Rorug02G0182800

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000917
Physical Location & Seq
Forward (+)
17047194 .. 17048120
927 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0182800.1

Sequence Viewer

Length: 927 bp
ATGGATCGGATGGATCGGATCAAGGGTCCGTGGAGCCCCGAGGAGGACGACGCTCTGCAGAGTCTAGTCCAGAAGCACGGGCCGCGGAACTGGTCTTTGATAAGCAAGGCCATTCCGGGGCGGTCCGGGAAGTCGTGCCGTCTCAGATGGTGTAACCAGCTCTCGCCGCAGGTGGAGCACCGCGCCTTCACTACCGAAGAGGACGACACCATCATCCGAGCCCACGCGCGGTTCGGCAACAAGTGGGCCACAATCGCCAGGCTCCTCAACGGCCGCACCGACAACGCCATCAAAAACCACTGGAACTCCACCCTCAAGCGCAAGTGCTCTTCCATGAGCGACGACGGTGACGGTAGCGGAAACGTGTTCGGTGGAGGGTACGACGGTAATTTCCACGTCCAGCCGCCTTTGAAAAGGTCCGTGAGCGCCGGGTCGGGCGTGCCCGTGTCCACGGAGCTGTTCATGAACCCGGGTAGCCCGTCCGGGTCGGATGTGAGCGACTCCAGCGTGCAGGTGATGTCACCCTCCCACGTGTACAGGCCTGTGGCGCGTGCCGGCGGGGTTCTACCTCCAGTAGAAACGACGTCGTCTTCTAACAATAACAACAGCAACATCAACCTCAACAGTGATCCTCCGACGTCGCTCTCCCTTTCGCTCCCTGGTGTCGACTCCTGTGAAGTCTCGAACCGAGTCGCGGCGACCGAGTCGACGATTCAGAATCAGGCGCATCCTGCTCCTGCGCCGGTTTCTGATCCGATGAGGAGTTTTCCGGCGGAGCTGTTGGAGCTGATGCAGGGGATGATAAAGAAGGAGGTGAGGAGCTATATGGAGGGGTTGGAGCAGAGTGGGTTTGGGATTATGAAGCAGCAAAATGATGGGTTTAGGAATGTTGCAGTGAAGCGAATTGGGATCAGCAGGATTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

308

Amino Acids

33.49

Weight (kDa)

8.35

Isoelectric Point (pI)

58.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 8 - 54 3e-19 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 11 - 69 1.4e-17 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 62 - 104 1.2e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 63 - 110 1.3e-10 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 160, 502
AatII GACGTC 2 cut(s) 587, 641
Acc36I ACCTGC 2 cut(s) 160, 502
AccI GTMKAC 2 cut(s) 666, 707
AccII CGCG 6 cut(s) 85, 183, 227, 229, 550, 695
AclWI GGATC 6 cut(s) 12, 21, 26, 623, 746, 917
AcoI YGGCCR 1 cut(s) 271
AcvI CACGTG 1 cut(s) 532
AcyI GRCGYC 2 cut(s) 584, 638
AfaI GTAC 2 cut(s) 380, 536
AfiI CCNNNNNNNGG 4 cut(s) 43, 117, 228, 694
AflIII ACRYGT 2 cut(s) 363, 531
AgsI TTSAA 1 cut(s) 412
AjiI CACGTC 1 cut(s) 397
AjnI CCWGG 2 cut(s) 257, 658
AluBI AGCT 5 cut(s) 160, 457, 778, 787, 822
AluI AGCT 5 cut(s) 160, 457, 778, 787, 822
Alw21I GWGCWC 2 cut(s) 180, 329
Alw26I GTCTC 2 cut(s) 146, 685
AlwI GGATC 6 cut(s) 12, 21, 26, 623, 746, 917
Ama87I CYCGRG 2 cut(s) 38, 469
AoxI GGCC 5 cut(s) 80, 108, 246, 271, 539
ApeKI GCWGC 1 cut(s) 865
AspLEI GCGC 7 cut(s) 185, 229, 321, 428, 550, 727, 742
AspS9I GGNCC 5 cut(s) 26, 80, 123, 246, 417
AsuC2I CCSGG 6 cut(s) 117, 127, 430, 470, 471, 484
AsuHPI GGTGA 4 cut(s) 359, 513, 526, 826
AvaI CYCGRG 2 cut(s) 38, 469
AvaII GGWCC 3 cut(s) 26, 123, 417
BaeGI GKGCMC 1 cut(s) 444
BaeI ACNNNNGTAYC 2 cut(s) 370, 403
BanII GRGCYC 2 cut(s) 38, 223
BbrPI CACGTG 1 cut(s) 532
BbsI GAAGAC 1 cut(s) 582
Bbv12I GWGCWC 2 cut(s) 180, 329
BbvI GCAGC 1 cut(s) 877
BccI CCATC 5 cut(s) 4, 141, 218, 296, 869
BceAI ACGGC 2 cut(s) 123, 286
BciT130I CCWGG 2 cut(s) 259, 660
BcnI CCSGG 6 cut(s) 117, 127, 430, 470, 471, 484
BcoDI GTCTC 2 cut(s) 146, 685
BfaI CTAG 1 cut(s) 65
BfmI CTRYAG 1 cut(s) 56
BfoI RGCGCY 1 cut(s) 429
BfuAI ACCTGC 2 cut(s) 160, 502
BisI GCNGC 6 cut(s) 83, 167, 274, 404, 696, 866
BlsI GCNGC 6 cut(s) 84, 168, 275, 405, 697, 867
Bme1390I CCNGG 8 cut(s) 117, 127, 259, 430, 470, 471, 484, 660
Bme18I GGWCC 3 cut(s) 26, 123, 417
BmeT110I CYCGRG 2 cut(s) 38, 469
BmgBI CACGTC 1 cut(s) 397
BmgT120I GGNCC 5 cut(s) 26, 80, 123, 246, 417
BmiI GGNNCC 3 cut(s) 27, 35, 263
BmrFI CCNGG 8 cut(s) 117, 127, 259, 430, 470, 471, 484, 660
BmsI GCATC 2 cut(s) 736, 780
BpiI GAAGAC 1 cut(s) 582
BpmI CTGGAG 2 cut(s) 487, 555
BpuEI CTTGAG 1 cut(s) 299
BpuMI CCSGG 6 cut(s) 117, 127, 430, 470, 471, 484
BsaAI YACGTR 1 cut(s) 532
BsaHI GRCGYC 2 cut(s) 584, 638
BsaJI CCNNGG 7 cut(s) 29, 39, 83, 116, 450, 469, 658
BsaXI ACNNNNNCTCC 2 cut(s) 290, 320
Bsc4I CCNNNNNNNGG 4 cut(s) 43, 117, 228, 694
Bse118I RCCGGY 2 cut(s) 554, 742
Bse1I ACTGG 3 cut(s) 95, 305, 572
BseBI CCWGG 2 cut(s) 259, 660
BseDI CCNNGG 7 cut(s) 29, 39, 83, 116, 450, 469, 658
BseGI GGATG 5 cut(s) 15, 213, 496, 727, 804
BseLI CCNNNNNNNGG 4 cut(s) 43, 117, 228, 694
BseMII CTCAG 1 cut(s) 157
BseNI ACTGG 3 cut(s) 95, 305, 572
BseRI GAGGAG 4 cut(s) 56, 254, 775, 832
BseSI GKGCMC 1 cut(s) 444
BseX3I CGGCCG 1 cut(s) 271
BseXI GCAGC 1 cut(s) 877
BsgI GTGCAG 1 cut(s) 530
Bsh1236I CGCG 6 cut(s) 85, 183, 227, 229, 550, 695
Bsh1285I CGRYCG 2 cut(s) 274, 702
BshFI GGCC 5 cut(s) 82, 110, 248, 273, 541
BsiEI CGRYCG 2 cut(s) 274, 702
BsiHKAI GWGCWC 2 cut(s) 180, 329
BsiHKCI CYCGRG 2 cut(s) 38, 469
BsiSI CCGG 8 cut(s) 116, 126, 429, 470, 483, 555, 743, 770
BslI CCNNNNNNNGG 4 cut(s) 43, 117, 228, 694
BsmAI GTCTC 2 cut(s) 146, 685
BsmBI CGTCTC 1 cut(s) 146
BsnI GGCC 5 cut(s) 82, 110, 248, 273, 541
BsoBI CYCGRG 2 cut(s) 38, 469
Bsp1286I GDGCHC 5 cut(s) 38, 180, 223, 329, 444
Bsp1407I TGTACA 1 cut(s) 534
Bsp143I GATC 6 cut(s) 4, 13, 18, 628, 751, 909
BspANI GGCC 5 cut(s) 82, 110, 248, 273, 541
BspCNI CTCAG 1 cut(s) 156
BspFNI CGCG 6 cut(s) 85, 183, 227, 229, 550, 695
BspHI TCATGA 1 cut(s) 462
BspLI GGNNCC 3 cut(s) 27, 35, 263
BspMAI CTGCAG 1 cut(s) 60
BspMI ACCTGC 2 cut(s) 160, 502
BspPI GGATC 6 cut(s) 12, 21, 26, 623, 746, 917
BspQI GCTCTTC 1 cut(s) 334
BsrFI RCCGGY 2 cut(s) 554, 742
BsrGI TGTACA 1 cut(s) 534
BsrI ACTGG 3 cut(s) 95, 305, 572
BssAI RCCGGY 2 cut(s) 554, 742
BssECI CCNNGG 7 cut(s) 29, 39, 83, 116, 450, 469, 658
BssMI GATC 6 cut(s) 4, 13, 18, 628, 751, 909
BssNI GRCGYC 2 cut(s) 584, 638
Bst2UI CCWGG 2 cut(s) 259, 660
Bst4CI ACNGT 4 cut(s) 347, 353, 386, 626
Bst6I CTCTTC 2 cut(s) 192, 334
BstACI GRCGYC 2 cut(s) 584, 638
BstAUI TGTACA 1 cut(s) 534
BstBAI YACGTR 1 cut(s) 532
BstC8I GCNNGC 4 cut(s) 440, 509, 552, 556
BstDEI CTNAG 1 cut(s) 143
BstDSI CCRYGG 3 cut(s) 29, 83, 450
BstF5I GGATG 5 cut(s) 15, 213, 496, 727, 804
BstFNI CGCG 6 cut(s) 85, 183, 227, 229, 550, 695
BstH2I RGCGCY 1 cut(s) 429
BstHHI GCGC 7 cut(s) 185, 229, 321, 428, 550, 727, 742
BstKTI GATC 6 cut(s) 7, 16, 21, 631, 754, 912
BstMAI GTCTC 2 cut(s) 146, 685
BstMBI GATC 6 cut(s) 4, 13, 18, 628, 751, 909
BstMCI CGRYCG 2 cut(s) 274, 702
BstMWI GCNNNNNNNGC 8 cut(s) 82, 166, 175, 254, 504, 547, 731, 784
BstNI CCWGG 2 cut(s) 259, 660
BstSCI CCNGG 8 cut(s) 115, 125, 257, 428, 468, 469, 482, 658
BstSFI CTRYAG 1 cut(s) 56
BstSLI GKGCMC 1 cut(s) 444
BstUI CGCG 6 cut(s) 85, 183, 227, 229, 550, 695
BstV1I GCAGC 1 cut(s) 877
BstV2I GAAGAC 1 cut(s) 582
BstZI CGGCCG 1 cut(s) 271
BsuRI GGCC 5 cut(s) 82, 110, 248, 273, 541
BtgI CCRYGG 3 cut(s) 29, 83, 450
BtrI CACGTC 1 cut(s) 397
BtsCI GGATG 5 cut(s) 15, 213, 496, 727, 804
BtsI GCAGTG 1 cut(s) 900
BtsIMutI CAGTG 3 cut(s) 298, 631, 900
BveI ACCTGC 2 cut(s) 160, 502
Cac8I GCNNGC 4 cut(s) 440, 509, 552, 556
CciI TCATGA 1 cut(s) 462
CfoI GCGC 7 cut(s) 185, 229, 321, 428, 550, 727, 742
Cfr10I RCCGGY 2 cut(s) 554, 742
Cfr13I GGNCC 5 cut(s) 26, 80, 123, 246, 417
Cfr42I CCGCGG 1 cut(s) 86
Cfr9I CCCGGG 1 cut(s) 469
CpoI CGGWCCG 1 cut(s) 123
CseI GACGC 1 cut(s) 59
Csp6I GTAC 2 cut(s) 379, 535
CspI CGGWCCG 1 cut(s) 123
CviAII CATG 2 cut(s) 334, 463
CviQI GTAC 2 cut(s) 379, 535
DdeI CTNAG 1 cut(s) 143
DpnI GATC 6 cut(s) 6, 15, 20, 630, 753, 911
DpnII GATC 6 cut(s) 4, 13, 18, 628, 751, 909
EaeI YGGCCR 1 cut(s) 271
EagI CGGCCG 1 cut(s) 271
Eam1104I CTCTTC 2 cut(s) 192, 334
EarI CTCTTC 2 cut(s) 192, 334
EciI GGCGGA 1 cut(s) 788
EclXI CGGCCG 1 cut(s) 271
Eco147I AGGCCT 1 cut(s) 541
Eco24I GRGCYC 2 cut(s) 38, 223
Eco47I GGWCC 3 cut(s) 26, 123, 417
Eco52I CGGCCG 1 cut(s) 271
Eco72I CACGTG 1 cut(s) 532
Eco88I CYCGRG 2 cut(s) 38, 469
EcoRII CCWGG 2 cut(s) 257, 658
EcoT38I GRGCYC 2 cut(s) 38, 223
Esp3I CGTCTC 1 cut(s) 146
FaeI CATG 2 cut(s) 337, 466
FaiI YATR 5 cut(s) 335, 464, 825, 827, 860
FatI CATG 2 cut(s) 333, 462
FauI CCCGC 1 cut(s) 551
FblI GTMKAC 2 cut(s) 666, 707
Fnu4HI GCNGC 6 cut(s) 83, 167, 274, 404, 696, 866
FokI GGATG 5 cut(s) 22, 200, 503, 714, 811
FriOI GRGCYC 2 cut(s) 38, 223
Fsp4HI GCNGC 6 cut(s) 83, 167, 274, 404, 696, 866
FspBI CTAG 1 cut(s) 65
GlaI GCGC 7 cut(s) 184, 228, 320, 427, 549, 726, 741
GluI GCNGC 6 cut(s) 83, 167, 274, 404, 696, 866
GsuI CTGGAG 2 cut(s) 487, 555
HaeII RGCGCY 1 cut(s) 429
HaeIII GGCC 5 cut(s) 82, 110, 248, 273, 541
HapII CCGG 8 cut(s) 116, 126, 429, 470, 483, 555, 743, 770
HgaI GACGC 1 cut(s) 59
HhaI GCGC 7 cut(s) 185, 229, 321, 428, 550, 727, 742
Hin1I GRCGYC 2 cut(s) 584, 638
Hin1II CATG 2 cut(s) 337, 466
Hin6I GCGC 7 cut(s) 183, 227, 319, 426, 548, 725, 740
HinP1I GCGC 7 cut(s) 183, 227, 319, 426, 548, 725, 740
HincII GTYRAC 2 cut(s) 667, 708
HindII GTYRAC 2 cut(s) 667, 708
HinfI GANTC 7 cut(s) 61, 500, 668, 690, 704, 712, 718
HpaII CCGG 8 cut(s) 116, 126, 429, 470, 483, 555, 743, 770
HphI GGTGA 4 cut(s) 359, 513, 526, 826
Hpy166II GTNNAC 4 cut(s) 450, 535, 667, 708
Hpy188I TCNGA 9 cut(s) 9, 18, 146, 218, 490, 636, 717, 751, 756
Hpy188III TCNNGA 3 cut(s) 70, 463, 682
Hpy8I GTNNAC 4 cut(s) 450, 535, 667, 708
Hpy99I CGWCG 9 cut(s) 53, 344, 347, 386, 586, 589, 640, 643, 712
HpyAV CCTTC 2 cut(s) 196, 802
HpyCH4III ACNGT 4 cut(s) 347, 353, 386, 626
HpyCH4IV ACGT 5 cut(s) 363, 396, 531, 584, 638
HpyCH4V TGCA 4 cut(s) 58, 511, 793, 893
HpyF10VI GCNNNNNNNGC 8 cut(s) 82, 166, 175, 254, 504, 547, 731, 784
HpyF3I CTNAG 1 cut(s) 143
HpySE526I ACGT 5 cut(s) 363, 396, 531, 584, 638
Hsp92I GRCGYC 2 cut(s) 584, 638
Hsp92II CATG 2 cut(s) 337, 466
HspAI GCGC 7 cut(s) 183, 227, 319, 426, 548, 725, 740
KroI GCCGGC 1 cut(s) 554
KroNI GCCGGC 1 cut(s) 556
KspI CCGCGG 1 cut(s) 86
Kzo9I GATC 6 cut(s) 4, 13, 18, 628, 751, 909
LguI GCTCTTC 1 cut(s) 334
Lsp1109I GCAGC 1 cut(s) 877
LweI GCATC 2 cut(s) 736, 780
MaeI CTAG 1 cut(s) 65
MaeII ACGT 5 cut(s) 363, 396, 531, 584, 638
MaeIII GTNAC 3 cut(s) 152, 347, 519
MalI GATC 6 cut(s) 6, 15, 20, 630, 753, 911
MboI GATC 6 cut(s) 4, 13, 18, 628, 751, 909
MboII GAAGA 3 cut(s) 209, 321, 582
MhlI GDGCHC 5 cut(s) 38, 180, 223, 329, 444
MluCI AATT 2 cut(s) 388, 903
MlyI GAGTC 5 cut(s) 70, 494, 662, 699, 713
MmeI TCCRAC 4 cut(s) 468, 659, 762, 816
MroNI GCCGGC 1 cut(s) 554
MspA1I CMGCKG 1 cut(s) 85
MspI CCGG 8 cut(s) 116, 126, 429, 470, 483, 555, 743, 770
MspR9I CCNGG 8 cut(s) 117, 127, 259, 430, 470, 471, 484, 660
MvaI CCWGG 2 cut(s) 259, 660
MvnI CGCG 6 cut(s) 85, 183, 227, 229, 550, 695
MwoI GCNNNNNNNGC 8 cut(s) 82, 166, 175, 254, 504, 547, 731, 784
NaeI GCCGGC 1 cut(s) 556
NciI CCSGG 6 cut(s) 117, 127, 430, 470, 471, 484
NdeII GATC 6 cut(s) 4, 13, 18, 628, 751, 909
NgoMIV GCCGGC 1 cut(s) 554
NlaIII CATG 2 cut(s) 337, 466
NlaIV GGNNCC 3 cut(s) 27, 35, 263
NmuCI GTSAC 2 cut(s) 347, 519
PagI TCATGA 1 cut(s) 462
PaqCI CACCTGC 2 cut(s) 160, 502
PceI AGGCCT 1 cut(s) 541
PciSI GCTCTTC 1 cut(s) 334
PcsI WCGNNNNNNNCGW 2 cut(s) 276, 699
PdiI GCCGGC 1 cut(s) 556
PfeI GAWTC 2 cut(s) 712, 718
PflFI GACNNNGTC 2 cut(s) 586, 703
PfoI TCCNGGA 1 cut(s) 125
PkrI GCNGC 6 cut(s) 84, 168, 275, 405, 697, 867
PleI GAGTC 5 cut(s) 69, 494, 662, 698, 712
PmaCI CACGTG 1 cut(s) 532
PmlI CACGTG 1 cut(s) 532
PpsI GAGTC 5 cut(s) 69, 494, 662, 698, 712
Ppu21I YACGTR 1 cut(s) 532
Psp6I CCWGG 2 cut(s) 257, 658
PspCI CACGTG 1 cut(s) 532
PspGI CCWGG 2 cut(s) 257, 658
PspN4I GGNNCC 3 cut(s) 27, 35, 263
PspPI GGNCC 5 cut(s) 26, 80, 123, 246, 417
PstI CTGCAG 1 cut(s) 60
PsyI GACNNNGTC 2 cut(s) 586, 703
RsaI GTAC 2 cut(s) 380, 536
RsaNI GTAC 2 cut(s) 379, 535
Rsr2I CGGWCCG 1 cut(s) 123
RsrII CGGWCCG 1 cut(s) 123
SacII CCGCGG 1 cut(s) 86
SalI GTCGAC 2 cut(s) 665, 706
SapI GCTCTTC 1 cut(s) 334
SatI GCNGC 6 cut(s) 83, 167, 274, 404, 696, 866
Sau3AI GATC 6 cut(s) 4, 13, 18, 628, 751, 909
Sau96I GGNCC 5 cut(s) 26, 80, 123, 246, 417
SchI GAGTC 5 cut(s) 70, 494, 662, 699, 713
ScrFI CCNGG 8 cut(s) 117, 127, 259, 430, 470, 471, 484, 660
SduI GDGCHC 5 cut(s) 38, 180, 223, 329, 444
SfaNI GCATC 2 cut(s) 736, 780
SfcI CTRYAG 1 cut(s) 56
Sfr303I CCGCGG 1 cut(s) 86
SgrBI CCGCGG 1 cut(s) 86
SinI GGWCC 3 cut(s) 26, 123, 417
SmaI CCCGGG 1 cut(s) 471
SmlI CTYRAG 1 cut(s) 314
SmoI CTYRAG 1 cut(s) 314
Sse9I AATT 2 cut(s) 388, 903
SseBI AGGCCT 1 cut(s) 541
SspMI CTAG 1 cut(s) 65
StuI AGGCCT 1 cut(s) 541
StyD4I CCNGG 8 cut(s) 115, 125, 257, 428, 468, 469, 482, 658
TaaI ACNGT 4 cut(s) 347, 353, 386, 626
TaiI ACGT 5 cut(s) 366, 399, 534, 587, 641
TaqI TCGA 3 cut(s) 666, 683, 707
TaqII GACCGA 1 cut(s) 716
TasI AATT 2 cut(s) 388, 903
TatI WGTACW 1 cut(s) 534
TauI GCSGC 5 cut(s) 85, 169, 276, 406, 698
TfiI GAWTC 2 cut(s) 712, 718
TscAI CASTG 3 cut(s) 305, 631, 900
TseFI GTSAC 2 cut(s) 347, 519
TseI GCWGC 1 cut(s) 865
Tsp45I GTSAC 2 cut(s) 347, 519
TspDTI ATGAA 3 cut(s) 451, 479, 875
TspGWI ACGGA 3 cut(s) 18, 409, 467
TspMI CCCGGG 1 cut(s) 469
TspRI CASTG 3 cut(s) 305, 631, 900
Tth111I GACNNNGTC 2 cut(s) 586, 703
VpaK11BI GGWCC 3 cut(s) 26, 123, 417
XmaI CCCGGG 1 cut(s) 469
XmiI GTMKAC 2 cut(s) 666, 707
XspI CTAG 1 cut(s) 65
ZraI GACGTC 2 cut(s) 585, 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.