Rroxscaffold_2G00080120

Sister chromatid cohesion 1 protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
2990249 .. 2991583
1335 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00080120.1

Sequence Viewer

Length: 594 bp
ATGTCAGTGGGGGAAATTGTACTTTCATTTGACGGGATGGAATTGGATATGGAGTTAAGGACGTCGAGGATTGGAGCTAACCCAGAAGTAAACATGGAGAATCCTCAAGAGAGTAGGAAAAGAGGAAAAAGGTCTGAACCATTTGGTGAAGATCACGAAACCAATGGGGAGCAAATAAACGCTCCTGCTGTAGTCCAATCTGTTGATGGAATTCAAGAAGAAGCAAGCATGGAACTTCCTGTCATGTTACATCATCTAGTGAAAGTCACCACATTATTCGAGAGGAGATTATCATGCAATCAGAAAACCAGATGTGTCCAGTTACAAGAGAGAAGACCACAATCTAAGCAACTTGGAAGCCGACAGGGGAAACCTGACAAGTTGTACATACACCTGCTCAAGAAGAGAACTGATAAGTCTTGTGACTTAAAAGAAACCTCAAAAAAACCTGTTTGTTCATATGAGGAAGAGAATCATAAGGATGGAGAGCCAACAAAGTTACAGGACACGATTCCACCAGATAATCTGAAATGTCAAATTACTGCTGGAAAAGATTCAGAGGCTTTACGTAAAAATATATCATTTCCTAAATGA

Protein Analysis

197

Amino Acids

22.39

Weight (kDa)

6.97

Isoelectric Point (pI)

62.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 402
AatII GACGTC 1 cut(s) 65
Acc36I ACCTGC 1 cut(s) 402
AcsI RAATTY 1 cut(s) 210
AcyI GRCGYC 1 cut(s) 62
AfaI GTAC 2 cut(s) 21, 386
AgsI TTSAA 1 cut(s) 215
AluBI AGCT 1 cut(s) 77
AluI AGCT 1 cut(s) 77
ApoI RAATTY 1 cut(s) 210
Asp700I GAANNNNTTC 1 cut(s) 553
AsuHPI GGTGA 2 cut(s) 158, 259
BbsI GAAGAC 1 cut(s) 340
BccI CCATC 3 cut(s) 31, 200, 476
BfaI CTAG 1 cut(s) 257
BfmI CTRYAG 1 cut(s) 189
BfuAI ACCTGC 1 cut(s) 402
BpiI GAAGAC 1 cut(s) 340
BpuEI CTTGAG 2 cut(s) 90, 383
BsaAI YACGTR 1 cut(s) 569
BsaHI GRCGYC 1 cut(s) 62
Bse1I ACTGG 1 cut(s) 319
BseGI GGATG 2 cut(s) 42, 487
BseNI ACTGG 1 cut(s) 319
BseRI GAGGAG 1 cut(s) 298
Bsp1407I TGTACA 1 cut(s) 384
Bsp143I GATC 1 cut(s) 151
BspMI ACCTGC 1 cut(s) 402
BsrGI TGTACA 1 cut(s) 384
BsrI ACTGG 1 cut(s) 319
BssMI GATC 1 cut(s) 151
BssNI GRCGYC 1 cut(s) 62
Bst6I CTCTTC 2 cut(s) 398, 462
BstACI GRCGYC 1 cut(s) 62
BstAUI TGTACA 1 cut(s) 384
BstBAI YACGTR 1 cut(s) 569
BstC8I GCNNGC 1 cut(s) 226
BstDEI CTNAG 1 cut(s) 345
BstF5I GGATG 2 cut(s) 42, 487
BstKTI GATC 1 cut(s) 154
BstMBI GATC 1 cut(s) 151
BstSFI CTRYAG 1 cut(s) 189
BstSNI TACGTA 1 cut(s) 569
BstV2I GAAGAC 1 cut(s) 340
BtsCI GGATG 2 cut(s) 42, 487
BtsIMutI CAGTG 1 cut(s) 12
BveI ACCTGC 1 cut(s) 402
Cac8I GCNNGC 1 cut(s) 226
Csp6I GTAC 2 cut(s) 20, 385
CviAII CATG 4 cut(s) 94, 229, 244, 294
CviJI RGCY 4 cut(s) 77, 360, 490, 563
CviKI_1 RGCY 4 cut(s) 77, 360, 490, 563
CviQI GTAC 2 cut(s) 20, 385
DdeI CTNAG 1 cut(s) 345
DpnI GATC 1 cut(s) 153
DpnII GATC 1 cut(s) 151
Eam1104I CTCTTC 2 cut(s) 398, 462
EarI CTCTTC 2 cut(s) 398, 462
Eco105I TACGTA 1 cut(s) 569
EcoRI GAATTC 1 cut(s) 210
FaeI CATG 4 cut(s) 97, 232, 247, 297
FatI CATG 4 cut(s) 93, 228, 243, 293
FauNDI CATATG 1 cut(s) 460
FokI GGATG 2 cut(s) 49, 494
FspBI CTAG 1 cut(s) 257
Hin1I GRCGYC 1 cut(s) 62
Hin1II CATG 4 cut(s) 97, 232, 247, 297
HinfI GANTC 4 cut(s) 100, 472, 511, 554
HphI GGTGA 2 cut(s) 158, 259
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 4 cut(s) 136, 303, 528, 559
Hpy188III TCNNGA 5 cut(s) 107, 155, 215, 280, 400
Hpy8I GTNNAC 1 cut(s) 91
Hpy99I CGWCG 1 cut(s) 67
HpyCH4IV ACGT 2 cut(s) 62, 568
HpyCH4V TGCA 1 cut(s) 297
HpyF3I CTNAG 1 cut(s) 345
HpySE526I ACGT 2 cut(s) 62, 568
Hsp92I GRCGYC 1 cut(s) 62
Hsp92II CATG 4 cut(s) 97, 232, 247, 297
Kzo9I GATC 1 cut(s) 151
LmnI GCTCC 3 cut(s) 74, 169, 187
MaeI CTAG 1 cut(s) 257
MaeII ACGT 2 cut(s) 62, 568
MaeIII GTNAC 5 cut(s) 246, 265, 321, 422, 498
MalI GATC 1 cut(s) 153
MboI GATC 1 cut(s) 151
MboII GAAGA 5 cut(s) 161, 230, 345, 415, 479
MluCI AATT 4 cut(s) 15, 41, 210, 537
MnlI CCTC 7 cut(s) 60, 114, 116, 276, 448, 457, 553
MroXI GAANNNNTTC 1 cut(s) 553
MseI TTAA 2 cut(s) 56, 428
MslI CAYNNNNRTG 1 cut(s) 480
NdeI CATATG 1 cut(s) 460
NdeII GATC 1 cut(s) 151
NlaIII CATG 4 cut(s) 97, 232, 247, 297
NmuCI GTSAC 2 cut(s) 265, 422
PaqCI CACCTGC 1 cut(s) 402
PdmI GAANNNNTTC 1 cut(s) 553
PfeI GAWTC 4 cut(s) 100, 472, 511, 554
Ppu21I YACGTR 1 cut(s) 569
RsaI GTAC 2 cut(s) 21, 386
RsaNI GTAC 2 cut(s) 20, 385
RseI CAYNNNNRTG 1 cut(s) 480
SaqAI TTAA 2 cut(s) 56, 428
Sau3AI GATC 1 cut(s) 151
SetI ASST 8 cut(s) 65, 79, 134, 376, 396, 440, 451, 571
SfcI CTRYAG 1 cut(s) 189
SmiMI CAYNNNNRTG 1 cut(s) 480
SmlI CTYRAG 2 cut(s) 105, 398
SmoI CTYRAG 2 cut(s) 105, 398
SnaBI TACGTA 1 cut(s) 569
Sse9I AATT 4 cut(s) 15, 41, 210, 537
SspMI CTAG 1 cut(s) 257
TaiI ACGT 2 cut(s) 65, 571
TaqI TCGA 2 cut(s) 65, 279
TasI AATT 4 cut(s) 15, 41, 210, 537
TatI WGTACW 2 cut(s) 19, 384
TfiI GAWTC 4 cut(s) 100, 472, 511, 554
Tru1I TTAA 2 cut(s) 56, 428
Tru9I TTAA 2 cut(s) 56, 428
TscAI CASTG 1 cut(s) 12
TseFI GTSAC 2 cut(s) 265, 422
Tsp45I GTSAC 2 cut(s) 265, 422
TspDTI ATGAA 2 cut(s) 15, 447
TspRI CASTG 1 cut(s) 12
XapI RAATTY 1 cut(s) 210
XcmI CCANNNNNNNNNTGG 1 cut(s) 203
XmnI GAANNNNTTC 1 cut(s) 553
XspI CTAG 1 cut(s) 257
ZraI GACGTC 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.