Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006226.1

Orthogroup ID

OG0000917

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 4293

Gene Structure 4293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006226.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 881 bp

aggagataggagaagacatctttgcaaaactcttgagaaaggacttgattcaaccagctccaggtcagtccaactgtgaattacttgtgaaaaattgttgtgttcacccttggattcatcgtatgttgatctccttggctagagaggctaagctgttcgacttcgatcccaaatggccaatgatgccatttggttctatatcaacttgtaggcgttcatgtttagtttctaaggagggtaagtcaataactccttatggtgatgatcaattgaaaaatatattgacagtattcaatgtaaacgttaaatatcttgatttgaaaccagaatggctcgacaagttgaagaaggttgaagttcttcactttggacggtggcagagctcccccaaatatcacattgaagtggatcagaaaacatttgatggttcacaagcttcgagccggtgcttggggtcaagcggcagggggacgatgtcatcgtgggtgttagaggcggagggtggtgaactggatgcggccgaagccgcaggatttccagatcttgtggtcgttggcgatttcgatggcaaagatggagtcaggttcgagagtggactcgaggaaggtgaggaggtgatcggcttcaatctccctggttctgaccgctgtgcaaggcgaattgtagtgatcatctatcagggcgggtcgacgtgcccggatcagctagttttggcagggaatccggcggcggtgatggacgggcagaagtatactagggtttctgctcactttgctcaggtttgggcttgggtctttgggcctgggctcaagtttgagttgttgggccctatgttgtgggctagtagggagggtgtcttgccaccctcatttatcacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

292

Amino Acids

32.33

Weight (kDa)

5.64

Isoelectric Point (pI)

41.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000917)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g29201 FvH4_6g29201 FvH4_6g29201
malus_domestica	MD09G1222600.v1.1
prunus_persica	Prupe.3G175600_v2.0.a1 Prupe.3G175600_v2.0.a1 Prupe.3G176100_v2.0.a1 Prupe.4G057900_v2.0.a1
pyrus_communis	pycom808g00780
rosa_chinensis	RchiOBHm_Chr2g0111461 RchiOBHm_Chr2g0112821 RchiOBHm_Chr2g0151861 RchiOBHm_Chr2g0152221
rosa_laevigata	RLG00000018013 RLG00000018014 RLG00000020584 RLG00000020617
rosa_multiflora	Rmu_co8270923.1_g000001 Rmu_sc0001687.1_g000009 Rmu_sc0002351.1_g000014 Rmu_sc0003043.1_g000010 Rmu_sc0004286.1_g000015 Rmu_sc0005294.1_g000017 Rmu_sc0005791.1_g000005 Rmu_sc0006226.1_g000001 Rmu_sc0008578.1_g000006 Rmu_sc0017895.1_g000007 Rmu_sc0023925.1_g000005 Rmu_ssc0000400.1_g000039
rosa_roxburghii	Rroxscaffold_2G00096130 Rroxscaffold_2G00131120 Rroxscaffold_4G00302580 Rroxscaffold_7G00189350
rosa_rugosa	Rorug02G0174500 Rorug02G0182800 Rorug02G0429200 Rorug02G0429600.1 Rorug02G0431300 Rorug02G0431400 Rorug02G0431500
rosa_samantha	Rh2AG227200 Rh2AG237600 Rh2AG490200 Rh2AG490400 Rh2AG492800 Rh2BG239000 Rh2BG250300 Rh2BG502600 Rh2BG505400 Rh2CG230800 Rh2CG241400 Rh2CG476500 Rh2CG476800 Rh2CG479200 Rh2DG234800 Rh2DG245100 Rh2DG513800 Rh2DG516600
rosa_wichuraiana	Rw0G018020 Rw0G020240 Rw2G018600 Rw2G040180 Rw2G040300 Rw2G040500 Rw2G040520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	688, 751
AciI	CCGC	8 cut(s)	461, 496, 517, 527, 645, 683, 727, 730
AclI	AACGTT	1 cut(s)	302
AclWI	GGATC	3 cut(s)	160, 416, 707
AcoI	YGGCCR	2 cut(s)	175, 518
AfiI	CCNNNNNNNGG	2 cut(s)	61, 450
AgsI	TTSAA	8 cut(s)	52, 273, 294, 321, 345, 355, 403, 627
AjiI	CACGTC	1 cut(s)	692
AjnI	CCWGG	3 cut(s)	60, 633, 801
AluBI	AGCT	5 cut(s)	58, 153, 383, 436, 705
AluI	AGCT	5 cut(s)	58, 153, 383, 436, 705
Alw21I	GWGCWC	1 cut(s)	385
AlwI	GGATC	3 cut(s)	160, 416, 707
Ama87I	CYCGRG	1 cut(s)	598
AoxI	GGCC	4 cut(s)	175, 518, 799, 825
ApaI	GGGCCC	1 cut(s)	829
ArsI	GACNNNNNNTTYG	2 cut(s)	563, 595
Asp700I	GAANNNNTTC	1 cut(s)	359
AspS9I	GGNCC	3 cut(s)	799, 825, 826
AsuC2I	CCSGG	1 cut(s)	697
AsuHPI	GGTGA	6 cut(s)	97, 271, 517, 619, 627, 744
AvaI	CYCGRG	1 cut(s)	598
BaeGI	GKGCMC	2 cut(s)	697, 829
BalI	TGGCCA	1 cut(s)	177
BanII	GRGCYC	3 cut(s)	385, 809, 829
BbsI	GAAGAC	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	385
BccI	CCATC	4 cut(s)	418, 559, 568, 729
BciT130I	CCWGG	3 cut(s)	62, 635, 803
BclI	TGATCA	2 cut(s)	264, 668
BcnI	CCSGG	1 cut(s)	697
BfaI	CTAG	4 cut(s)	140, 706, 755, 842
BglII	AGATCT	1 cut(s)	540
BisI	GCNGC	4 cut(s)	462, 518, 527, 728
BlpI	GCTNAGC	1 cut(s)	149
BlsI	GCNGC	4 cut(s)	463, 519, 528, 729
Bme1390I	CCNGG	4 cut(s)	62, 635, 697, 803
BmeT110I	CYCGRG	1 cut(s)	598
BmgBI	CACGTC	1 cut(s)	692
BmgT120I	GGNCC	3 cut(s)	799, 825, 826
BmiI	GGNNCC	1 cut(s)	827
BmrFI	CCNGG	4 cut(s)	62, 635, 697, 803
BmsI	GCATC	2 cut(s)	173, 504
BpiI	GAAGAC	1 cut(s)	20
BpmI	CTGGAG	1 cut(s)	44
Bpu10I	CCTNAGC	1 cut(s)	776
Bpu1102I	GCTNAGC	1 cut(s)	149
BpuEI	CTTGAG	2 cut(s)	54, 793
BpuMI	CCSGG	1 cut(s)	697
BsaJI	CCNNGG	4 cut(s)	109, 134, 633, 802
BsaXI	ACNNNNNCTCC	2 cut(s)	226, 256
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 450
Bse118I	RCCGGY	1 cut(s)	443
Bse1I	ACTGG	1 cut(s)	515
BseBI	CCWGG	3 cut(s)	62, 635, 803
BseDI	CCNNGG	4 cut(s)	109, 134, 633, 802
BseGI	GGATG	1 cut(s)	519
BseLI	CCNNNNNNNGG	2 cut(s)	61, 450
BseMII	CTCAG	1 cut(s)	790
BseNI	ACTGG	1 cut(s)	515
BseRI	GAGGAG	1 cut(s)	625
BseSI	GKGCMC	2 cut(s)	697, 829
BseX3I	CGGCCG	1 cut(s)	518
Bsh1285I	CGRYCG	1 cut(s)	521
BshFI	GGCC	4 cut(s)	177, 520, 801, 827
BsiEI	CGRYCG	1 cut(s)	521
BsiHKAI	GWGCWC	1 cut(s)	385
BsiHKCI	CYCGRG	1 cut(s)	598
BsiSI	CCGG	3 cut(s)	444, 697, 724
BslFI	GGGAC	1 cut(s)	483
BslI	CCNNNNNNNGG	2 cut(s)	61, 450
BsmFI	GGGAC	1 cut(s)	483
BsnI	GGCC	4 cut(s)	177, 520, 801, 827
BsoBI	CYCGRG	1 cut(s)	598
Bsp120I	GGGCCC	1 cut(s)	825
Bsp1286I	GDGCHC	4 cut(s)	385, 697, 809, 829
Bsp143I	GATC	8 cut(s)	128, 165, 264, 408, 540, 617, 668, 699
Bsp1720I	GCTNAGC	1 cut(s)	149
BspACI	CCGC	8 cut(s)	461, 496, 517, 527, 645, 683, 727, 730
BspANI	GGCC	4 cut(s)	177, 520, 801, 827
BspCNI	CTCAG	1 cut(s)	789
BspLI	GGNNCC	1 cut(s)	827
BspPI	GGATC	3 cut(s)	160, 416, 707
BsrFI	RCCGGY	1 cut(s)	443
BsrI	ACTGG	1 cut(s)	515
BssAI	RCCGGY	1 cut(s)	443
BssECI	CCNNGG	4 cut(s)	109, 134, 633, 802
BssMI	GATC	8 cut(s)	128, 165, 264, 408, 540, 617, 668, 699
BssNAI	GTATAC	1 cut(s)	752
BssT1I	CCWWGG	2 cut(s)	109, 134
Bst1107I	GTATAC	1 cut(s)	752
Bst2UI	CCWGG	3 cut(s)	62, 635, 803
Bst4CI	ACNGT	3 cut(s)	76, 288, 374
BstDEI	CTNAG	4 cut(s)	149, 230, 776, 878
BstF5I	GGATG	1 cut(s)	519
BstKTI	GATC	8 cut(s)	131, 168, 267, 411, 543, 620, 671, 702
BstMBI	GATC	8 cut(s)	128, 165, 264, 408, 540, 617, 668, 699
BstMCI	CGRYCG	1 cut(s)	521
BstMWI	GCNNNNNNNGC	5 cut(s)	145, 183, 523, 526, 772
BstNI	CCWGG	3 cut(s)	62, 635, 803
BstSCI	CCNGG	4 cut(s)	60, 633, 695, 801
BstSLI	GKGCMC	2 cut(s)	697, 829
BstV2I	GAAGAC	1 cut(s)	20
BstX2I	RGATCY	1 cut(s)	540
BstYI	RGATCY	1 cut(s)	540
BstZ17I	GTATAC	1 cut(s)	752
BstZI	CGGCCG	1 cut(s)	518
BsuRI	GGCC	4 cut(s)	177, 520, 801, 827
BtrI	CACGTC	1 cut(s)	692
BtsCI	GGATG	1 cut(s)	519
Cfr10I	RCCGGY	1 cut(s)	443
Cfr13I	GGNCC	3 cut(s)	799, 825, 826
CviAII	CATG	1 cut(s)	218
DdeI	CTNAG	4 cut(s)	149, 230, 776, 878
DpnI	GATC	8 cut(s)	130, 167, 266, 410, 542, 619, 670, 701
DpnII	GATC	8 cut(s)	128, 165, 264, 408, 540, 617, 668, 699
EaeI	YGGCCR	2 cut(s)	175, 518
EagI	CGGCCG	1 cut(s)	518
EciI	GGCGGA	1 cut(s)	511
Ecl136II	GAGCTC	1 cut(s)	383
EclXI	CGGCCG	1 cut(s)	518
Eco130I	CCWWGG	2 cut(s)	109, 134
Eco24I	GRGCYC	3 cut(s)	385, 809, 829
Eco52I	CGGCCG	1 cut(s)	518
Eco53kI	GAGCTC	1 cut(s)	383
Eco88I	CYCGRG	1 cut(s)	598
EcoICRI	GAGCTC	1 cut(s)	383
EcoO109I	RGGNCCY	1 cut(s)	826
EcoRII	CCWGG	3 cut(s)	60, 633, 801
EcoT14I	CCWWGG	2 cut(s)	109, 134
EcoT38I	GRGCYC	3 cut(s)	385, 809, 829
ErhI	CCWWGG	2 cut(s)	109, 134
FaeI	CATG	1 cut(s)	221
FaiI	YATR	7 cut(s)	124, 199, 219, 257, 280, 752, 832
FaqI	GGGAC	1 cut(s)	483
FatI	CATG	1 cut(s)	217
FauI	CCCGC	1 cut(s)	676
FbaI	TGATCA	2 cut(s)	264, 668
FblI	GTMKAC	2 cut(s)	688, 751
Fnu4HI	GCNGC	4 cut(s)	462, 518, 527, 728
FokI	GGATG	1 cut(s)	526
FriOI	GRGCYC	3 cut(s)	385, 809, 829
Fsp4HI	GCNGC	4 cut(s)	462, 518, 527, 728
FspBI	CTAG	4 cut(s)	140, 706, 755, 842
GluI	GCNGC	4 cut(s)	462, 518, 527, 728
GsuI	CTGGAG	1 cut(s)	44
HaeIII	GGCC	4 cut(s)	177, 520, 801, 827
HapII	CCGG	3 cut(s)	444, 697, 724
Hin1II	CATG	1 cut(s)	221
HincII	GTYRAC	1 cut(s)	689
HindII	GTYRAC	1 cut(s)	689
HindIII	AAGCTT	1 cut(s)	434
HinfI	GANTC	5 cut(s)	48, 114, 578, 596, 720
HpaII	CCGG	3 cut(s)	444, 697, 724
HphI	GGTGA	6 cut(s)	97, 271, 517, 619, 627, 744
Hpy166II	GTNNAC	7 cut(s)	105, 300, 430, 508, 595, 689, 752
Hpy188I	TCNGA	2 cut(s)	413, 642
Hpy188III	TCNNGA	4 cut(s)	33, 313, 538, 588
Hpy8I	GTNNAC	7 cut(s)	105, 300, 430, 508, 595, 689, 752
Hpy99I	CGWCG	1 cut(s)	693
HpyAV	CCTTC	2 cut(s)	342, 598
HpyCH4III	ACNGT	3 cut(s)	76, 288, 374
HpyCH4IV	ACGT	2 cut(s)	302, 691
HpyCH4V	TGCA	2 cut(s)	25, 652
HpyF10VI	GCNNNNNNNGC	5 cut(s)	145, 183, 523, 526, 772
HpyF3I	CTNAG	4 cut(s)	149, 230, 776, 878
HpySE526I	ACGT	2 cut(s)	302, 691
Hsp92II	CATG	1 cut(s)	221
Ksp22I	TGATCA	2 cut(s)	264, 668
Kzo9I	GATC	8 cut(s)	128, 165, 264, 408, 540, 617, 668, 699
LmnI	GCTCC	2 cut(s)	63, 388
LweI	GCATC	2 cut(s)	173, 504
MaeI	CTAG	4 cut(s)	140, 706, 755, 842
MaeII	ACGT	2 cut(s)	302, 691
MalI	GATC	8 cut(s)	130, 167, 266, 410, 542, 619, 670, 701
MboI	GATC	8 cut(s)	128, 165, 264, 408, 540, 617, 668, 699
MboII	GAAGA	3 cut(s)	25, 352, 357
MfeI	CAATTG	1 cut(s)	268
MflI	RGATCY	1 cut(s)	540
MhlI	GDGCHC	4 cut(s)	385, 697, 809, 829
MlsI	TGGCCA	1 cut(s)	177
MluCI	AATT	4 cut(s)	79, 93, 268, 659
MluNI	TGGCCA	1 cut(s)	177
MlyI	GAGTC	2 cut(s)	587, 590
MmeI	TCCRAC	1 cut(s)	95
MnlI	CCTC	9 cut(s)	138, 228, 486, 492, 594, 603, 606, 843, 876
Mox20I	TGGCCA	1 cut(s)	177
MroXI	GAANNNNTTC	1 cut(s)	359
MscI	TGGCCA	1 cut(s)	177
MseI	TTAA	1 cut(s)	305
MslI	CAYNNNNRTG	1 cut(s)	403
Msp20I	TGGCCA	1 cut(s)	177
MspA1I	CMGCKG	1 cut(s)	647
MspI	CCGG	3 cut(s)	444, 697, 724
MspR9I	CCNGG	4 cut(s)	62, 635, 697, 803
MunI	CAATTG	1 cut(s)	268
MvaI	CCWGG	3 cut(s)	62, 635, 803
MwoI	GCNNNNNNNGC	5 cut(s)	145, 183, 523, 526, 772
NciI	CCSGG	1 cut(s)	697
NdeII	GATC	8 cut(s)	128, 165, 264, 408, 540, 617, 668, 699
NlaIII	CATG	1 cut(s)	221
NlaIV	GGNNCC	1 cut(s)	827
PaeR7I	CTCGAG	1 cut(s)	598
PcsI	WCGNNNNNNNCGW	1 cut(s)	478
PdmI	GAANNNNTTC	1 cut(s)	359
PfeI	GAWTC	3 cut(s)	48, 114, 720
PflFI	GACNNNGTC	1 cut(s)	474
PkrI	GCNGC	4 cut(s)	463, 519, 528, 729
PleI	GAGTC	2 cut(s)	586, 590
PpsI	GAGTC	2 cut(s)	586, 590
Psp124BI	GAGCTC	1 cut(s)	385
Psp1406I	AACGTT	1 cut(s)	302
Psp6I	CCWGG	3 cut(s)	60, 633, 801
PspGI	CCWGG	3 cut(s)	60, 633, 801
PspN4I	GGNNCC	1 cut(s)	827
PspOMI	GGGCCC	1 cut(s)	825
PspPI	GGNCC	3 cut(s)	799, 825, 826
PspXI	VCTCGAGB	1 cut(s)	598
PsuI	RGATCY	1 cut(s)	540
PsyI	GACNNNGTC	1 cut(s)	474
RseI	CAYNNNNRTG	1 cut(s)	403
SacI	GAGCTC	1 cut(s)	385
SalI	GTCGAC	1 cut(s)	687
SaqAI	TTAA	1 cut(s)	305
SatI	GCNGC	4 cut(s)	462, 518, 527, 728
Sau3AI	GATC	8 cut(s)	128, 165, 264, 408, 540, 617, 668, 699
Sau96I	GGNCC	3 cut(s)	799, 825, 826
SchI	GAGTC	2 cut(s)	587, 590
ScrFI	CCNGG	4 cut(s)	62, 635, 697, 803
SduI	GDGCHC	4 cut(s)	385, 697, 809, 829
SfaNI	GCATC	2 cut(s)	173, 504
Sfr274I	CTCGAG	1 cut(s)	598
SlaI	CTCGAG	1 cut(s)	598
SmiMI	CAYNNNNRTG	1 cut(s)	403
SmlI	CTYRAG	3 cut(s)	33, 598, 808
SmoI	CTYRAG	3 cut(s)	33, 598, 808
Sse9I	AATT	4 cut(s)	79, 93, 268, 659
SsiI	CCGC	8 cut(s)	461, 496, 517, 527, 645, 683, 727, 730
SspMI	CTAG	4 cut(s)	140, 706, 755, 842
SstI	GAGCTC	1 cut(s)	385
StyD4I	CCNGG	4 cut(s)	60, 633, 695, 801
StyI	CCWWGG	2 cut(s)	109, 134
TaaI	ACNGT	3 cut(s)	76, 288, 374
TaiI	ACGT	2 cut(s)	305, 694
TaqI	TCGA	8 cut(s)	158, 164, 335, 439, 563, 587, 599, 688
TasI	AATT	4 cut(s)	79, 93, 268, 659
TauI	GCSGC	4 cut(s)	464, 520, 529, 730
TfiI	GAWTC	3 cut(s)	48, 114, 720
Tru1I	TTAA	1 cut(s)	305
Tru9I	TTAA	1 cut(s)	305
TspDTI	ATGAA	2 cut(s)	106, 206
Tth111I	GACNNNGTC	1 cut(s)	474
XhoI	CTCGAG	1 cut(s)	598
XmiI	GTMKAC	2 cut(s)	688, 751
XmnI	GAANNNNTTC	1 cut(s)	359
XspI	CTAG	4 cut(s)	140, 706, 755, 842

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.