Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000681

Physical Location & Seq

Genomic Coordinates Forward (+)

85589955 .. 85593591

Gene Structure 3637 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53936

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGATTGGGATGTCATCGCATATAGGGTACTGGCCGGCCTACCTTCTTCTTGGTGTTGTTCGGATATACTCGAAAAAAGTTGAATACCTTTTTGATGTCTGCCATGAGGTGCTAACTGACATCAACAAGTTTGTCGTTAGCACAAAAGAGAAGGGAGACACAGATACGTTTCTTGCGCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009987 GO:0016043 GO:0022402 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

60

Amino Acids

6.84

Weight (kDa)

6.01

Isoelectric Point (pI)

36.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad21_Rec8_N	PF04825	14 - 51	1.5e-08	N terminus of Rad21 / Rec8 like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840
fragaria_vesca	FvH4_6g53040 FvH4_6g53040 FvH4_6g53050 FvH4_6g53050
malus_domestica	MD09G1015100.v1.1 MD09G1015200.v1.1 MD17G1015200.v1.1
prunus_persica	Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1
pyrus_communis	pycom111g01230 pycom17g01230 pycom17g01240
rosa_chinensis	RchiOBHm_Chr2g0146031 RchiOBHm_Chr2g0172041 RchiOBHm_Chr2g0172061 RchiOBHm_Chr2g0172121 RchiOBHm_Chr2g0172131 RchiOBHm_Chr2g0172161 RchiOBHm_Chr2g0173841 RchiOBHm_Chr2g0174821 RchiOBHm_Chr2g0174831
rosa_laevigata	RLG00000022078 RLG00000022079 RLG00000022228 RLG00000022298 RLG00000022299 RLG00000032768
rosa_multiflora	Rmu_co8137076.1_g000001 Rmu_sc0001716.1_g000038 Rmu_sc0003188.1_g000021 Rmu_sc0015734.1_g000001 Rmu_sc0038259.1_g000001 Rmu_sc0038259.1_g000002 Rmu_sc0040737.1_g000001 Rmu_sc0041600.1_g000001 Rmu_ssc0000252.1_g000045
rosa_roxburghii	Rroxscaffold_2G00077660 Rroxscaffold_2G00080120 Rroxscaffold_2G00080130 Rroxscaffold_2G00080290
rosa_rugosa	Rorug02G0579500 Rorug02G0579600
rosa_samantha	Rh2AG632100 Rh2AG632200 Rh2AG656700 Rh2AG656800 Rh2AG660800 Rh2AG660900 Rh2BG645600 Rh2BG645700 Rh2BG667700 Rh2BG667800 Rh2BG672200 Rh2BG672300 Rh2CG627800 Rh2CG627900 Rh2CG635000 Rh2CG635100 Rh2DG658600 Rh2DG678300 Rh2DG685300 Rh2DG685400 Rh6AG066100 Rh6BG058900
rosa_wichuraiana	Rw2G053570 Rw2G054150 Rw2G054160 Rw6G005810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	32
AfaI	GTAC	1 cut(s)	29
AgsI	TTSAA	1 cut(s)	83
Alw26I	GTCTC	1 cut(s)	150
AoxI	GGCC	2 cut(s)	32, 36
AspLEI	GCGC	1 cut(s)	178
BcoDI	GTCTC	1 cut(s)	150
Bse118I	RCCGGY	1 cut(s)	34
Bse1I	ACTGG	1 cut(s)	35
BseGI	GGATG	1 cut(s)	15
BseNI	ACTGG	1 cut(s)	35
BshFI	GGCC	2 cut(s)	34, 38
BsiSI	CCGG	1 cut(s)	35
BsmAI	GTCTC	1 cut(s)	150
BsnI	GGCC	2 cut(s)	34, 38
BspANI	GGCC	2 cut(s)	34, 38
BsrFI	RCCGGY	1 cut(s)	34
BsrI	ACTGG	1 cut(s)	35
BssAI	RCCGGY	1 cut(s)	34
BstC8I	GCNNGC	1 cut(s)	36
BstDEI	CTNAG	1 cut(s)	180
BstF5I	GGATG	1 cut(s)	15
BstHHI	GCGC	1 cut(s)	178
BstMAI	GTCTC	1 cut(s)	150
BsuRI	GGCC	2 cut(s)	34, 38
BtsCI	GGATG	1 cut(s)	15
Cac8I	GCNNGC	1 cut(s)	36
CfoI	GCGC	1 cut(s)	178
Cfr10I	RCCGGY	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	28
CviAII	CATG	1 cut(s)	104
CviJI	RGCY	2 cut(s)	34, 38
CviKI_1	RGCY	2 cut(s)	34, 38
CviQI	GTAC	1 cut(s)	28
DdeI	CTNAG	1 cut(s)	180
EaeI	YGGCCR	1 cut(s)	32
FaeI	CATG	1 cut(s)	107
FaiI	YATR	4 cut(s)	21, 23, 67, 105
FatI	CATG	1 cut(s)	103
FokI	GGATG	1 cut(s)	22
FseI	GGCCGGCC	1 cut(s)	38
GlaI	GCGC	1 cut(s)	177
HaeIII	GGCC	2 cut(s)	34, 38
HapII	CCGG	1 cut(s)	35
HhaI	GCGC	1 cut(s)	178
Hin1II	CATG	1 cut(s)	107
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HpaII	CCGG	1 cut(s)	35
Hpy188I	TCNGA	1 cut(s)	63
HpyAV	CCTTC	2 cut(s)	53, 145
HpyCH4IV	ACGT	1 cut(s)	167
HpyF3I	CTNAG	1 cut(s)	180
HpySE526I	ACGT	1 cut(s)	167
Hsp92II	CATG	1 cut(s)	107
HspAI	GCGC	1 cut(s)	176
KroI	GCCGGC	1 cut(s)	34
KroNI	GCCGGC	1 cut(s)	36
LpnPI	CCDG	2 cut(s)	16, 48
MaeII	ACGT	1 cut(s)	167
MboII	GAAGA	1 cut(s)	38
MnlI	CCTC	1 cut(s)	100
MroNI	GCCGGC	1 cut(s)	34
MspI	CCGG	1 cut(s)	35
NaeI	GCCGGC	1 cut(s)	36
NgoMIV	GCCGGC	1 cut(s)	34
NlaIII	CATG	1 cut(s)	107
PdiI	GCCGGC	1 cut(s)	36
RigI	GGCCGGCC	1 cut(s)	38
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
SetI	ASST	4 cut(s)	45, 90, 111, 170
SgeI	CNNG	6 cut(s)	43, 47, 62, 82, 116, 139
TaiI	ACGT	1 cut(s)	170
TaqI	TCGA	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.