Prupe.4G057900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000917
Physical Location & Seq
Forward (+)
2765616 .. 2768197
2582 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G057900.1

Sequence Viewer

Length: 360 bp
ATGTACAACAACGTGCTAACGGGACTTAAATTCATCGCATCAGGTTATGCTGGCAGACAATACTTCCATTCATCTCAACATCTACAAATCCTTATCAGGGAGGGCCTAAGCACAGGCGGGCAAGGCGGTTGCCTAGGGCCTCCAATTTTTATAAACCATATGTATGTTGCTTCTTTTTTTTTTTTTTTTGAGAAATTCTATGATTGCATTCATAATTCAGCCAAAAAAGCCACTAGTCACAAAGGGCCAACACAAACTAGCCACAAAAGGGTCATTACAATAACGGAGCAATCTAATATCAAAATTAAGAAAATCAGGTATGTCTCCACTAACGATCAGACAAGATCGAAGAAACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.52

Weight (kDa)

9.96

Isoelectric Point (pI)

48.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 152
AciI CCGC 2 cut(s) 117, 126
AcsI RAATTY 2 cut(s) 29, 194
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 2 cut(s) 97, 268
AhlI ACTAGT 1 cut(s) 233
Alw26I GTCTC 1 cut(s) 328
AoxI GGCC 3 cut(s) 103, 137, 245
ApoI RAATTY 2 cut(s) 29, 194
AspA2I CCTAGG 1 cut(s) 133
AspS9I GGNCC 3 cut(s) 103, 137, 245
AvrII CCTAGG 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 328
BcuI ACTAGT 1 cut(s) 233
BfaI CTAG 4 cut(s) 134, 234, 258, 358
BlnI CCTAGG 1 cut(s) 133
BmgT120I GGNCC 3 cut(s) 103, 137, 245
BmsI GCATC 1 cut(s) 47
Bpu10I CCTNAGC 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 133
Bsc4I CCNNNNNNNGG 2 cut(s) 97, 268
BseDI CCNNGG 1 cut(s) 133
BseLI CCNNNNNNNGG 2 cut(s) 97, 268
BshFI GGCC 3 cut(s) 105, 139, 247
BslFI GGGAC 1 cut(s) 36
BslI CCNNNNNNNGG 2 cut(s) 97, 268
BsmAI GTCTC 1 cut(s) 328
BsmFI GGGAC 1 cut(s) 36
BsmI GAATGC 1 cut(s) 207
BsnI GGCC 3 cut(s) 105, 139, 247
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 2 cut(s) 334, 344
BspACI CCGC 2 cut(s) 117, 126
BspANI GGCC 3 cut(s) 105, 139, 247
BsrGI TGTACA 1 cut(s) 3
BssECI CCNNGG 1 cut(s) 133
BssMI GATC 2 cut(s) 334, 344
BssT1I CCWWGG 1 cut(s) 133
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 2 cut(s) 52, 119
BstDEI CTNAG 1 cut(s) 107
BstKTI GATC 2 cut(s) 337, 347
BstMAI GTCTC 1 cut(s) 328
BstMBI GATC 2 cut(s) 334, 344
BstMWI GCNNNNNNNGC 2 cut(s) 123, 227
BsuRI GGCC 3 cut(s) 105, 139, 247
BtgZI GCGATG 1 cut(s) 19
Cac8I GCNNGC 2 cut(s) 52, 119
Cfr13I GGNCC 3 cut(s) 103, 137, 245
Csp6I GTAC 1 cut(s) 4
CviJI RGCY 6 cut(s) 105, 139, 221, 230, 247, 261
CviKI_1 RGCY 6 cut(s) 105, 139, 221, 230, 247, 261
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 1 cut(s) 107
DpnI GATC 2 cut(s) 336, 346
DpnII GATC 2 cut(s) 334, 344
Eco130I CCWWGG 1 cut(s) 133
EcoO109I RGGNCCY 2 cut(s) 103, 137
EcoT14I CCWWGG 1 cut(s) 133
ErhI CCWWGG 1 cut(s) 133
FaiI YATR 8 cut(s) 48, 152, 159, 161, 165, 201, 213, 321
FaqI GGGAC 1 cut(s) 36
FauI CCCGC 1 cut(s) 110
FauNDI CATATG 1 cut(s) 159
FspBI CTAG 4 cut(s) 134, 234, 258, 358
HaeIII GGCC 3 cut(s) 105, 139, 247
Hpy188I TCNGA 1 cut(s) 339
HpyCH4IV ACGT 1 cut(s) 12
HpyCH4V TGCA 1 cut(s) 207
HpyF10VI GCNNNNNNNGC 2 cut(s) 123, 227
HpyF3I CTNAG 1 cut(s) 107
HpySE526I ACGT 1 cut(s) 12
Kzo9I GATC 2 cut(s) 334, 344
LmnI GCTCC 1 cut(s) 286
LpnPI CCDG 5 cut(s) 27, 36, 82, 99, 301
LweI GCATC 1 cut(s) 47
MaeI CTAG 4 cut(s) 134, 234, 258, 358
MaeII ACGT 1 cut(s) 12
MaeIII GTNAC 1 cut(s) 236
MalI GATC 2 cut(s) 336, 346
MboI GATC 2 cut(s) 334, 344
MluCI AATT 5 cut(s) 29, 144, 194, 214, 303
MnlI CCTC 2 cut(s) 94, 150
MseI TTAA 2 cut(s) 27, 306
MslI CAYNNNNRTG 1 cut(s) 162
Mva1269I GAATGC 1 cut(s) 207
MwoI GCNNNNNNNGC 2 cut(s) 123, 227
NdeI CATATG 1 cut(s) 159
NdeII GATC 2 cut(s) 334, 344
NmuCI GTSAC 1 cut(s) 236
PctI GAATGC 1 cut(s) 207
PsiI TTATAA 1 cut(s) 152
PspPI GGNCC 3 cut(s) 103, 137, 245
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 162
SaqAI TTAA 2 cut(s) 27, 306
Sau3AI GATC 2 cut(s) 334, 344
Sau96I GGNCC 3 cut(s) 103, 137, 245
SetI ASST 3 cut(s) 15, 46, 320
SfaNI GCATC 1 cut(s) 47
SmiMI CAYNNNNRTG 1 cut(s) 162
SpeI ACTAGT 1 cut(s) 233
Sse9I AATT 5 cut(s) 29, 144, 194, 214, 303
SsiI CCGC 2 cut(s) 117, 126
SspMI CTAG 4 cut(s) 134, 234, 258, 358
StyI CCWWGG 1 cut(s) 133
TaiI ACGT 1 cut(s) 15
TaqI TCGA 1 cut(s) 347
TasI AATT 5 cut(s) 29, 144, 194, 214, 303
TatI WGTACW 1 cut(s) 3
Tru1I TTAA 2 cut(s) 27, 306
Tru9I TTAA 2 cut(s) 27, 306
TseFI GTSAC 1 cut(s) 236
Tsp45I GTSAC 1 cut(s) 236
TspDTI ATGAA 3 cut(s) 22, 60, 200
TspGWI ACGGA 1 cut(s) 299
XapI RAATTY 2 cut(s) 29, 194
XmaJI CCTAGG 1 cut(s) 133
XspI CTAG 4 cut(s) 134, 234, 258, 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.