Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000681

Physical Location & Seq

Genomic Coordinates Reverse (-)

3213826 .. 3215861

Gene Structure 2036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00080290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGATTGCACCAGATACCATAAAAAGTATTCTGGAAGAAGATCCAGATCCCCTCTCAGTTGCATATGATGGCAGTCCTGATGCCAAGCAGCCATATAATCTAGACGTTTCGCAAGAGCTTAGCTCCCTCTTATGCAAAAGGAAATTTAGGAAATTAAAGAGTACTCCCGAGAAGTTAGATTTGTTGGCCTGTCGAAGGACTGGTATATCAGAGCAAATAGAGGTTGTAAATACGGAAACTGTTGAACCTACAGAAGACTTAGATGTGTTGGAATATCCATGCACTGTTGGATTAGAACAAGCAGAAATTGCACCAGACACACCTGTTCTTCGCTCAAAATCAATCAAATCATTTCATAGTCCAAGGAGTCCTGAAGTTGCTGATCTGAATGTAGTAAGACCTGAGACATCTGGAAGGATAGAAAAAGAACCGTCTATGGGAGCAGAGCAAACTTTCCCTTCTGGAAGCATGGAAGAAGTGATGAAAACTAGAGGGTTTGTGGATGTGAAGCGAGCTGATCGCTATTCTATTCTGGAAACGTCCCAAATGGGAGCAAATGTGGGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009987 GO:0016043 GO:0022402 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

189

Amino Acids

20.94

Weight (kDa)

4.81

Isoelectric Point (pI)

60.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840
fragaria_vesca	FvH4_6g53040 FvH4_6g53040 FvH4_6g53050 FvH4_6g53050
malus_domestica	MD09G1015100.v1.1 MD09G1015200.v1.1 MD17G1015200.v1.1
prunus_persica	Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1
pyrus_communis	pycom111g01230 pycom17g01230 pycom17g01240
rosa_chinensis	RchiOBHm_Chr2g0146031 RchiOBHm_Chr2g0172041 RchiOBHm_Chr2g0172061 RchiOBHm_Chr2g0172121 RchiOBHm_Chr2g0172131 RchiOBHm_Chr2g0172161 RchiOBHm_Chr2g0173841 RchiOBHm_Chr2g0174821 RchiOBHm_Chr2g0174831
rosa_laevigata	RLG00000022078 RLG00000022079 RLG00000022228 RLG00000022298 RLG00000022299 RLG00000032768
rosa_multiflora	Rmu_co8137076.1_g000001 Rmu_sc0001716.1_g000038 Rmu_sc0003188.1_g000021 Rmu_sc0015734.1_g000001 Rmu_sc0038259.1_g000001 Rmu_sc0038259.1_g000002 Rmu_sc0040737.1_g000001 Rmu_sc0041600.1_g000001 Rmu_ssc0000252.1_g000045
rosa_roxburghii	Rroxscaffold_2G00077660 Rroxscaffold_2G00080120 Rroxscaffold_2G00080130 Rroxscaffold_2G00080290
rosa_rugosa	Rorug02G0579500 Rorug02G0579600
rosa_samantha	Rh2AG632100 Rh2AG632200 Rh2AG656700 Rh2AG656800 Rh2AG660800 Rh2AG660900 Rh2BG645600 Rh2BG645700 Rh2BG667700 Rh2BG667800 Rh2BG672200 Rh2BG672300 Rh2CG627800 Rh2CG627900 Rh2CG635000 Rh2CG635100 Rh2DG658600 Rh2DG678300 Rh2DG685300 Rh2DG685400 Rh6AG066100 Rh6BG058900
rosa_wichuraiana	Rw2G053570 Rw2G054150 Rw2G054160 Rw6G005810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	35, 41
AcsI	RAATTY	1 cut(s)	143
AcuI	CTGAAG	1 cut(s)	393
AfaI	GTAC	1 cut(s)	163
AfiI	CCNNNNNNNGG	2 cut(s)	195, 437
AgsI	TTSAA	1 cut(s)	245
AluBI	AGCT	3 cut(s)	118, 123, 515
AluI	AGCT	3 cut(s)	118, 123, 515
Alw26I	GTCTC	1 cut(s)	398
AlwI	GGATC	2 cut(s)	35, 41
Ama87I	CYCGRG	1 cut(s)	167
AoxI	GGCC	1 cut(s)	186
ApeKI	GCWGC	1 cut(s)	88
ApoI	RAATTY	1 cut(s)	143
AvaI	CYCGRG	1 cut(s)	167
BbsI	GAAGAC	1 cut(s)	261
BbvI	GCAGC	1 cut(s)	100
BccI	CCATC	1 cut(s)	62
BcoDI	GTCTC	1 cut(s)	398
BfaI	CTAG	2 cut(s)	101, 489
BfmI	CTRYAG	1 cut(s)	249
BisI	GCNGC	1 cut(s)	89
BlpI	GCTNAGC	1 cut(s)	119
BlsI	GCNGC	1 cut(s)	90
BmcAI	AGTACT	1 cut(s)	163
BmeT110I	CYCGRG	1 cut(s)	167
BmsI	GCATC	1 cut(s)	70
BpiI	GAAGAC	1 cut(s)	261
BplI	GAGNNNNNCTC	2 cut(s)	107, 139
Bpu1102I	GCTNAGC	1 cut(s)	119
BsaBI	GATNNNNATC	1 cut(s)	45
BsaJI	CCNNGG	1 cut(s)	362
BsaXI	ACNNNNNCTCC	1 cut(s)	543
Bsc4I	CCNNNNNNNGG	2 cut(s)	195, 437
Bse1I	ACTGG	1 cut(s)	205
Bse8I	GATNNNNATC	1 cut(s)	45
BseDI	CCNNGG	1 cut(s)	362
BseGI	GGATG	1 cut(s)	508
BseJI	GATNNNNATC	1 cut(s)	45
BseLI	CCNNNNNNNGG	2 cut(s)	195, 437
BseMII	CTCAG	2 cut(s)	69, 393
BseNI	ACTGG	1 cut(s)	205
BseXI	GCAGC	1 cut(s)	100
BshFI	GGCC	1 cut(s)	188
BsiHKCI	CYCGRG	1 cut(s)	167
BslFI	GGGAC	1 cut(s)	526
BslI	CCNNNNNNNGG	2 cut(s)	195, 437
BsmAI	GTCTC	1 cut(s)	398
BsmFI	GGGAC	1 cut(s)	526
BsnI	GGCC	1 cut(s)	188
BsoBI	CYCGRG	1 cut(s)	167
Bsp143I	GATC	4 cut(s)	40, 46, 382, 517
Bsp1720I	GCTNAGC	1 cut(s)	119
BspANI	GGCC	1 cut(s)	188
BspCNI	CTCAG	2 cut(s)	68, 394
BspPI	GGATC	2 cut(s)	35, 41
BsrI	ACTGG	1 cut(s)	205
BssECI	CCNNGG	1 cut(s)	362
BssMI	GATC	4 cut(s)	40, 46, 382, 517
BssT1I	CCWWGG	1 cut(s)	362
Bst4CI	ACNGT	3 cut(s)	241, 286, 432
BstAPI	GCANNNNNTGC	1 cut(s)	308
BstC8I	GCNNGC	1 cut(s)	513
BstDEI	CTNAG	4 cut(s)	55, 119, 259, 402
BstENI	CCTNNNNNAGG	1 cut(s)	193
BstF5I	GGATG	1 cut(s)	508
BstKTI	GATC	4 cut(s)	43, 49, 385, 520
BstMAI	GTCTC	1 cut(s)	398
BstMBI	GATC	4 cut(s)	40, 46, 382, 517
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstSFI	CTRYAG	1 cut(s)	249
BstV1I	GCAGC	1 cut(s)	100
BstV2I	GAAGAC	1 cut(s)	261
BstX2I	RGATCY	2 cut(s)	40, 46
BstYI	RGATCY	2 cut(s)	40, 46
BsuRI	GGCC	1 cut(s)	188
BtsCI	GGATG	1 cut(s)	508
BtsIMutI	CAGTG	1 cut(s)	282
Cac8I	GCNNGC	1 cut(s)	513
Csp6I	GTAC	1 cut(s)	162
CviAII	CATG	2 cut(s)	279, 469
CviJI	RGCY	5 cut(s)	91, 118, 123, 188, 515
CviKI_1	RGCY	5 cut(s)	91, 118, 123, 188, 515
CviQI	GTAC	1 cut(s)	162
DdeI	CTNAG	4 cut(s)	55, 119, 259, 402
DpnI	GATC	4 cut(s)	42, 48, 384, 519
DpnII	GATC	4 cut(s)	40, 46, 382, 517
Eco130I	CCWWGG	1 cut(s)	362
Eco57I	CTGAAG	1 cut(s)	393
Eco88I	CYCGRG	1 cut(s)	167
EcoNI	CCTNNNNNAGG	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	362
ErhI	CCWWGG	1 cut(s)	362
FaeI	CATG	2 cut(s)	282, 472
FaqI	GGGAC	1 cut(s)	526
FatI	CATG	2 cut(s)	278, 468
FauNDI	CATATG	1 cut(s)	64
Fnu4HI	GCNGC	1 cut(s)	89
FokI	GGATG	1 cut(s)	515
Fsp4HI	GCNGC	1 cut(s)	89
FspBI	CTAG	2 cut(s)	101, 489
GluI	GCNGC	1 cut(s)	89
HaeIII	GGCC	1 cut(s)	188
Hin1II	CATG	2 cut(s)	282, 472
HinfI	GANTC	1 cut(s)	367
Hpy188I	TCNGA	2 cut(s)	211, 387
Hpy188III	TCNNGA	9 cut(s)	32, 44, 77, 101, 167, 371, 411, 462, 533
HpyAV	CCTTC	3 cut(s)	189, 408, 468
HpyCH4III	ACNGT	3 cut(s)	241, 286, 432
HpyCH4IV	ACGT	2 cut(s)	105, 539
HpyCH4V	TGCA	5 cut(s)	8, 62, 135, 282, 311
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
HpyF3I	CTNAG	4 cut(s)	55, 119, 259, 402
HpySE526I	ACGT	2 cut(s)	105, 539
Hsp92II	CATG	2 cut(s)	282, 472
Kzo9I	GATC	4 cut(s)	40, 46, 382, 517
LmnI	GCTCC	3 cut(s)	128, 440, 551
Lsp1109I	GCAGC	1 cut(s)	100
LweI	GCATC	1 cut(s)	70
MaeI	CTAG	2 cut(s)	101, 489
MaeII	ACGT	2 cut(s)	105, 539
MalI	GATC	4 cut(s)	42, 48, 384, 519
MboI	GATC	4 cut(s)	40, 46, 382, 517
MboII	GAAGA	5 cut(s)	47, 50, 266, 320, 485
MflI	RGATCY	2 cut(s)	40, 46
MluCI	AATT	3 cut(s)	143, 152, 306
MlyI	GAGTC	1 cut(s)	376
MmeI	TCCRAC	2 cut(s)	249, 268
MnlI	CCTC	4 cut(s)	62, 137, 214, 485
MseI	TTAA	1 cut(s)	155
MwoI	GCNNNNNNNGC	1 cut(s)	308
NdeI	CATATG	1 cut(s)	64
NdeII	GATC	4 cut(s)	40, 46, 382, 517
NlaIII	CATG	2 cut(s)	282, 472
PkrI	GCNGC	1 cut(s)	90
PleI	GAGTC	1 cut(s)	375
PpsI	GAGTC	1 cut(s)	375
PsuI	RGATCY	2 cut(s)	40, 46
RsaI	GTAC	1 cut(s)	163
RsaNI	GTAC	1 cut(s)	162
SaqAI	TTAA	1 cut(s)	155
SatI	GCNGC	1 cut(s)	89
Sau3AI	GATC	4 cut(s)	40, 46, 382, 517
ScaI	AGTACT	1 cut(s)	163
SchI	GAGTC	1 cut(s)	376
SetI	ASST	9 cut(s)	108, 120, 125, 225, 250, 325, 403, 517, 542
SfaNI	GCATC	1 cut(s)	70
SfcI	CTRYAG	1 cut(s)	249
Sse9I	AATT	3 cut(s)	143, 152, 306
SspMI	CTAG	2 cut(s)	101, 489
StyI	CCWWGG	1 cut(s)	362
TaaI	ACNGT	3 cut(s)	241, 286, 432
TaiI	ACGT	2 cut(s)	108, 542
TaqI	TCGA	1 cut(s)	193
TasI	AATT	3 cut(s)	143, 152, 306
TatI	WGTACW	1 cut(s)	161
Tru1I	TTAA	1 cut(s)	155
Tru9I	TTAA	1 cut(s)	155
TscAI	CASTG	1 cut(s)	289
TseI	GCWGC	1 cut(s)	88
TspDTI	ATGAA	2 cut(s)	344, 497
TspGWI	ACGGA	1 cut(s)	248
TspRI	CASTG	1 cut(s)	289
XagI	CCTNNNNNAGG	1 cut(s)	193
XapI	RAATTY	1 cut(s)	143
XbaI	TCTAGA	1 cut(s)	100
XspI	CTAG	2 cut(s)	101, 489
ZrmI	AGTACT	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.