Encoded by
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 376 |
| Acc36I | ACCTGC | 1 cut(s) | 366 |
| Acc65I | GGTACC | 1 cut(s) | 1857 |
| AccB1I | GGYRCC | 1 cut(s) | 1857 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 295 |
| AccI | GTMKAC | 2 cut(s) | 844, 1396 |
| AccII | CGCG | 1 cut(s) | 373 |
| AccIII | TCCGGA | 1 cut(s) | 1549 |
| AciI | CCGC | 4 cut(s) | 217, 267, 1387, 1465 |
| AclWI | GGATC | 6 cut(s) | 20, 63, 915, 1575, 1680, 1824 |
| AcoI | YGGCCR | 3 cut(s) | 762, 800, 892 |
| AcsI | RAATTY | 2 cut(s) | 1161, 1627 |
| AcuI | CTGAAG | 3 cut(s) | 645, 1437, 1736 |
| AfaI | GTAC | 5 cut(s) | 327, 703, 724, 1596, 1859 |
| AfeI | AGCGCT | 1 cut(s) | 102 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 295, 901, 1374, 1531 |
| AflII | CTTAAG | 1 cut(s) | 965 |
| AflIII | ACRYGT | 1 cut(s) | 1591 |
| AjiI | CACGTC | 1 cut(s) | 848 |
| AleI | CACNNNNGTG | 1 cut(s) | 412 |
| Alw26I | GTCTC | 7 cut(s) | 239, 384, 528, 623, 760, 1187, 1676 |
| AlwI | GGATC | 6 cut(s) | 20, 63, 915, 1575, 1680, 1824 |
| Ama87I | CYCGRG | 2 cut(s) | 344, 664 |
| Aor13HI | TCCGGA | 1 cut(s) | 1549 |
| Aor51HI | AGCGCT | 1 cut(s) | 102 |
| AoxI | GGCC | 5 cut(s) | 258, 563, 762, 800, 892 |
| ApeKI | GCWGC | 2 cut(s) | 351, 516 |
| ApoI | RAATTY | 2 cut(s) | 1161, 1627 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 197, 645 |
| Asp718I | GGTACC | 1 cut(s) | 1857 |
| AspLEI | GCGC | 5 cut(s) | 103, 216, 351, 375, 1779 |
| AspS9I | GGNCC | 1 cut(s) | 417 |
| AsuHPI | GGTGA | 8 cut(s) | 143, 202, 256, 333, 399, 647, 1000, 1206 |
| AvaI | CYCGRG | 2 cut(s) | 344, 664 |
| AvaII | GGWCC | 1 cut(s) | 417 |
| AxyI | CCTNAGG | 1 cut(s) | 879 |
| BaeGI | GKGCMC | 1 cut(s) | 242 |
| BaeI | ACNNNNGTAYC | 1 cut(s) | 1849 |
| BalI | TGGCCA | 2 cut(s) | 764, 802 |
| BanI | GGYRCC | 1 cut(s) | 1857 |
| BanII | GRGCYC | 1 cut(s) | 1072 |
| BbsI | GAAGAC | 1 cut(s) | 1836 |
| BbvCI | CCTCAGC | 1 cut(s) | 1373 |
| BbvI | GCAGC | 2 cut(s) | 363, 503 |
| BccI | CCATC | 3 cut(s) | 118, 269, 792 |
| BceAI | ACGGC | 4 cut(s) | 62, 322, 636, 796 |
| BcoDI | GTCTC | 7 cut(s) | 239, 384, 528, 623, 760, 1187, 1676 |
| BfaI | CTAG | 3 cut(s) | 998, 1262, 1586 |
| BfmI | CTRYAG | 2 cut(s) | 705, 1348 |
| BfoI | RGCGCY | 2 cut(s) | 104, 217 |
| BfrI | CTTAAG | 1 cut(s) | 965 |
| BfuAI | ACCTGC | 1 cut(s) | 366 |
| BisI | GCNGC | 4 cut(s) | 217, 352, 517, 1388 |
| BlpI | GCTNAGC | 1 cut(s) | 774 |
| BlsI | GCNGC | 4 cut(s) | 218, 353, 518, 1389 |
| BmcAI | AGTACT | 1 cut(s) | 703 |
| Bme18I | GGWCC | 1 cut(s) | 417 |
| BmeT110I | CYCGRG | 2 cut(s) | 344, 664 |
| BmgBI | CACGTC | 1 cut(s) | 848 |
| BmgT120I | GGNCC | 1 cut(s) | 417 |
| BmiI | GGNNCC | 1 cut(s) | 1859 |
| BmrI | ACTGGG | 1 cut(s) | 184 |
| BmsI | GCATC | 4 cut(s) | 324, 739, 798, 1587 |
| BmuI | ACTGGG | 1 cut(s) | 184 |
| BoxI | GACNNNNGTC | 1 cut(s) | 251 |
| BpiI | GAAGAC | 1 cut(s) | 1836 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 338, 370 |
| BpmI | CTGGAG | 1 cut(s) | 1188 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1373 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 774 |
| BpuEI | CTTGAG | 4 cut(s) | 158, 512, 594, 1607 |
| Bsa29I | ATCGAT | 1 cut(s) | 1819 |
| BsaI | GGTCTC | 3 cut(s) | 239, 384, 760 |
| BsaJI | CCNNGG | 5 cut(s) | 663, 734, 803, 1102, 1530 |
| BsaWI | WCCGGW | 2 cut(s) | 409, 1549 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1186, 1216 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 295, 901, 1374, 1531 |
| Bse1I | ACTGG | 5 cut(s) | 179, 196, 310, 581, 1296 |
| Bse21I | CCTNAGG | 1 cut(s) | 879 |
| Bse3DI | GCAATG | 1 cut(s) | 1275 |
| BseAI | TCCGGA | 1 cut(s) | 1549 |
| BseCI | ATCGAT | 1 cut(s) | 1819 |
| BseDI | CCNNGG | 5 cut(s) | 663, 734, 803, 1102, 1530 |
| BseGI | GGATG | 4 cut(s) | 730, 813, 1578, 1765 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 295, 901, 1374, 1531 |
| BseMI | GCAATG | 1 cut(s) | 1275 |
| BseMII | CTCAG | 5 cut(s) | 870, 1085, 1163, 1364, 1405 |
| BseNI | ACTGG | 5 cut(s) | 179, 196, 310, 581, 1296 |
| BseSI | GKGCMC | 1 cut(s) | 242 |
| BseXI | GCAGC | 2 cut(s) | 363, 503 |
| BseYI | CCCAGC | 1 cut(s) | 1368 |
| BsgI | GTGCAG | 1 cut(s) | 70 |
| Bsh1236I | CGCG | 1 cut(s) | 373 |
| BshFI | GGCC | 5 cut(s) | 260, 565, 764, 802, 894 |
| BshNI | GGYRCC | 1 cut(s) | 1857 |
| BshVI | ATCGAT | 1 cut(s) | 1819 |
| BsiHKCI | CYCGRG | 2 cut(s) | 344, 664 |
| BsiSI | CCGG | 3 cut(s) | 410, 895, 1550 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 295, 901, 1374, 1531 |
| BsmAI | GTCTC | 7 cut(s) | 239, 384, 528, 623, 760, 1187, 1676 |
| BsnI | GGCC | 5 cut(s) | 260, 565, 764, 802, 894 |
| Bso31I | GGTCTC | 3 cut(s) | 239, 384, 760 |
| BsoBI | CYCGRG | 2 cut(s) | 344, 664 |
| Bsp1286I | GDGCHC | 2 cut(s) | 242, 1072 |
| Bsp13I | TCCGGA | 1 cut(s) | 1549 |
| Bsp1407I | TGTACA | 1 cut(s) | 722 |
| Bsp143I | GATC | 9 cut(s) | 25, 55, 228, 907, 1168, 1360, 1567, 1672, 1816 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 774 |
| BspACI | CCGC | 4 cut(s) | 217, 267, 1387, 1465 |
| BspANI | GGCC | 5 cut(s) | 260, 565, 764, 802, 894 |
| BspCNI | CTCAG | 5 cut(s) | 871, 1084, 1164, 1365, 1404 |
| BspDI | ATCGAT | 1 cut(s) | 1819 |
| BspEI | TCCGGA | 1 cut(s) | 1549 |
| BspFNI | CGCG | 1 cut(s) | 373 |
| BspHI | TCATGA | 2 cut(s) | 108, 1801 |
| BspLI | GGNNCC | 1 cut(s) | 1859 |
| BspMAI | CTGCAG | 1 cut(s) | 1352 |
| BspMI | ACCTGC | 1 cut(s) | 366 |
| BspPI | GGATC | 6 cut(s) | 20, 63, 915, 1575, 1680, 1824 |
| BspT107I | GGYRCC | 1 cut(s) | 1857 |
| BspTI | CTTAAG | 1 cut(s) | 965 |
| BspTNI | GGTCTC | 3 cut(s) | 239, 384, 760 |
| BsrDI | GCAATG | 1 cut(s) | 1275 |
| BsrGI | TGTACA | 1 cut(s) | 722 |
| BsrI | ACTGG | 5 cut(s) | 179, 196, 310, 581, 1296 |
| BssECI | CCNNGG | 5 cut(s) | 663, 734, 803, 1102, 1530 |
| BssMI | GATC | 9 cut(s) | 25, 55, 228, 907, 1168, 1360, 1567, 1672, 1816 |
| BssNAI | GTATAC | 1 cut(s) | 1397 |
| BssT1I | CCWWGG | 3 cut(s) | 734, 803, 1530 |
| Bst1107I | GTATAC | 1 cut(s) | 1397 |
| Bst4CI | ACNGT | 6 cut(s) | 727, 919, 939, 1005, 1479, 1799 |
| Bst6I | CTCTTC | 3 cut(s) | 554, 621, 1305 |
| BstAFI | CTTAAG | 1 cut(s) | 965 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1517 |
| BstAUI | TGTACA | 1 cut(s) | 722 |
| BstC8I | GCNNGC | 4 cut(s) | 85, 155, 771, 1180 |
| BstF5I | GGATG | 4 cut(s) | 730, 813, 1578, 1765 |
| BstFNI | CGCG | 1 cut(s) | 373 |
| BstH2I | RGCGCY | 2 cut(s) | 104, 217 |
| BstHHI | GCGC | 5 cut(s) | 103, 216, 351, 375, 1779 |
| BstKTI | GATC | 9 cut(s) | 28, 58, 231, 910, 1171, 1363, 1570, 1675, 1819 |
| BstMAI | GTCTC | 7 cut(s) | 239, 384, 528, 623, 760, 1187, 1676 |
| BstMBI | GATC | 9 cut(s) | 25, 55, 228, 907, 1168, 1360, 1567, 1672, 1816 |
| BstNSI | RCATGY | 5 cut(s) | 286, 773, 855, 1182, 1595 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 251 |
| BstSFI | CTRYAG | 2 cut(s) | 705, 1348 |
| BstSLI | GKGCMC | 1 cut(s) | 242 |
| BstUI | CGCG | 1 cut(s) | 373 |
| BstV1I | GCAGC | 2 cut(s) | 363, 503 |
| BstV2I | GAAGAC | 1 cut(s) | 1836 |
| BstX2I | RGATCY | 3 cut(s) | 25, 907, 1567 |
| BstYI | RGATCY | 3 cut(s) | 25, 907, 1567 |
| BstZ17I | GTATAC | 1 cut(s) | 1397 |
| Bsu15I | ATCGAT | 1 cut(s) | 1819 |
| Bsu36I | CCTNAGG | 1 cut(s) | 879 |
| BsuRI | GGCC | 5 cut(s) | 260, 565, 764, 802, 894 |
| BsuTUI | ATCGAT | 1 cut(s) | 1819 |
| BtrI | CACGTC | 1 cut(s) | 848 |
| BtsCI | GGATG | 4 cut(s) | 730, 813, 1578, 1765 |
| BtsIMutI | CAGTG | 3 cut(s) | 172, 732, 924 |
| BveI | ACCTGC | 1 cut(s) | 366 |
| Cac8I | GCNNGC | 4 cut(s) | 85, 155, 771, 1180 |
| CciI | TCATGA | 2 cut(s) | 108, 1801 |
| CfoI | GCGC | 5 cut(s) | 103, 216, 351, 375, 1779 |
| Cfr13I | GGNCC | 1 cut(s) | 417 |
| ClaI | ATCGAT | 1 cut(s) | 1819 |
| CseI | GACGC | 2 cut(s) | 379, 1700 |
| Csp6I | GTAC | 5 cut(s) | 326, 702, 723, 1595, 1858 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1587, 1622 |
| CviQI | GTAC | 5 cut(s) | 326, 702, 723, 1595, 1858 |
| DpnI | GATC | 9 cut(s) | 27, 57, 230, 909, 1170, 1362, 1569, 1674, 1818 |
| DpnII | GATC | 9 cut(s) | 25, 55, 228, 907, 1168, 1360, 1567, 1672, 1816 |
| DraI | TTTAAA | 1 cut(s) | 1632 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 376 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 376 |
| EaeI | YGGCCR | 3 cut(s) | 762, 800, 892 |
| Eam1104I | CTCTTC | 3 cut(s) | 554, 621, 1305 |
| EarI | CTCTTC | 3 cut(s) | 554, 621, 1305 |
| EciI | GGCGGA | 1 cut(s) | 1454 |
| Eco130I | CCWWGG | 3 cut(s) | 734, 803, 1530 |
| Eco147I | AGGCCT | 1 cut(s) | 565 |
| Eco24I | GRGCYC | 1 cut(s) | 1072 |
| Eco31I | GGTCTC | 3 cut(s) | 239, 384, 760 |
| Eco32I | GATATC | 2 cut(s) | 1110, 1210 |
| Eco47I | GGWCC | 1 cut(s) | 417 |
| Eco47III | AGCGCT | 1 cut(s) | 102 |
| Eco57I | CTGAAG | 3 cut(s) | 645, 1437, 1736 |
| Eco81I | CCTNAGG | 1 cut(s) | 879 |
| Eco88I | CYCGRG | 2 cut(s) | 344, 664 |
| EcoRV | GATATC | 2 cut(s) | 1110, 1210 |
| EcoT14I | CCWWGG | 3 cut(s) | 734, 803, 1530 |
| EcoT22I | ATGCAT | 1 cut(s) | 697 |
| EcoT38I | GRGCYC | 1 cut(s) | 1072 |
| ErhI | CCWWGG | 3 cut(s) | 734, 803, 1530 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 120, 152, 218, 250 |
| FauNDI | CATATG | 1 cut(s) | 747 |
| FblI | GTMKAC | 2 cut(s) | 844, 1396 |
| Fnu4HI | GCNGC | 4 cut(s) | 217, 352, 517, 1388 |
| FokI | GGATG | 4 cut(s) | 717, 820, 1565, 1772 |
| FriOI | GRGCYC | 1 cut(s) | 1072 |
| Fsp4HI | GCNGC | 4 cut(s) | 217, 352, 517, 1388 |
| FspBI | CTAG | 3 cut(s) | 998, 1262, 1586 |
| GlaI | GCGC | 5 cut(s) | 102, 215, 350, 374, 1778 |
| GluI | GCNGC | 4 cut(s) | 217, 352, 517, 1388 |
| GsaI | CCCAGC | 1 cut(s) | 1372 |
| GsuI | CTGGAG | 1 cut(s) | 1188 |
| HaeII | RGCGCY | 2 cut(s) | 104, 217 |
| HaeIII | GGCC | 5 cut(s) | 260, 565, 764, 802, 894 |
| HapII | CCGG | 3 cut(s) | 410, 895, 1550 |
| HgaI | GACGC | 2 cut(s) | 379, 1700 |
| HhaI | GCGC | 5 cut(s) | 103, 216, 351, 375, 1779 |
| Hin6I | GCGC | 5 cut(s) | 101, 214, 349, 373, 1777 |
| HinP1I | GCGC | 5 cut(s) | 101, 214, 349, 373, 1777 |
| HindIII | AAGCTT | 2 cut(s) | 776, 1145 |
| HinfI | GANTC | 7 cut(s) | 359, 394, 545, 673, 791, 991, 1225 |
| HpaII | CCGG | 3 cut(s) | 410, 895, 1550 |
| HphI | GGTGA | 8 cut(s) | 143, 202, 256, 333, 399, 647, 1000, 1206 |
| Hpy166II | GTNNAC | 6 cut(s) | 193, 201, 315, 845, 931, 1397 |
| Hpy188I | TCNGA | 9 cut(s) | 358, 421, 456, 651, 1074, 1103, 1173, 1249, 1716 |
| Hpy8I | GTNNAC | 6 cut(s) | 193, 201, 315, 845, 931, 1397 |
| Hpy99I | CGWCG | 2 cut(s) | 83, 257 |
| HpyAV | CCTTC | 7 cut(s) | 122, 1040, 1140, 1331, 1441, 1531, 1750 |
| HpyCH4III | ACNGT | 6 cut(s) | 727, 919, 939, 1005, 1479, 1799 |
| HpyCH4IV | ACGT | 2 cut(s) | 847, 927 |
| HpyCH4V | TGCA | 6 cut(s) | 87, 695, 730, 851, 1350, 1853 |
| HpySE526I | ACGT | 2 cut(s) | 847, 927 |
| HspAI | GCGC | 5 cut(s) | 101, 214, 349, 373, 1777 |
| Kpn2I | TCCGGA | 1 cut(s) | 1549 |
| KpnI | GGTACC | 1 cut(s) | 1861 |
| Kzo9I | GATC | 9 cut(s) | 25, 55, 228, 907, 1168, 1360, 1567, 1672, 1816 |
| LmnI | GCTCC | 4 cut(s) | 178, 298, 359, 456 |
| Lsp1109I | GCAGC | 2 cut(s) | 363, 503 |
| LweI | GCATC | 4 cut(s) | 324, 739, 798, 1587 |
| MaeI | CTAG | 3 cut(s) | 998, 1262, 1586 |
| MaeII | ACGT | 2 cut(s) | 847, 927 |
| MaeIII | GTNAC | 4 cut(s) | 339, 405, 598, 1253 |
| MalI | GATC | 9 cut(s) | 27, 57, 230, 909, 1170, 1362, 1569, 1674, 1818 |
| MboI | GATC | 9 cut(s) | 25, 55, 228, 907, 1168, 1360, 1567, 1672, 1816 |
| MboII | GAAGA | 8 cut(s) | 446, 571, 638, 1052, 1125, 1292, 1562, 1841 |
| MflI | RGATCY | 3 cut(s) | 25, 907, 1567 |
| MhlI | GDGCHC | 2 cut(s) | 242, 1072 |
| MlsI | TGGCCA | 2 cut(s) | 764, 802 |
| MluNI | TGGCCA | 2 cut(s) | 764, 802 |
| MlyI | GAGTC | 2 cut(s) | 368, 403 |
| Mox20I | TGGCCA | 2 cut(s) | 764, 802 |
| Mph1103I | ATGCAT | 1 cut(s) | 697 |
| MroI | TCCGGA | 1 cut(s) | 1549 |
| MroXI | GAANNNNTTC | 2 cut(s) | 197, 645 |
| MscI | TGGCCA | 2 cut(s) | 764, 802 |
| MseI | TTAA | 3 cut(s) | 506, 966, 1631 |
| MslI | CAYNNNNRTG | 1 cut(s) | 412 |
| Msp20I | TGGCCA | 2 cut(s) | 764, 802 |
| MspA1I | CMGCKG | 2 cut(s) | 331, 1372 |
| MspCI | CTTAAG | 1 cut(s) | 965 |
| MspI | CCGG | 3 cut(s) | 410, 895, 1550 |
| MvnI | CGCG | 1 cut(s) | 373 |
| NdeI | CATATG | 1 cut(s) | 747 |
| NdeII | GATC | 9 cut(s) | 25, 55, 228, 907, 1168, 1360, 1567, 1672, 1816 |
| NlaIV | GGNNCC | 1 cut(s) | 1859 |
| NmeAIII | GCCGAG | 1 cut(s) | 995 |
| NmuCI | GTSAC | 3 cut(s) | 339, 405, 598 |
| NsiI | ATGCAT | 1 cut(s) | 697 |
| NspI | RCATGY | 5 cut(s) | 286, 773, 855, 1182, 1595 |
| OliI | CACNNNNGTG | 1 cut(s) | 412 |
| PaeI | GCATGC | 2 cut(s) | 773, 1182 |
| PagI | TCATGA | 2 cut(s) | 108, 1801 |
| PceI | AGGCCT | 1 cut(s) | 565 |
| PciI | ACATGT | 1 cut(s) | 1591 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1245 |
| PdmI | GAANNNNTTC | 2 cut(s) | 197, 645 |
| PfeI | GAWTC | 5 cut(s) | 545, 673, 791, 991, 1225 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 295 |
| PkrI | GCNGC | 4 cut(s) | 218, 353, 518, 1389 |
| PleI | GAGTC | 2 cut(s) | 367, 402 |
| PpsI | GAGTC | 2 cut(s) | 367, 402 |
| PscI | ACATGT | 1 cut(s) | 1591 |
| PshAI | GACNNNNGTC | 1 cut(s) | 251 |
| PspFI | CCCAGC | 1 cut(s) | 1368 |
| PspN4I | GGNNCC | 1 cut(s) | 1859 |
| PspPI | GGNCC | 1 cut(s) | 417 |
| PstI | CTGCAG | 1 cut(s) | 1352 |
| PsuI | RGATCY | 3 cut(s) | 25, 907, 1567 |
| PvuII | CAGCTG | 2 cut(s) | 331, 1372 |
| RsaI | GTAC | 5 cut(s) | 327, 703, 724, 1596, 1859 |
| RsaNI | GTAC | 5 cut(s) | 326, 702, 723, 1595, 1858 |
| RseI | CAYNNNNRTG | 1 cut(s) | 412 |
| SaqAI | TTAA | 3 cut(s) | 506, 966, 1631 |
| SatI | GCNGC | 4 cut(s) | 217, 352, 517, 1388 |
| Sau3AI | GATC | 9 cut(s) | 25, 55, 228, 907, 1168, 1360, 1567, 1672, 1816 |
| Sau96I | GGNCC | 1 cut(s) | 417 |
| ScaI | AGTACT | 1 cut(s) | 703 |
| SchI | GAGTC | 2 cut(s) | 368, 403 |
| SduI | GDGCHC | 2 cut(s) | 242, 1072 |
| SfaNI | GCATC | 4 cut(s) | 324, 739, 798, 1587 |
| SfcI | CTRYAG | 2 cut(s) | 705, 1348 |
| SinI | GGWCC | 1 cut(s) | 417 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 412 |
| SmlI | CTYRAG | 5 cut(s) | 137, 491, 609, 965, 1622 |
| SmoI | CTYRAG | 5 cut(s) | 137, 491, 609, 965, 1622 |
| SphI | GCATGC | 2 cut(s) | 773, 1182 |
| SseBI | AGGCCT | 1 cut(s) | 565 |
| SsiI | CCGC | 4 cut(s) | 217, 267, 1387, 1465 |
| SspI | AATATT | 1 cut(s) | 534 |
| SspMI | CTAG | 3 cut(s) | 998, 1262, 1586 |
| StuI | AGGCCT | 1 cut(s) | 565 |
| StyI | CCWWGG | 3 cut(s) | 734, 803, 1530 |
| TaaI | ACNGT | 6 cut(s) | 727, 919, 939, 1005, 1479, 1799 |
| TaiI | ACGT | 2 cut(s) | 850, 930 |
| TaqI | TCGA | 7 cut(s) | 222, 255, 432, 789, 1038, 1239, 1819 |
| TatI | WGTACW | 3 cut(s) | 325, 701, 722 |
| TauI | GCSGC | 2 cut(s) | 219, 1390 |
| TfiI | GAWTC | 5 cut(s) | 545, 673, 791, 991, 1225 |
| Tru1I | TTAA | 3 cut(s) | 506, 966, 1631 |
| Tru9I | TTAA | 3 cut(s) | 506, 966, 1631 |
| TscAI | CASTG | 3 cut(s) | 179, 732, 924 |
| TseFI | GTSAC | 3 cut(s) | 339, 405, 598 |
| TseI | GCWGC | 2 cut(s) | 351, 516 |
| Tsp45I | GTSAC | 3 cut(s) | 339, 405, 598 |
| TspDTI | ATGAA | 5 cut(s) | 28, 498, 983, 1059, 1842 |
| TspGWI | ACGGA | 2 cut(s) | 241, 257 |
| TspRI | CASTG | 3 cut(s) | 179, 732, 924 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 295 |
| Vha464I | CTTAAG | 1 cut(s) | 965 |
| VpaK11BI | GGWCC | 1 cut(s) | 417 |
| XapI | RAATTY | 2 cut(s) | 1161, 1627 |
| XceI | RCATGY | 5 cut(s) | 286, 773, 855, 1182, 1595 |
| XmiI | GTMKAC | 2 cut(s) | 844, 1396 |
| XmnI | GAANNNNTTC | 2 cut(s) | 197, 645 |
| XspI | CTAG | 3 cut(s) | 998, 1262, 1586 |
| ZrmI | AGTACT | 1 cut(s) | 703 |
| Zsp2I | ATGCAT | 1 cut(s) | 697 |