Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000681

Physical Location & Seq

Genomic Coordinates Forward (+)

86530750 .. 86533198

Gene Structure 2449 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG645600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGCGTTTACTTTGGACGTGTTTGAGGGCACTTCTGATCTCAGATAAAATTTTAAAGGATGAATGGGATGGTGTCGCGTATAGAGTACAAGCCTACCTCCTTCTGGGTGTTGTTCGAATATACTCGAGAAAAGTTGAATATCTTTTTGATGACTGCAATGAAGTGCCACTAGGCATCAAGAAATTTGTGTTTAACACAAAAGAAATGCACCTGCAGAAATGCTGTGTGCCGCTTATGACTCTATTACCATACCGGATAGGTTTGAACTTGATGCTTTTGATGTGGGGAGCCTTGAAGATTGAACATTTGGTGCCTCACAAAGAAATCACGCTTAGAGAGGAGACAATGGAAGACTCGGTGCAACTGAAGCTGACATGGAGAATCAGAAAAGAAGAATCCTTGGGCCTTGATGTGCTTTGTGGAGCCAAGAAACCTCAAGAACTTTTTTGTTCATATGGAGAAGAGAATCATAATGATGAAGAGCCGACTAAGTTACAGGACATGATTGCACCAGATACCATAAAAAGTATTCTGGAAGAAGATCCAGATCCCCTCTCAGTTGCATATGATGGCAGTCCTGATGCCAAGCAGCCATATAATCTAGGTTTTACTACACCGAAATTGACGTCTGTTCCCAGACCAGCTTCCAAGAAGTCGGCTCGGATTTCTAGGAAAAGAAACTGTGTCTTTGATGATATAGTAGTGCTGCCTAATGAGGCAATCAGGCAAAGTATACATGATGCTAGTGACTTGGTTGCTAAAAAGAAAGAAGTTCCCAAAAATGCCCATGCTGTTTGGAAAACTAATCGAATTGGAAATCTTGCACAGAATTTCTTGGAGCCATTGAAATCTAACGTTTCGCAAGAGCTTAGGTCCCTCTTATGCAAAAGGAAGTTTAGGAAATTAAAGAGTACTCCCGAGAAGTTAGATTTGTTGGCCTGTCGAAGGACTGGTATATCAGAGCAAATAGAGGTTGTAAATACGGAAACTGTTGAACCTACAGAAGACTTAGATGTGTTGGAATATCCATGCACTGTTGGATTAGAACAAGCAGAAATTGCACCAGACACACCTGTTCTTCGCTCAAAATCAATCAAATCATTTCATAGTCCAAGGAGTCCTGAAGTTGCTGATCTGAATGTAGTAAGACCTGAGACATCTGGAAGGATAGAAAAAGAACCGTCTATGGGAGCAGAGCAAACTTTCCCTTCTGGAAGCATGGAAGAAGTACAACCATCTCTAGATAGGGATGAAGGGCATGACTTCAATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009987 GO:0016043 GO:0022402 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

424

Amino Acids

48.23

Weight (kDa)

5.9

Isoelectric Point (pI)

48.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad21_Rec8_N	PF04825	16 - 67	8.7e-11	N terminus of Rad21 / Rec8 like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840
fragaria_vesca	FvH4_6g53040 FvH4_6g53040 FvH4_6g53050 FvH4_6g53050
malus_domestica	MD09G1015100.v1.1 MD09G1015200.v1.1 MD17G1015200.v1.1
prunus_persica	Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1
pyrus_communis	pycom111g01230 pycom17g01230 pycom17g01240
rosa_chinensis	RchiOBHm_Chr2g0146031 RchiOBHm_Chr2g0172041 RchiOBHm_Chr2g0172061 RchiOBHm_Chr2g0172121 RchiOBHm_Chr2g0172131 RchiOBHm_Chr2g0172161 RchiOBHm_Chr2g0173841 RchiOBHm_Chr2g0174821 RchiOBHm_Chr2g0174831
rosa_laevigata	RLG00000022078 RLG00000022079 RLG00000022228 RLG00000022298 RLG00000022299 RLG00000032768
rosa_multiflora	Rmu_co8137076.1_g000001 Rmu_sc0001716.1_g000038 Rmu_sc0003188.1_g000021 Rmu_sc0015734.1_g000001 Rmu_sc0038259.1_g000001 Rmu_sc0038259.1_g000002 Rmu_sc0040737.1_g000001 Rmu_sc0041600.1_g000001 Rmu_ssc0000252.1_g000045
rosa_roxburghii	Rroxscaffold_2G00077660 Rroxscaffold_2G00080120 Rroxscaffold_2G00080130 Rroxscaffold_2G00080290
rosa_rugosa	Rorug02G0579500 Rorug02G0579600
rosa_samantha	Rh2AG632100 Rh2AG632200 Rh2AG656700 Rh2AG656800 Rh2AG660800 Rh2AG660900 Rh2BG645600 Rh2BG645700 Rh2BG667700 Rh2BG667800 Rh2BG672200 Rh2BG672300 Rh2CG627800 Rh2CG627900 Rh2CG635000 Rh2CG635100 Rh2DG658600 Rh2DG678300 Rh2DG685300 Rh2DG685400 Rh6AG066100 Rh6BG058900
rosa_wichuraiana	Rw2G053570 Rw2G054150 Rw2G054160 Rw6G005810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	219
AatII	GACGTC	1 cut(s)	629
Acc36I	ACCTGC	1 cut(s)	219
AccB1I	GGYRCC	1 cut(s)	310
AccI	GTMKAC	1 cut(s)	733
AccII	CGCG	1 cut(s)	77
AciI	CCGC	1 cut(s)	230
AclI	AACGTT	1 cut(s)	855
AclWI	GGATC	2 cut(s)	536, 542
AcsI	RAATTY	3 cut(s)	48, 182, 829
AcuI	CTGAAG	2 cut(s)	386, 1143
AcyI	GRCGYC	1 cut(s)	626
AfaI	GTAC	3 cut(s)	87, 913, 1230
AfiI	CCNNNNNNNGG	3 cut(s)	103, 945, 1187
AflIII	ACRYGT	1 cut(s)	17
AgsI	TTSAA	7 cut(s)	137, 265, 295, 302, 847, 995, 1267
AjiI	CACGTC	1 cut(s)	18
AluBI	AGCT	3 cut(s)	370, 644, 868
AluI	AGCT	3 cut(s)	370, 644, 868
Alw26I	GTCTC	2 cut(s)	335, 1148
AlwI	GGATC	2 cut(s)	536, 542
Ama87I	CYCGRG	2 cut(s)	124, 917
AoxI	GGCC	2 cut(s)	403, 936
ApeKI	GCWGC	2 cut(s)	589, 706
ApoI	RAATTY	3 cut(s)	48, 182, 829
ArsI	GACNNNNNNTTYG	2 cut(s)	611, 643
AspS9I	GGNCC	2 cut(s)	403, 873
AsuII	TTCGAA	1 cut(s)	115
AvaI	CYCGRG	2 cut(s)	124, 917
AvaII	GGWCC	1 cut(s)	873
BaeGI	GKGCMC	1 cut(s)	31
BanI	GGYRCC	1 cut(s)	310
BbsI	GAAGAC	2 cut(s)	357, 1011
BbvI	GCAGC	2 cut(s)	601, 693
BccI	CCATC	3 cut(s)	62, 563, 1243
BcoDI	GTCTC	2 cut(s)	335, 1148
BfaI	CTAG	5 cut(s)	170, 602, 669, 744, 1241
BfmI	CTRYAG	2 cut(s)	212, 999
BfuAI	ACCTGC	1 cut(s)	219
BisI	GCNGC	3 cut(s)	230, 590, 707
BlsI	GCNGC	3 cut(s)	231, 591, 708
BmcAI	AGTACT	1 cut(s)	913
Bme18I	GGWCC	1 cut(s)	873
BmeT110I	CYCGRG	2 cut(s)	124, 917
BmgBI	CACGTC	1 cut(s)	18
BmgT120I	GGNCC	2 cut(s)	403, 873
BmiI	GGNNCC	5 cut(s)	289, 312, 424, 840, 875
BmsI	GCATC	4 cut(s)	183, 261, 571, 730
BpiI	GAAGAC	2 cut(s)	357, 1011
Bpu10I	CCTNAGC	1 cut(s)	869
Bpu14I	TTCGAA	1 cut(s)	115
BpuEI	CTTGAG	1 cut(s)	420
BsaBI	GATNNNNATC	1 cut(s)	546
BsaHI	GRCGYC	1 cut(s)	626
BsaJI	CCNNGG	2 cut(s)	399, 1112
BsaWI	WCCGGW	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	3 cut(s)	103, 945, 1187
Bse1I	ACTGG	1 cut(s)	955
Bse3DI	GCAATG	1 cut(s)	163
Bse8I	GATNNNNATC	1 cut(s)	546
BseDI	CCNNGG	2 cut(s)	399, 1112
BseGI	GGATG	3 cut(s)	64, 73, 1255
BseJI	GATNNNNATC	1 cut(s)	546
BseLI	CCNNNNNNNGG	3 cut(s)	103, 945, 1187
BseMI	GCAATG	1 cut(s)	163
BseMII	CTCAG	3 cut(s)	54, 570, 1143
BseNI	ACTGG	1 cut(s)	955
BseRI	GAGGAG	1 cut(s)	353
BseSI	GKGCMC	1 cut(s)	31
BseXI	GCAGC	2 cut(s)	601, 693
Bsh1236I	CGCG	1 cut(s)	77
BshFI	GGCC	2 cut(s)	405, 938
BshNI	GGYRCC	1 cut(s)	310
BsiHKCI	CYCGRG	2 cut(s)	124, 917
BsiSI	CCGG	1 cut(s)	253
BslFI	GGGAC	1 cut(s)	859
BslI	CCNNNNNNNGG	3 cut(s)	103, 945, 1187
BsmAI	GTCTC	2 cut(s)	335, 1148
BsmFI	GGGAC	1 cut(s)	859
BsnI	GGCC	2 cut(s)	405, 938
BsoBI	CYCGRG	2 cut(s)	124, 917
Bsp119I	TTCGAA	1 cut(s)	115
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	4 cut(s)	36, 541, 547, 1132
BspACI	CCGC	1 cut(s)	230
BspANI	GGCC	2 cut(s)	405, 938
BspCNI	CTCAG	3 cut(s)	53, 569, 1144
BspFNI	CGCG	1 cut(s)	77
BspLI	GGNNCC	5 cut(s)	289, 312, 424, 840, 875
BspMAI	CTGCAG	1 cut(s)	216
BspMI	ACCTGC	1 cut(s)	219
BspPI	GGATC	2 cut(s)	536, 542
BspQI	GCTCTTC	1 cut(s)	474
BspT104I	TTCGAA	1 cut(s)	115
BspT107I	GGYRCC	1 cut(s)	310
BsrDI	GCAATG	1 cut(s)	163
BsrI	ACTGG	1 cut(s)	955
BssECI	CCNNGG	2 cut(s)	399, 1112
BssMI	GATC	4 cut(s)	36, 541, 547, 1132
BssNAI	GTATAC	1 cut(s)	734
BssNI	GRCGYC	1 cut(s)	626
BssT1I	CCWWGG	2 cut(s)	399, 1112
Bst1107I	GTATAC	1 cut(s)	734
Bst4CI	ACNGT	4 cut(s)	683, 991, 1036, 1182
Bst6I	CTCTTC	2 cut(s)	456, 474
BstACI	GRCGYC	1 cut(s)	626
BstAPI	GCANNNNNTGC	1 cut(s)	1058
BstBI	TTCGAA	1 cut(s)	115
BstDEI	CTNAG	7 cut(s)	40, 332, 489, 556, 869, 1009, 1152
BstENI	CCTNNNNNAGG	1 cut(s)	943
BstF5I	GGATG	3 cut(s)	64, 73, 1255
BstFNI	CGCG	1 cut(s)	77
BstKTI	GATC	4 cut(s)	39, 544, 550, 1135
BstMAI	GTCTC	2 cut(s)	335, 1148
BstMBI	GATC	4 cut(s)	36, 541, 547, 1132
BstMWI	GCNNNNNNNGC	2 cut(s)	367, 1058
BstSFI	CTRYAG	2 cut(s)	212, 999
BstSLI	GKGCMC	1 cut(s)	31
BstUI	CGCG	1 cut(s)	77
BstV1I	GCAGC	2 cut(s)	601, 693
BstV2I	GAAGAC	2 cut(s)	357, 1011
BstX2I	RGATCY	2 cut(s)	541, 547
BstYI	RGATCY	2 cut(s)	541, 547
BstZ17I	GTATAC	1 cut(s)	734
BsuRI	GGCC	2 cut(s)	405, 938
BtrI	CACGTC	1 cut(s)	18
BtsCI	GGATG	3 cut(s)	64, 73, 1255
BtsIMutI	CAGTG	1 cut(s)	1032
BveI	ACCTGC	1 cut(s)	219
Cfr13I	GGNCC	2 cut(s)	403, 873
Csp6I	GTAC	3 cut(s)	86, 912, 1229
CviAII	CATG	7 cut(s)	375, 502, 737, 788, 1029, 1219, 1259
CviQI	GTAC	3 cut(s)	86, 912, 1229
DdeI	CTNAG	7 cut(s)	40, 332, 489, 556, 869, 1009, 1152
DpnI	GATC	4 cut(s)	38, 543, 549, 1134
DpnII	GATC	4 cut(s)	36, 541, 547, 1132
DraI	TTTAAA	1 cut(s)	54
Eam1104I	CTCTTC	2 cut(s)	456, 474
EarI	CTCTTC	2 cut(s)	456, 474
Eco130I	CCWWGG	2 cut(s)	399, 1112
Eco47I	GGWCC	1 cut(s)	873
Eco57I	CTGAAG	2 cut(s)	386, 1143
Eco88I	CYCGRG	2 cut(s)	124, 917
EcoNI	CCTNNNNNAGG	1 cut(s)	943
EcoO109I	RGGNCCY	1 cut(s)	873
EcoT14I	CCWWGG	2 cut(s)	399, 1112
ErhI	CCWWGG	2 cut(s)	399, 1112
FaeI	CATG	7 cut(s)	378, 505, 740, 791, 1032, 1222, 1262
FaqI	GGGAC	1 cut(s)	859
FatI	CATG	7 cut(s)	374, 501, 736, 787, 1028, 1218, 1258
FauNDI	CATATG	2 cut(s)	454, 565
FblI	GTMKAC	1 cut(s)	733
Fnu4HI	GCNGC	3 cut(s)	230, 590, 707
FokI	GGATG	3 cut(s)	71, 80, 1262
Fsp4HI	GCNGC	3 cut(s)	230, 590, 707
FspBI	CTAG	5 cut(s)	170, 602, 669, 744, 1241
GluI	GCNGC	3 cut(s)	230, 590, 707
HaeIII	GGCC	2 cut(s)	405, 938
HapII	CCGG	1 cut(s)	253
Hin1I	GRCGYC	1 cut(s)	626
Hin1II	CATG	7 cut(s)	378, 505, 740, 791, 1032, 1222, 1262
HinfI	GANTC	6 cut(s)	238, 353, 381, 395, 466, 1117
HpaII	CCGG	1 cut(s)	253
Hpy166II	GTNNAC	2 cut(s)	8, 734
Hpy188I	TCNGA	6 cut(s)	36, 43, 386, 663, 961, 1137
Hpy8I	GTNNAC	2 cut(s)	8, 734
HpyAV	CCTTC	5 cut(s)	110, 939, 1158, 1218, 1247
HpyCH4III	ACNGT	4 cut(s)	683, 991, 1036, 1182
HpyCH4IV	ACGT	3 cut(s)	17, 626, 855
HpyF10VI	GCNNNNNNNGC	2 cut(s)	367, 1058
HpyF3I	CTNAG	7 cut(s)	40, 332, 489, 556, 869, 1009, 1152
HpySE526I	ACGT	3 cut(s)	17, 626, 855
Hsp92I	GRCGYC	1 cut(s)	626
Hsp92II	CATG	7 cut(s)	378, 505, 740, 791, 1032, 1222, 1262
Kzo9I	GATC	4 cut(s)	36, 541, 547, 1132
LguI	GCTCTTC	1 cut(s)	474
LmnI	GCTCC	4 cut(s)	287, 422, 838, 1190
Lsp1109I	GCAGC	2 cut(s)	601, 693
LweI	GCATC	4 cut(s)	183, 261, 571, 730
MaeI	CTAG	5 cut(s)	170, 602, 669, 744, 1241
MaeII	ACGT	3 cut(s)	17, 626, 855
MaeIII	GTNAC	2 cut(s)	492, 746
MalI	GATC	4 cut(s)	38, 543, 549, 1134
MboI	GATC	4 cut(s)	36, 541, 547, 1132
MflI	RGATCY	2 cut(s)	541, 547
MhlI	GDGCHC	1 cut(s)	31
MluCI	AATT	8 cut(s)	48, 182, 620, 810, 829, 902, 1056, 1267
MlyI	GAGTC	3 cut(s)	232, 347, 1126
MmeI	TCCRAC	2 cut(s)	999, 1018
MnlI	CCTC	9 cut(s)	18, 107, 324, 331, 444, 563, 709, 887, 964
MseI	TTAA	3 cut(s)	53, 192, 905
MslI	CAYNNNNRTG	1 cut(s)	474
MspI	CCGG	1 cut(s)	253
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	2 cut(s)	367, 1058
NdeI	CATATG	2 cut(s)	454, 565
NdeII	GATC	4 cut(s)	36, 541, 547, 1132
NlaIII	CATG	7 cut(s)	378, 505, 740, 791, 1032, 1222, 1262
NlaIV	GGNNCC	5 cut(s)	289, 312, 424, 840, 875
NmuCI	GTSAC	1 cut(s)	746
NspV	TTCGAA	1 cut(s)	115
PaeR7I	CTCGAG	1 cut(s)	124
PaqCI	CACCTGC	1 cut(s)	219
PciSI	GCTCTTC	1 cut(s)	474
PfeI	GAWTC	3 cut(s)	381, 395, 466
PkrI	GCNGC	3 cut(s)	231, 591, 708
PleI	GAGTC	3 cut(s)	232, 347, 1125
PpsI	GAGTC	3 cut(s)	232, 347, 1125
PpuMI	RGGWCCY	1 cut(s)	873
Psp1406I	AACGTT	1 cut(s)	855
Psp5II	RGGWCCY	1 cut(s)	873
PspN4I	GGNNCC	5 cut(s)	289, 312, 424, 840, 875
PspPI	GGNCC	2 cut(s)	403, 873
PspPPI	RGGWCCY	1 cut(s)	873
PstI	CTGCAG	1 cut(s)	216
PsuI	RGATCY	2 cut(s)	541, 547
RsaI	GTAC	3 cut(s)	87, 913, 1230
RsaNI	GTAC	3 cut(s)	86, 912, 1229
RseI	CAYNNNNRTG	1 cut(s)	474
SapI	GCTCTTC	1 cut(s)	474
SaqAI	TTAA	3 cut(s)	53, 192, 905
SatI	GCNGC	3 cut(s)	230, 590, 707
Sau3AI	GATC	4 cut(s)	36, 541, 547, 1132
Sau96I	GGNCC	2 cut(s)	403, 873
ScaI	AGTACT	1 cut(s)	913
SchI	GAGTC	3 cut(s)	232, 347, 1126
SduI	GDGCHC	1 cut(s)	31
SfaNI	GCATC	4 cut(s)	183, 261, 571, 730
SfcI	CTRYAG	2 cut(s)	212, 999
Sfr274I	CTCGAG	1 cut(s)	124
SfuI	TTCGAA	1 cut(s)	115
SinI	GGWCC	1 cut(s)	873
SlaI	CTCGAG	1 cut(s)	124
SmiMI	CAYNNNNRTG	1 cut(s)	474
SmlI	CTYRAG	2 cut(s)	124, 435
SmoI	CTYRAG	2 cut(s)	124, 435
Sse9I	AATT	8 cut(s)	48, 182, 620, 810, 829, 902, 1056, 1267
SsiI	CCGC	1 cut(s)	230
SspMI	CTAG	5 cut(s)	170, 602, 669, 744, 1241
StyI	CCWWGG	2 cut(s)	399, 1112
TaaI	ACNGT	4 cut(s)	683, 991, 1036, 1182
TaiI	ACGT	3 cut(s)	20, 629, 858
TaqI	TCGA	4 cut(s)	115, 125, 808, 943
TasI	AATT	8 cut(s)	48, 182, 620, 810, 829, 902, 1056, 1267
TatI	WGTACW	3 cut(s)	85, 911, 1228
TauI	GCSGC	1 cut(s)	232
TfiI	GAWTC	3 cut(s)	381, 395, 466
Tru1I	TTAA	3 cut(s)	53, 192, 905
Tru9I	TTAA	3 cut(s)	53, 192, 905
TscAI	CASTG	1 cut(s)	1039
TseFI	GTSAC	1 cut(s)	746
TseI	GCWGC	2 cut(s)	589, 706
Tsp45I	GTSAC	1 cut(s)	746
TspDTI	ATGAA	6 cut(s)	75, 174, 441, 492, 1094, 1266
TspGWI	ACGGA	1 cut(s)	998
TspRI	CASTG	1 cut(s)	1039
VpaK11BI	GGWCC	1 cut(s)	873
XagI	CCTNNNNNAGG	1 cut(s)	943
XapI	RAATTY	3 cut(s)	48, 182, 829
XbaI	TCTAGA	1 cut(s)	1240
XhoI	CTCGAG	1 cut(s)	124
XmiI	GTMKAC	1 cut(s)	733
XspI	CTAG	5 cut(s)	170, 602, 669, 744, 1241
ZraI	GACGTC	1 cut(s)	627
ZrmI	AGTACT	1 cut(s)	913

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.