1 cut(s)	659
Bme18I	GGWCC	1 cut(s)	71
BmeT110I	CYCGRG	1 cut(s)	133
BmgBI	CACGTC	1 cut(s)	760
BmgT120I	GGNCC	3 cut(s)	71, 661, 681
BmiI	GGNNCC	2 cut(s)	299, 339
BmrFI	CCNGG	1 cut(s)	659
BmsI	GCATC	3 cut(s)	271, 829, 844
BpiI	GAAGAC	1 cut(s)	443
BpmI	CTGGAG	1 cut(s)	376
Bpu14I	TTCGAA	1 cut(s)	124
BpuEI	CTTGAG	2 cut(s)	630, 678
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	345, 657, 658
BsaWI	WCCGGW	1 cut(s)	262
Bsc4I	CCNNNNNNNGG	1 cut(s)	670
Bse3DI	GCAATG	1 cut(s)	172
BseBI	CCWGG	1 cut(s)	659
BseDI	CCNNGG	3 cut(s)	345, 657, 658
BseGI	GGATG	1 cut(s)	799
BseLI	CCNNNNNNNGG	1 cut(s)	670
BseMI	GCAATG	1 cut(s)	172
BseMII	CTCAG	3 cut(s)	104, 386, 828
BseRI	GAGGAG	1 cut(s)	539
BseXI	GCAGC	2 cut(s)	859, 948
BshFI	GGCC	2 cut(s)	663, 683
BshNI	GGYRCC	2 cut(s)	297, 337
BsiHKCI	CYCGRG	1 cut(s)	133
BsiSI	CCGG	1 cut(s)	263
BslFI	GGGAC	1 cut(s)	5
BslI	CCNNNNNNNGG	1 cut(s)	670
BsmFI	GGGAC	1 cut(s)	5
BsnI	GGCC	2 cut(s)	663, 683
BsoBI	CYCGRG	1 cut(s)	133
Bsp119I	TTCGAA	1 cut(s)	124
Bsp143I	GATC	4 cut(s)	321, 453, 505, 805
BspACI	CCGC	1 cut(s)	239
BspANI	GGCC	2 cut(s)	663, 683
BspCNI	CTCAG	3 cut(s)	105, 385, 827
BspLI	GGNNCC	2 cut(s)	299, 339
BspMAI	CTGCAG	1 cut(s)	226
BspMI	ACCTGC	1 cut(s)	229
BspPI	GGATC	2 cut(s)	513, 800
BspQI	GCTCTTC	2 cut(s)	579, 732
BspT104I	TTCGAA	1 cut(s)	124
BspT107I	GGYRCC	2 cut(s)	297, 337
BsrDI	GCAATG	1 cut(s)	172
BssECI	CCNNGG	3 cut(s)	345, 657, 658
BssMI	GATC	4 cut(s)	321, 453, 505, 805
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	659
Bst4CI	ACNGT	2 cut(s)	349, 634
Bst6I	CTCTTC	3 cut(s)	579, 714, 732
BstACI	GRCGYC	1 cut(s)	5
BstBI	TTCGAA	1 cut(s)	124
BstC8I	GCNNGC	1 cut(s)	342
BstDEI	CTNAG	6 cut(s)	113, 372, 596, 604, 747, 814
BstDSI	CCRYGG	1 cut(s)	345
BstF5I	GGATG	1 cut(s)	799
BstKTI	GATC	4 cut(s)	324, 456, 508, 808
BstMBI	GATC	4 cut(s)	321, 453, 505, 805
BstNI	CCWGG	1 cut(s)	659
BstSCI	CCNGG	1 cut(s)	657
BstSFI	CTRYAG	2 cut(s)	222, 858
BstV1I	GCAGC	2 cut(s)	859, 948
BstV2I	GAAGAC	1 cut(s)	443
BstX2I	RGATCY	2 cut(s)	453, 805
BstXI	CCANNNNNNTGG	1 cut(s)	913
BstYI	RGATCY	2 cut(s)	453, 805
BsuRI	GGCC	2 cut(s)	663, 683
BtgI	CCRYGG	1 cut(s)	345
BtrI	CACGTC	1 cut(s)	760
BtsCI	GGATG	1 cut(s)	799
BtsI	GCAGTG	1 cut(s)	409
BtsIMutI	CAGTG	2 cut(s)	319, 409
BveI	ACCTGC	1 cut(s)	229
Cac8I	GCNNGC	1 cut(s)	342
Cfr13I	GGNCC	3 cut(s)	71, 661, 681
Csp6I	GTAC	1 cut(s)	95
CviAII	CATG	6 cut(s)	68, 325, 449, 488, 616, 778
CviQI	GTAC	1 cut(s)	95
DdeI	CTNAG	6 cut(s)	113, 372, 596, 604, 747, 814
DpnI	GATC	4 cut(s)	323, 455, 507, 807
DpnII	GATC	4 cut(s)	321, 453, 505, 805
Eam1104I	CTCTTC	3 cut(s)	579, 714, 732
EarI	CTCTTC	3 cut(s)	579, 714, 732
Eco47I	GGWCC	1 cut(s)	71
Eco57I	CTGAAG	1 cut(s)	429
Eco88I	CYCGRG	1 cut(s)	133
EcoRI	GAATTC	2 cut(s)	13, 417
EcoRII	CCWGG	1 cut(s)	657
FaeI	CATG	6 cut(s)	71, 328, 452, 491, 619, 781
FalI	AAGNNNNNCTT	2 cut(s)	929, 961
FaqI	GGGAC	1 cut(s)	5
FatI	CATG	6 cut(s)	67, 324, 448, 487, 615, 777
FbaI	TGATCA	1 cut(s)	321
Fnu4HI	GCNGC	3 cut(s)	240, 848, 962
FokI	GGATG	1 cut(s)	786
Fsp4HI	GCNGC	3 cut(s)	240, 848, 962
FspBI	CTAG	4 cut(s)	98, 179, 201, 927
GluI	GCNGC	3 cut(s)	240, 848, 962
GsuI	CTGGAG	1 cut(s)	376
HaeIII	GGCC	2 cut(s)	663, 683
HapII	CCGG	1 cut(s)	263
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	6 cut(s)	71, 328, 452, 491, 619, 781
HinfI	GANTC	5 cut(s)	389, 439, 622, 653, 724
HpaII	CCGG	1 cut(s)	263
HphI	GGTGA	1 cut(s)	512
Hpy188I	TCNGA	7 cut(s)	114, 379, 435, 564, 573, 627, 921
Hpy188III	TCNNGA	9 cut(s)	135, 187, 393, 422, 647, 695, 791, 803, 836
HpyAV	CCTTC	2 cut(s)	422, 489
HpyCH4III	ACNGT	2 cut(s)	349, 634
HpyCH4IV	ACGT	1 cut(s)	759
HpyCH4V	TGCA	7 cut(s)	165, 218, 224, 254, 550, 767, 821
HpyF3I	CTNAG	6 cut(s)	113, 372, 596, 604, 747, 814
HpySE526I	ACGT	1 cut(s)	759
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	6 cut(s)	71, 328, 452, 491, 619, 781
Ksp22I	TGATCA	1 cut(s)	321
Kzo9I	GATC	4 cut(s)	321, 453, 505, 805
LguI	GCTCTTC	2 cut(s)	579, 732
Lsp1109I	GCAGC	2 cut(s)	859, 948
LweI	GCATC	3 cut(s)	271, 829, 844
MaeI	CTAG	4 cut(s)	98, 179, 201, 927
MaeII	ACGT	1 cut(s)	759
MaeIII	GTNAC	3 cut(s)	634, 750, 865
MalI	GATC	4 cut(s)	323, 455, 507, 807
MboI	GATC	4 cut(s)	321, 453, 505, 805
MflI	RGATCY	2 cut(s)	453, 805
MluCI	AATT	5 cut(s)	13, 191, 331, 417, 878
MlyI	GAGTC	2 cut(s)	383, 433
MnlI	CCTC	5 cut(s)	381, 496, 517, 702, 821
MslI	CAYNNNNRTG	2 cut(s)	513, 732
MspI	CCGG	1 cut(s)	263
MspR9I	CCNGG	1 cut(s)	659
MvaI	CCWGG	1 cut(s)	659
NdeII	GATC	4 cut(s)	321, 453, 505, 805
NlaIII	CATG	6 cut(s)	71, 328, 452, 491, 619, 781
NlaIV	GGNNCC	2 cut(s)	299, 339
NspV	TTCGAA	1 cut(s)	124
PaeR7I	CTCGAG	1 cut(s)	133
PaqCI	CACCTGC	1 cut(s)	229
PasI	CCCWGGG	1 cut(s)	658
PciSI	GCTCTTC	2 cut(s)	579, 732
PfeI	GAWTC	3 cut(s)	622, 653, 724
PkrI	GCNGC	3 cut(s)	241, 849, 963
PleI	GAGTC	2 cut(s)	383, 433
PpsI	GAGTC	2 cut(s)	383, 433
Psp6I	CCWGG	1 cut(s)	657
PspGI	CCWGG	1 cut(s)	657
PspN4I	GGNNCC	2 cut(s)	299, 339
PspPI	GGNCC	3 cut(s)	71, 661, 681
PstI	CTGCAG	1 cut(s)	226
PsuI	RGATCY	2 cut(s)	453, 805
RsaI	GTAC	1 cut(s)	96
RsaNI	GTAC	1 cut(s)	95
RseI	CAYNNNNRTG	2 cut(s)	513, 732
SapI	GCTCTTC	2 cut(s)	579, 732
SatI	GCNGC	3 cut(s)	240, 848, 962
Sau3AI	GATC	4 cut(s)	321, 453, 505, 805
Sau96I	GGNCC	3 cut(s)	71, 661, 681
ScaI	AGTACT	1 cut(s)	96
SchI	GAGTC	2 cut(s)	383, 433
ScrFI	CCNGG	1 cut(s)	659
SfaNI	GCATC	3 cut(s)	271, 829, 844
SfcI	CTRYAG	2 cut(s)	222, 858
Sfr274I	CTCGAG	1 cut(s)	133
SfuI	TTCGAA	1 cut(s)	124
SinI	GGWCC	1 cut(s)	71
SlaI	CTCGAG	1 cut(s)	133
SmiMI	CAYNNNNRTG	2 cut(s)	513, 732
SmlI	CTYRAG	3 cut(s)	133, 645, 693
SmoI	CTYRAG	3 cut(s)	133, 645, 693
Sse9I	AATT	5 cut(s)	13, 191, 331, 417, 878
SsiI	CCGC	1 cut(s)	239
SspMI	CTAG	4 cut(s)	98, 179, 201, 927
StyD4I	CCNGG	1 cut(s)	657
TaaI	ACNGT	2 cut(s)	349, 634
TaiI	ACGT	1 cut(s)	762
TaqI	TCGA	3 cut(s)	27, 124, 134
TasI	AATT	5 cut(s)	13, 191, 331, 417, 878
TatI	WGTACW	1 cut(s)	94
TauI	GCSGC	1 cut(s)	242
TfiI	GAWTC	3 cut(s)	622, 653, 724
TscAI	CASTG	2 cut(s)	319, 409
TseI	GCWGC	2 cut(s)	847, 961
TspDTI	ATGAA	5 cut(s)	51, 56, 183, 750, 794
TspRI	CASTG	2 cut(s)	319, 409
VpaK11BI	GGWCC	1 cut(s)	71
XapI	RAATTY	4 cut(s)	13, 191, 331, 417
XcmI	CCANNNNNNNNNTGG	1 cut(s)	494
XhoI	CTCGAG	1 cut(s)	133
XspI	CTAG	4 cut(s)	98, 179, 201, 927
ZrmI	AGTACT	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.