Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000681

Physical Location & Seq

Genomic Coordinates Forward (+)

85584558 .. 85586625

Gene Structure 2068 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53935

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGAATAATATATATAGATGCTGCAATATGAAGCTGAATTTTGCGAAGGAGTTAATCCTGAACTCGGTAAGAACTCAAGGATGGGTTTTCAGTGAGAACCAGGTGGCGAGGTACTTGCACAGGCACTTTACAGTTTGCAACAGTTGTAGAGAGGAAGAAGTGAACTTGTTGGAGGTTGCAGAACGAAGAACCAAGAAAGAAAGTGCAATGCTATTCTATGAGACACTGGTGATGAAAACTAGAGGGTTTGTGGATGTGAAGCGAGCTGATCCCTACAGCGACATTCTATTCTGGAAACGTCCCAAATGGGAGCAAATGTGGGGAGATGATACAGCCCATAGAGTCAATTCTGAAAATATGTCCCTATGGCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009987 GO:0016043 GO:0022402 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

124

Amino Acids

14.99

Weight (kDa)

8.98

Isoelectric Point (pI)

39.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad21_Rec8	PF04824	52 - 97	1.3e-11	Conserved region of Rad21 / Rec8 like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840
fragaria_vesca	FvH4_6g53040 FvH4_6g53040 FvH4_6g53050 FvH4_6g53050
malus_domestica	MD09G1015100.v1.1 MD09G1015200.v1.1 MD17G1015200.v1.1
prunus_persica	Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1
pyrus_communis	pycom111g01230 pycom17g01230 pycom17g01240
rosa_chinensis	RchiOBHm_Chr2g0146031 RchiOBHm_Chr2g0172041 RchiOBHm_Chr2g0172061 RchiOBHm_Chr2g0172121 RchiOBHm_Chr2g0172131 RchiOBHm_Chr2g0172161 RchiOBHm_Chr2g0173841 RchiOBHm_Chr2g0174821 RchiOBHm_Chr2g0174831
rosa_laevigata	RLG00000022078 RLG00000022079 RLG00000022228 RLG00000022298 RLG00000022299 RLG00000032768
rosa_multiflora	Rmu_co8137076.1_g000001 Rmu_sc0001716.1_g000038 Rmu_sc0003188.1_g000021 Rmu_sc0015734.1_g000001 Rmu_sc0038259.1_g000001 Rmu_sc0038259.1_g000002 Rmu_sc0040737.1_g000001 Rmu_sc0041600.1_g000001 Rmu_ssc0000252.1_g000045
rosa_roxburghii	Rroxscaffold_2G00077660 Rroxscaffold_2G00080120 Rroxscaffold_2G00080130 Rroxscaffold_2G00080290
rosa_rugosa	Rorug02G0579500 Rorug02G0579600
rosa_samantha	Rh2AG632100 Rh2AG632200 Rh2AG656700 Rh2AG656800 Rh2AG660800 Rh2AG660900 Rh2BG645600 Rh2BG645700 Rh2BG667700 Rh2BG667800 Rh2BG672200 Rh2BG672300 Rh2CG627800 Rh2CG627900 Rh2CG635000 Rh2CG635100 Rh2DG658600 Rh2DG678300 Rh2DG685300 Rh2DG685400 Rh6AG066100 Rh6BG058900
rosa_wichuraiana	Rw2G053570 Rw2G054150 Rw2G054160 Rw6G005810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	263
AcsI	RAATTY	1 cut(s)	37
AfaI	GTAC	1 cut(s)	113
AfiI	CCNNNNNNNGG	1 cut(s)	64
AjnI	CCWGG	1 cut(s)	99
AluBI	AGCT	2 cut(s)	34, 266
AluI	AGCT	2 cut(s)	34, 266
Alw26I	GTCTC	1 cut(s)	215
AlwI	GGATC	1 cut(s)	263
ApeKI	GCWGC	1 cut(s)	21
ApoI	RAATTY	1 cut(s)	37
AsuHPI	GGTGA	1 cut(s)	241
BbvI	GCAGC	1 cut(s)	8
BccI	CCATC	1 cut(s)	75
BcgI	CGANNNNNNTGC	2 cut(s)	97, 131
BciT130I	CCWGG	1 cut(s)	101
BcoDI	GTCTC	1 cut(s)	215
BfaI	CTAG	1 cut(s)	240
BfmI	CTRYAG	1 cut(s)	274
BisI	GCNGC	1 cut(s)	22
BlsI	GCNGC	1 cut(s)	23
Bme1390I	CCNGG	1 cut(s)	101
BmrFI	CCNGG	1 cut(s)	101
BmsI	GCATC	1 cut(s)	8
BpuEI	CTTGAG	1 cut(s)	60
BsaXI	ACNNNNNCTCC	2 cut(s)	302, 332
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
Bse1I	ACTGG	1 cut(s)	231
Bse3DI	GCAATG	1 cut(s)	213
BseBI	CCWGG	1 cut(s)	101
BseGI	GGATG	2 cut(s)	86, 259
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseMI	GCAATG	1 cut(s)	213
BseNI	ACTGG	1 cut(s)	231
BseXI	GCAGC	1 cut(s)	8
BslFI	GGGAC	2 cut(s)	285, 346
BslI	CCNNNNNNNGG	1 cut(s)	64
BsmAI	GTCTC	1 cut(s)	215
BsmFI	GGGAC	2 cut(s)	285, 346
Bsp143I	GATC	1 cut(s)	268
BspPI	GGATC	1 cut(s)	263
BsrDI	GCAATG	1 cut(s)	213
BsrI	ACTGG	1 cut(s)	231
BssMI	GATC	1 cut(s)	268
Bst2UI	CCWGG	1 cut(s)	101
Bst4CI	ACNGT	2 cut(s)	133, 143
BstC8I	GCNNGC	1 cut(s)	264
BstF5I	GGATG	2 cut(s)	86, 259
BstKTI	GATC	1 cut(s)	271
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	1 cut(s)	268
BstNI	CCWGG	1 cut(s)	101
BstSCI	CCNGG	1 cut(s)	99
BstSFI	CTRYAG	1 cut(s)	274
BstV1I	GCAGC	1 cut(s)	8
BtsCI	GGATG	2 cut(s)	86, 259
BtsIMutI	CAGTG	2 cut(s)	97, 224
Cac8I	GCNNGC	1 cut(s)	264
CsiI	ACCWGGT	1 cut(s)	99
Csp6I	GTAC	1 cut(s)	112
CviJI	RGCY	3 cut(s)	34, 266, 335
CviKI_1	RGCY	3 cut(s)	34, 266, 335
CviQI	GTAC	1 cut(s)	112
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
EcoRII	CCWGG	1 cut(s)	99
FaiI	YATR	8 cut(s)	11, 13, 15, 29, 219, 339, 359, 367
FaqI	GGGAC	2 cut(s)	285, 346
Fnu4HI	GCNGC	1 cut(s)	22
FokI	GGATG	2 cut(s)	93, 266
Fsp4HI	GCNGC	1 cut(s)	22
FspBI	CTAG	1 cut(s)	240
GluI	GCNGC	1 cut(s)	22
HinfI	GANTC	1 cut(s)	342
HphI	GGTGA	1 cut(s)	241
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	1 cut(s)	352
Hpy188III	TCNNGA	2 cut(s)	58, 292
Hpy8I	GTNNAC	1 cut(s)	163
HpyAV	CCTTC	1 cut(s)	40
HpyCH4III	ACNGT	2 cut(s)	133, 143
HpyCH4IV	ACGT	1 cut(s)	298
HpyCH4V	TGCA	5 cut(s)	24, 118, 138, 179, 206
HpySE526I	ACGT	1 cut(s)	298
Kzo9I	GATC	1 cut(s)	268
LmnI	GCTCC	1 cut(s)	310
LpnPI	CCDG	6 cut(s)	71, 86, 106, 113, 212, 277
Lsp1109I	GCAGC	1 cut(s)	8
LweI	GCATC	1 cut(s)	8
MabI	ACCWGGT	1 cut(s)	99
MaeI	CTAG	1 cut(s)	240
MaeII	ACGT	1 cut(s)	298
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MboII	GAAGA	2 cut(s)	167, 198
MluCI	AATT	2 cut(s)	37, 346
MlyI	GAGTC	1 cut(s)	351
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	4 cut(s)	102, 145, 166, 236
MseI	TTAA	1 cut(s)	53
MspR9I	CCNGG	1 cut(s)	101
MvaI	CCWGG	1 cut(s)	101
NdeII	GATC	1 cut(s)	268
PkrI	GCNGC	1 cut(s)	23
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
Psp6I	CCWGG	1 cut(s)	99
PspGI	CCWGG	1 cut(s)	99
RsaI	GTAC	1 cut(s)	113
RsaNI	GTAC	1 cut(s)	112
SaqAI	TTAA	1 cut(s)	53
SatI	GCNGC	1 cut(s)	22
Sau3AI	GATC	1 cut(s)	268
SchI	GAGTC	1 cut(s)	351
ScrFI	CCNGG	1 cut(s)	101
SetI	ASST	6 cut(s)	36, 105, 113, 177, 268, 301
SexAI	ACCWGGT	1 cut(s)	99
SfaNI	GCATC	1 cut(s)	8
SfcI	CTRYAG	1 cut(s)	274
SmlI	CTYRAG	1 cut(s)	75
SmoI	CTYRAG	1 cut(s)	75
Sse9I	AATT	2 cut(s)	37, 346
SspMI	CTAG	1 cut(s)	240
StyD4I	CCNGG	1 cut(s)	99
TaaI	ACNGT	2 cut(s)	133, 143
TaiI	ACGT	1 cut(s)	301
TasI	AATT	2 cut(s)	37, 346
Tru1I	TTAA	1 cut(s)	53
Tru9I	TTAA	1 cut(s)	53
TscAI	CASTG	2 cut(s)	97, 231
TseI	GCWGC	1 cut(s)	21
TspDTI	ATGAA	3 cut(s)	17, 44, 248
TspRI	CASTG	2 cut(s)	97, 231
XapI	RAATTY	1 cut(s)	37
XspI	CTAG	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.