Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001716.1

Orthogroup ID

OG0000681

Physical Location & Seq

Genomic Coordinates Forward (+)

146321 .. 149923

Gene Structure 3603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001716.1_g000038.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

atgtttcccttcggaacccagttgagctttgatgcaactggtgaagacccggaagaacctatgaagatagaggctagagaaatgctgtgtgcggcttatcactctgttatcacaccggataggtttgaacttgatgcatatgatatggggagccttgaagatgtcagtggatgttactacactaaaattgatggctgttccaagaccagcttccaagaagtcggctcggattctcaggaaagaaaatgtgtgtttgatgatatagtagtactgcctaatgtgactggtatatcagagcaaatagaggttgtagatacggaaactgttgaacctccagaagacttaaatgtgttggaatatccatgtactgttggattagaacatgctgaaattgcaccagacacacctgttcttcgctcaaaatcaatcaaatcatttcatagtccaaggattcctgaagttcctgatatggatctagtaagacctgagacatctggaaggatagaaaaagaaccatttttgggagcagagcaaactttcccctctggaagtgttagaagaagtagcatgacttcaatttttgagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009987 GO:0016043 GO:0022402 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

195

Amino Acids

21.68

Weight (kDa)

4.33

Isoelectric Point (pI)

53.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840 AT5G40840
fragaria_vesca	FvH4_6g53040 FvH4_6g53040 FvH4_6g53050 FvH4_6g53050
malus_domestica	MD09G1015100.v1.1 MD09G1015200.v1.1 MD17G1015200.v1.1
prunus_persica	Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1 Prupe.3G302600_v2.0.a1
pyrus_communis	pycom111g01230 pycom17g01230 pycom17g01240
rosa_chinensis	RchiOBHm_Chr2g0146031 RchiOBHm_Chr2g0172041 RchiOBHm_Chr2g0172061 RchiOBHm_Chr2g0172121 RchiOBHm_Chr2g0172131 RchiOBHm_Chr2g0172161 RchiOBHm_Chr2g0173841 RchiOBHm_Chr2g0174821 RchiOBHm_Chr2g0174831
rosa_laevigata	RLG00000022078 RLG00000022079 RLG00000022228 RLG00000022298 RLG00000022299 RLG00000032768
rosa_multiflora	Rmu_co8137076.1_g000001 Rmu_sc0001716.1_g000038 Rmu_sc0003188.1_g000021 Rmu_sc0015734.1_g000001 Rmu_sc0038259.1_g000001 Rmu_sc0038259.1_g000002 Rmu_sc0040737.1_g000001 Rmu_sc0041600.1_g000001 Rmu_ssc0000252.1_g000045
rosa_roxburghii	Rroxscaffold_2G00077660 Rroxscaffold_2G00080120 Rroxscaffold_2G00080130 Rroxscaffold_2G00080290
rosa_rugosa	Rorug02G0579500 Rorug02G0579600
rosa_samantha	Rh2AG632100 Rh2AG632200 Rh2AG656700 Rh2AG656800 Rh2AG660800 Rh2AG660900 Rh2BG645600 Rh2BG645700 Rh2BG667700 Rh2BG667800 Rh2BG672200 Rh2BG672300 Rh2CG627800 Rh2CG627900 Rh2CG635000 Rh2CG635100 Rh2DG658600 Rh2DG678300 Rh2DG685300 Rh2DG685400 Rh6AG066100 Rh6BG058900
rosa_wichuraiana	Rw2G053570 Rw2G054150 Rw2G054160 Rw6G005810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	92
AclWI	GGATC	1 cut(s)	480
AcuI	CTGAAG	1 cut(s)	477
AfaI	GTAC	2 cut(s)	270, 367
AfiI	CCNNNNNNNGG	1 cut(s)	521
AgsI	TTSAA	4 cut(s)	128, 158, 329, 576
AjuI	GAANNNNNNNTTGG	2 cut(s)	194, 226
AluBI	AGCT	2 cut(s)	27, 210
AluI	AGCT	2 cut(s)	27, 210
Alw26I	GTCTC	1 cut(s)	482
AlwI	GGATC	1 cut(s)	480
AsuC2I	CCSGG	1 cut(s)	50
AsuHPI	GGTGA	1 cut(s)	53
BarI	GAAGNNNNNNTAC	2 cut(s)	556, 588
BbsI	GAAGAC	2 cut(s)	51, 345
BccI	CCATC	1 cut(s)	185
BcnI	CCSGG	1 cut(s)	50
BcoDI	GTCTC	1 cut(s)	482
BfaI	CTAG	2 cut(s)	75, 476
BisI	GCNGC	1 cut(s)	93
BlsI	GCNGC	1 cut(s)	94
BmcAI	AGTACT	1 cut(s)	270
Bme1390I	CCNGG	1 cut(s)	50
BmiI	GGNNCC	2 cut(s)	16, 152
BmrFI	CCNGG	1 cut(s)	50
BmrI	ACTGGG	1 cut(s)	13
BmsI	GCATC	2 cut(s)	22, 124
BmuI	ACTGGG	1 cut(s)	13
BpiI	GAAGAC	2 cut(s)	51, 345
BpmI	CTGGAG	1 cut(s)	318
BpuMI	CCSGG	1 cut(s)	50
BsaBI	GATNNNNATC	1 cut(s)	471
BsaJI	CCNNGG	1 cut(s)	446
BsaWI	WCCGGW	1 cut(s)	115
Bsc4I	CCNNNNNNNGG	1 cut(s)	521
Bse1I	ACTGG	3 cut(s)	19, 43, 289
Bse8I	GATNNNNATC	1 cut(s)	471
BseDI	CCNNGG	1 cut(s)	446
BseGI	GGATG	1 cut(s)	176
BseJI	GATNNNNATC	1 cut(s)	471
BseLI	CCNNNNNNNGG	1 cut(s)	521
BseMII	CTCAG	2 cut(s)	248, 477
BseNI	ACTGG	3 cut(s)	19, 43, 289
BsiSI	CCGG	2 cut(s)	50, 116
BslI	CCNNNNNNNGG	1 cut(s)	521
BsmAI	GTCTC	1 cut(s)	482
Bsp143I	GATC	1 cut(s)	472
BspACI	CCGC	1 cut(s)	92
BspCNI	CTCAG	2 cut(s)	247, 478
BspLI	GGNNCC	2 cut(s)	16, 152
BspPI	GGATC	1 cut(s)	480
BsrI	ACTGG	3 cut(s)	19, 43, 289
BssECI	CCNNGG	1 cut(s)	446
BssMI	GATC	1 cut(s)	472
BssT1I	CCWWGG	1 cut(s)	446
Bst4CI	ACNGT	2 cut(s)	325, 370
BstDEI	CTNAG	2 cut(s)	234, 486
BstF5I	GGATG	1 cut(s)	176
BstKTI	GATC	1 cut(s)	475
BstMAI	GTCTC	1 cut(s)	482
BstMBI	GATC	1 cut(s)	472
BstMWI	GCNNNNNNNGC	1 cut(s)	392
BstNSI	RCATGY	1 cut(s)	386
BstSCI	CCNGG	1 cut(s)	48
BstV2I	GAAGAC	2 cut(s)	51, 345
BstX2I	RGATCY	1 cut(s)	472
BstYI	RGATCY	1 cut(s)	472
BtsCI	GGATG	1 cut(s)	176
BtsIMutI	CAGTG	1 cut(s)	172
Csp6I	GTAC	2 cut(s)	269, 366
CviAII	CATG	3 cut(s)	363, 383, 568
CviJI	RGCY	7 cut(s)	27, 74, 95, 153, 195, 210, 225
CviKI_1	RGCY	7 cut(s)	27, 74, 95, 153, 195, 210, 225
CviQI	GTAC	2 cut(s)	269, 366
DdeI	CTNAG	2 cut(s)	234, 486
DpnI	GATC	1 cut(s)	474
DpnII	GATC	1 cut(s)	472
Eco130I	CCWWGG	1 cut(s)	446
Eco57I	CTGAAG	1 cut(s)	477
EcoT14I	CCWWGG	1 cut(s)	446
EcoT22I	ATGCAT	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	446
FaeI	CATG	3 cut(s)	366, 386, 571
FalI	AAGNNNNNCTT	2 cut(s)	194, 226
FatI	CATG	3 cut(s)	362, 382, 567
FauNDI	CATATG	1 cut(s)	139
Fnu4HI	GCNGC	1 cut(s)	93
FokI	GGATG	1 cut(s)	183
Fsp4HI	GCNGC	1 cut(s)	93
FspBI	CTAG	2 cut(s)	75, 476
GluI	GCNGC	1 cut(s)	93
GsuI	CTGGAG	1 cut(s)	318
HapII	CCGG	2 cut(s)	50, 116
Hin1II	CATG	3 cut(s)	366, 386, 571
HinfI	GANTC	2 cut(s)	230, 451
HpaII	CCGG	2 cut(s)	50, 116
HphI	GGTGA	1 cut(s)	53
Hpy188I	TCNGA	3 cut(s)	14, 229, 295
Hpy188III	TCNNGA	6 cut(s)	236, 335, 455, 464, 495, 546
HpyAV	CCTTC	2 cut(s)	19, 492
HpyCH4III	ACNGT	2 cut(s)	325, 370
HpyCH4V	TGCA	3 cut(s)	35, 137, 395
HpyF10VI	GCNNNNNNNGC	1 cut(s)	392
HpyF3I	CTNAG	2 cut(s)	234, 486
Hsp92II	CATG	3 cut(s)	366, 386, 571
Kzo9I	GATC	1 cut(s)	472
LmnI	GCTCC	2 cut(s)	150, 524
LweI	GCATC	2 cut(s)	22, 124
MaeI	CTAG	2 cut(s)	75, 476
MaeIII	GTNAC	2 cut(s)	173, 280
MalI	GATC	1 cut(s)	474
MboI	GATC	1 cut(s)	472
MboII	GAAGA	7 cut(s)	56, 65, 76, 170, 350, 404, 570
MflI	RGATCY	1 cut(s)	472
MluCI	AATT	3 cut(s)	186, 390, 576
MmeI	TCCRAC	2 cut(s)	333, 352
MnlI	CCTC	4 cut(s)	64, 298, 342, 553
Mph1103I	ATGCAT	1 cut(s)	139
MseI	TTAA	1 cut(s)	344
MspI	CCGG	2 cut(s)	50, 116
MspR9I	CCNGG	1 cut(s)	50
MwoI	GCNNNNNNNGC	1 cut(s)	392
NciI	CCSGG	1 cut(s)	50
NdeI	CATATG	1 cut(s)	139
NdeII	GATC	1 cut(s)	472
NlaIII	CATG	3 cut(s)	366, 386, 571
NlaIV	GGNNCC	2 cut(s)	16, 152
NmuCI	GTSAC	1 cut(s)	280
NsiI	ATGCAT	1 cut(s)	139
NspI	RCATGY	1 cut(s)	386
PfeI	GAWTC	2 cut(s)	230, 451
PkrI	GCNGC	1 cut(s)	94
PspN4I	GGNNCC	2 cut(s)	16, 152
PsuI	RGATCY	1 cut(s)	472
RsaI	GTAC	2 cut(s)	270, 367
RsaNI	GTAC	2 cut(s)	269, 366
SaqAI	TTAA	1 cut(s)	344
SatI	GCNGC	1 cut(s)	93
Sau3AI	GATC	1 cut(s)	472
ScaI	AGTACT	1 cut(s)	270
ScrFI	CCNGG	1 cut(s)	50
SetI	ASST	8 cut(s)	29, 61, 125, 212, 309, 334, 409, 487
SfaNI	GCATC	2 cut(s)	22, 124
Sse9I	AATT	3 cut(s)	186, 390, 576
SsiI	CCGC	1 cut(s)	92
SspMI	CTAG	2 cut(s)	75, 476
StyD4I	CCNGG	1 cut(s)	48
StyI	CCWWGG	1 cut(s)	446
TaaI	ACNGT	2 cut(s)	325, 370
TasI	AATT	3 cut(s)	186, 390, 576
TatI	WGTACW	2 cut(s)	268, 365
TauI	GCSGC	1 cut(s)	95
TfiI	GAWTC	2 cut(s)	230, 451
Tru1I	TTAA	1 cut(s)	344
Tru9I	TTAA	1 cut(s)	344
TscAI	CASTG	1 cut(s)	172
TseFI	GTSAC	1 cut(s)	280
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	2 cut(s)	77, 428
TspGWI	ACGGA	1 cut(s)	332
TspRI	CASTG	1 cut(s)	172
XceI	RCATGY	1 cut(s)	386
XspI	CTAG	2 cut(s)	75, 476
ZrmI	AGTACT	1 cut(s)	270
Zsp2I	ATGCAT	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.