Encoded by
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1321, 1408 |
| AccI | GTMKAC | 3 cut(s) | 239, 721, 1273 |
| AccII | CGCG | 1 cut(s) | 250 |
| AccIII | TCCGGA | 1 cut(s) | 525 |
| AciI | CCGC | 5 cut(s) | 94, 144, 157, 1264, 1424 |
| AclWI | GGATC | 4 cut(s) | 792, 1452, 1557, 1701 |
| AcoI | YGGCCR | 3 cut(s) | 639, 677, 769 |
| AcsI | RAATTY | 2 cut(s) | 1038, 1504 |
| AcuI | CTGAAG | 2 cut(s) | 522, 1314 |
| AfaI | GTAC | 4 cut(s) | 601, 700, 1473, 1736 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 778, 1321, 1408 |
| AflIII | ACRYGT | 1 cut(s) | 1468 |
| AjiI | CACGTC | 1 cut(s) | 725 |
| Alw26I | GTCTC | 6 cut(s) | 116, 500, 637, 1064, 1553, 1595 |
| AlwI | GGATC | 4 cut(s) | 792, 1452, 1557, 1701 |
| Ama87I | CYCGRG | 2 cut(s) | 221, 541 |
| Aor13HI | TCCGGA | 1 cut(s) | 525 |
| AoxI | GGCC | 5 cut(s) | 135, 440, 639, 677, 769 |
| ApeKI | GCWGC | 2 cut(s) | 205, 228 |
| ApoI | RAATTY | 2 cut(s) | 1038, 1504 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 74 |
| AspLEI | GCGC | 4 cut(s) | 93, 228, 252, 1656 |
| AspS9I | GGNCC | 1 cut(s) | 294 |
| AsuHPI | GGTGA | 8 cut(s) | 79, 133, 210, 276, 524, 877, 1083, 1247 |
| AvaI | CYCGRG | 2 cut(s) | 221, 541 |
| AvaII | GGWCC | 1 cut(s) | 294 |
| BaeGI | GKGCMC | 1 cut(s) | 119 |
| BalI | TGGCCA | 2 cut(s) | 641, 679 |
| BanII | GRGCYC | 1 cut(s) | 949 |
| BbsI | GAAGAC | 2 cut(s) | 1164, 1713 |
| BbvCI | CCTCAGC | 1 cut(s) | 1250 |
| BbvI | GCAGC | 2 cut(s) | 217, 240 |
| BccI | CCATC | 3 cut(s) | 137, 146, 669 |
| BceAI | ACGGC | 1 cut(s) | 673 |
| BcoDI | GTCTC | 6 cut(s) | 116, 500, 637, 1064, 1553, 1595 |
| BfaI | CTAG | 5 cut(s) | 200, 582, 875, 1139, 1463 |
| BfmI | CTRYAG | 1 cut(s) | 1225 |
| BfoI | RGCGCY | 1 cut(s) | 94 |
| BglII | AGATCT | 1 cut(s) | 254 |
| BisI | GCNGC | 4 cut(s) | 94, 206, 229, 1265 |
| BlpI | GCTNAGC | 1 cut(s) | 651 |
| BlsI | GCNGC | 4 cut(s) | 95, 207, 230, 1266 |
| Bme18I | GGWCC | 1 cut(s) | 294 |
| BmeT110I | CYCGRG | 2 cut(s) | 221, 541 |
| BmgBI | CACGTC | 1 cut(s) | 725 |
| BmgT120I | GGNCC | 1 cut(s) | 294 |
| BmrI | ACTGGG | 1 cut(s) | 61 |
| BmsI | GCATC | 6 cut(s) | 201, 616, 675, 910, 1264, 1464 |
| BmuI | ACTGGG | 1 cut(s) | 61 |
| BpiI | GAAGAC | 2 cut(s) | 1164, 1713 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 215, 247 |
| BpmI | CTGGAG | 1 cut(s) | 1065 |
| Bpu10I | CCTNAGC | 2 cut(s) | 842, 1250 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 651 |
| BpuEI | CTTGAG | 4 cut(s) | 35, 389, 1484, 1577 |
| Bsa29I | ATCGAT | 1 cut(s) | 1696 |
| BsaI | GGTCTC | 1 cut(s) | 637 |
| BsaJI | CCNNGG | 5 cut(s) | 611, 636, 680, 979, 1407 |
| BsaWI | WCCGGW | 2 cut(s) | 286, 525 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 773, 803, 1063, 1093 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 778, 1321, 1408 |
| Bse1I | ACTGG | 4 cut(s) | 56, 73, 458, 1402 |
| Bse3DI | GCAATG | 1 cut(s) | 1152 |
| BseAI | TCCGGA | 1 cut(s) | 525 |
| BseCI | ATCGAT | 1 cut(s) | 1696 |
| BseDI | CCNNGG | 5 cut(s) | 611, 636, 680, 979, 1407 |
| BseGI | GGATG | 5 cut(s) | 193, 607, 690, 1455, 1642 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 778, 1321, 1408 |
| BseMI | GCAATG | 1 cut(s) | 1152 |
| BseMII | CTCAG | 8 cut(s) | 111, 272, 747, 962, 1040, 1241, 1282, 1554 |
| BseNI | ACTGG | 4 cut(s) | 56, 73, 458, 1402 |
| BseSI | GKGCMC | 1 cut(s) | 119 |
| BseXI | GCAGC | 2 cut(s) | 217, 240 |
| BsgI | GTGCAG | 1 cut(s) | 224 |
| Bsh1236I | CGCG | 1 cut(s) | 250 |
| BshFI | GGCC | 5 cut(s) | 137, 442, 641, 679, 771 |
| BshVI | ATCGAT | 1 cut(s) | 1696 |
| BsiHKCI | CYCGRG | 2 cut(s) | 221, 541 |
| BsiSI | CCGG | 5 cut(s) | 263, 287, 526, 772, 1427 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 778, 1321, 1408 |
| BsmAI | GTCTC | 6 cut(s) | 116, 500, 637, 1064, 1553, 1595 |
| BsmBI | CGTCTC | 1 cut(s) | 1595 |
| BsnI | GGCC | 5 cut(s) | 137, 442, 641, 679, 771 |
| Bso31I | GGTCTC | 1 cut(s) | 637 |
| BsoBI | CYCGRG | 2 cut(s) | 221, 541 |
| Bsp1286I | GDGCHC | 2 cut(s) | 119, 949 |
| Bsp13I | TCCGGA | 1 cut(s) | 525 |
| Bsp1407I | TGTACA | 1 cut(s) | 599 |
| Bsp143I | GATC | 8 cut(s) | 105, 254, 784, 1045, 1237, 1444, 1549, 1693 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 651 |
| BspACI | CCGC | 5 cut(s) | 94, 144, 157, 1264, 1424 |
| BspANI | GGCC | 5 cut(s) | 137, 442, 641, 679, 771 |
| BspCNI | CTCAG | 8 cut(s) | 112, 271, 748, 961, 1041, 1242, 1281, 1555 |
| BspDI | ATCGAT | 1 cut(s) | 1696 |
| BspEI | TCCGGA | 1 cut(s) | 525 |
| BspFNI | CGCG | 1 cut(s) | 250 |
| BspHI | TCATGA | 1 cut(s) | 1678 |
| BspMAI | CTGCAG | 1 cut(s) | 1229 |
| BspPI | GGATC | 4 cut(s) | 792, 1452, 1557, 1701 |
| BspTNI | GGTCTC | 1 cut(s) | 637 |
| BsrDI | GCAATG | 1 cut(s) | 1152 |
| BsrGI | TGTACA | 1 cut(s) | 599 |
| BsrI | ACTGG | 4 cut(s) | 56, 73, 458, 1402 |
| BssECI | CCNNGG | 5 cut(s) | 611, 636, 680, 979, 1407 |
| BssMI | GATC | 8 cut(s) | 105, 254, 784, 1045, 1237, 1444, 1549, 1693 |
| BssNAI | GTATAC | 1 cut(s) | 1274 |
| BssT1I | CCWWGG | 4 cut(s) | 611, 636, 680, 1407 |
| Bst1107I | GTATAC | 1 cut(s) | 1274 |
| Bst4CI | ACNGT | 6 cut(s) | 604, 796, 816, 882, 1576, 1676 |
| Bst6I | CTCTTC | 4 cut(s) | 431, 498, 1182, 1344 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 211 |
| BstAUI | TGTACA | 1 cut(s) | 599 |
| BstC8I | GCNNGC | 3 cut(s) | 32, 648, 1057 |
| BstF5I | GGATG | 5 cut(s) | 193, 607, 690, 1455, 1642 |
| BstFNI | CGCG | 1 cut(s) | 250 |
| BstH2I | RGCGCY | 1 cut(s) | 94 |
| BstHHI | GCGC | 4 cut(s) | 93, 228, 252, 1656 |
| BstKTI | GATC | 8 cut(s) | 108, 257, 787, 1048, 1240, 1447, 1552, 1696 |
| BstMAI | GTCTC | 6 cut(s) | 116, 500, 637, 1064, 1553, 1595 |
| BstMBI | GATC | 8 cut(s) | 105, 254, 784, 1045, 1237, 1444, 1549, 1693 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 55, 143, 211, 647, 652, 685, 1261, 1594 |
| BstNSI | RCATGY | 4 cut(s) | 163, 732, 1059, 1472 |
| BstSFI | CTRYAG | 1 cut(s) | 1225 |
| BstSLI | GKGCMC | 1 cut(s) | 119 |
| BstUI | CGCG | 1 cut(s) | 250 |
| BstV1I | GCAGC | 2 cut(s) | 217, 240 |
| BstV2I | GAAGAC | 2 cut(s) | 1164, 1713 |
| BstX2I | RGATCY | 3 cut(s) | 254, 784, 1444 |
| BstYI | RGATCY | 3 cut(s) | 254, 784, 1444 |
| BstZ17I | GTATAC | 1 cut(s) | 1274 |
| Bsu15I | ATCGAT | 1 cut(s) | 1696 |
| BsuRI | GGCC | 5 cut(s) | 137, 442, 641, 679, 771 |
| BsuTUI | ATCGAT | 1 cut(s) | 1696 |
| BtrI | CACGTC | 1 cut(s) | 725 |
| BtsCI | GGATG | 5 cut(s) | 193, 607, 690, 1455, 1642 |
| BtsIMutI | CAGTG | 4 cut(s) | 49, 117, 609, 801 |
| Cac8I | GCNNGC | 3 cut(s) | 32, 648, 1057 |
| CciI | TCATGA | 1 cut(s) | 1678 |
| CfoI | GCGC | 4 cut(s) | 93, 228, 252, 1656 |
| Cfr13I | GGNCC | 1 cut(s) | 294 |
| ClaI | ATCGAT | 1 cut(s) | 1696 |
| CseI | GACGC | 2 cut(s) | 256, 1577 |
| Csp6I | GTAC | 4 cut(s) | 600, 699, 1472, 1735 |
| CviQI | GTAC | 4 cut(s) | 600, 699, 1472, 1735 |
| DpnI | GATC | 8 cut(s) | 107, 256, 786, 1047, 1239, 1446, 1551, 1695 |
| DpnII | GATC | 8 cut(s) | 105, 254, 784, 1045, 1237, 1444, 1549, 1693 |
| DraI | TTTAAA | 1 cut(s) | 1509 |
| EaeI | YGGCCR | 3 cut(s) | 639, 677, 769 |
| Eam1104I | CTCTTC | 4 cut(s) | 431, 498, 1182, 1344 |
| EarI | CTCTTC | 4 cut(s) | 431, 498, 1182, 1344 |
| EciI | GGCGGA | 1 cut(s) | 1413 |
| Eco130I | CCWWGG | 4 cut(s) | 611, 636, 680, 1407 |
| Eco147I | AGGCCT | 1 cut(s) | 442 |
| Eco24I | GRGCYC | 1 cut(s) | 949 |
| Eco31I | GGTCTC | 1 cut(s) | 637 |
| Eco32I | GATATC | 2 cut(s) | 987, 1087 |
| Eco47I | GGWCC | 1 cut(s) | 294 |
| Eco57I | CTGAAG | 2 cut(s) | 522, 1314 |
| Eco88I | CYCGRG | 2 cut(s) | 221, 541 |
| EcoRV | GATATC | 2 cut(s) | 987, 1087 |
| EcoT14I | CCWWGG | 4 cut(s) | 611, 636, 680, 1407 |
| EcoT22I | ATGCAT | 1 cut(s) | 574 |
| EcoT38I | GRGCYC | 1 cut(s) | 949 |
| ErhI | CCWWGG | 4 cut(s) | 611, 636, 680, 1407 |
| Esp3I | CGTCTC | 1 cut(s) | 1595 |
| FalI | AAGNNNNNCTT | 3 cut(s) | 29, 95, 127 |
| FauNDI | CATATG | 2 cut(s) | 624, 1745 |
| FblI | GTMKAC | 3 cut(s) | 239, 721, 1273 |
| Fnu4HI | GCNGC | 4 cut(s) | 94, 206, 229, 1265 |
| FokI | GGATG | 5 cut(s) | 180, 594, 697, 1442, 1649 |
| FriOI | GRGCYC | 1 cut(s) | 949 |
| Fsp4HI | GCNGC | 4 cut(s) | 94, 206, 229, 1265 |
| FspBI | CTAG | 5 cut(s) | 200, 582, 875, 1139, 1463 |
| GlaI | GCGC | 4 cut(s) | 92, 227, 251, 1655 |
| GluI | GCNGC | 4 cut(s) | 94, 206, 229, 1265 |
| GsuI | CTGGAG | 1 cut(s) | 1065 |
| HaeII | RGCGCY | 1 cut(s) | 94 |
| HaeIII | GGCC | 5 cut(s) | 137, 442, 641, 679, 771 |
| HapII | CCGG | 5 cut(s) | 263, 287, 526, 772, 1427 |
| HgaI | GACGC | 2 cut(s) | 256, 1577 |
| HhaI | GCGC | 4 cut(s) | 93, 228, 252, 1656 |
| Hin6I | GCGC | 4 cut(s) | 91, 226, 250, 1654 |
| HinP1I | GCGC | 4 cut(s) | 91, 226, 250, 1654 |
| HincII | GTYRAC | 2 cut(s) | 240, 792 |
| HindII | GTYRAC | 2 cut(s) | 240, 792 |
| HindIII | AAGCTT | 2 cut(s) | 653, 1022 |
| HinfI | GANTC | 7 cut(s) | 236, 271, 422, 550, 668, 868, 1102 |
| HpaII | CCGG | 5 cut(s) | 263, 287, 526, 772, 1427 |
| HphI | GGTGA | 8 cut(s) | 79, 133, 210, 276, 524, 877, 1083, 1247 |
| Hpy166II | GTNNAC | 9 cut(s) | 70, 78, 240, 722, 792, 808, 1274, 1572, 1737 |
| Hpy188I | TCNGA | 9 cut(s) | 235, 298, 333, 447, 757, 951, 980, 1050, 1126 |
| Hpy8I | GTNNAC | 9 cut(s) | 70, 78, 240, 722, 792, 808, 1274, 1572, 1737 |
| HpyAV | CCTTC | 4 cut(s) | 225, 1017, 1208, 1627 |
| HpyCH4III | ACNGT | 6 cut(s) | 604, 796, 816, 882, 1576, 1676 |
| HpyCH4IV | ACGT | 1 cut(s) | 724 |
| HpyCH4V | TGCA | 8 cut(s) | 205, 572, 607, 728, 1227, 1244, 1730, 1743 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 55, 143, 211, 647, 652, 685, 1261, 1594 |
| HpySE526I | ACGT | 1 cut(s) | 724 |
| HspAI | GCGC | 4 cut(s) | 91, 226, 250, 1654 |
| Kpn2I | TCCGGA | 1 cut(s) | 525 |
| Kzo9I | GATC | 8 cut(s) | 105, 254, 784, 1045, 1237, 1444, 1549, 1693 |
| LmnI | GCTCC | 5 cut(s) | 55, 88, 175, 236, 333 |
| Lsp1109I | GCAGC | 2 cut(s) | 217, 240 |
| LweI | GCATC | 6 cut(s) | 201, 616, 675, 910, 1264, 1464 |
| MaeI | CTAG | 5 cut(s) | 200, 582, 875, 1139, 1463 |
| MaeII | ACGT | 1 cut(s) | 724 |
| MaeIII | GTNAC | 3 cut(s) | 282, 475, 1130 |
| MalI | GATC | 8 cut(s) | 107, 256, 786, 1047, 1239, 1446, 1551, 1695 |
| MboI | GATC | 8 cut(s) | 105, 254, 784, 1045, 1237, 1444, 1549, 1693 |
| MflI | RGATCY | 3 cut(s) | 254, 784, 1444 |
| MhlI | GDGCHC | 2 cut(s) | 119, 949 |
| MlsI | TGGCCA | 2 cut(s) | 641, 679 |
| MluNI | TGGCCA | 2 cut(s) | 641, 679 |
| MlyI | GAGTC | 2 cut(s) | 245, 280 |
| Mox20I | TGGCCA | 2 cut(s) | 641, 679 |
| Mph1103I | ATGCAT | 1 cut(s) | 574 |
| MroI | TCCGGA | 1 cut(s) | 525 |
| MroXI | GAANNNNTTC | 1 cut(s) | 74 |
| MscI | TGGCCA | 2 cut(s) | 641, 679 |
| MseI | TTAA | 1 cut(s) | 1508 |
| MslI | CAYNNNNRTG | 1 cut(s) | 289 |
| Msp20I | TGGCCA | 2 cut(s) | 641, 679 |
| MspA1I | CMGCKG | 3 cut(s) | 208, 500, 1249 |
| MspI | CCGG | 5 cut(s) | 263, 287, 526, 772, 1427 |
| MvnI | CGCG | 1 cut(s) | 250 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 55, 143, 211, 647, 652, 685, 1261, 1594 |
| NdeI | CATATG | 2 cut(s) | 624, 1745 |
| NdeII | GATC | 8 cut(s) | 105, 254, 784, 1045, 1237, 1444, 1549, 1693 |
| NmeAIII | GCCGAG | 1 cut(s) | 872 |
| NmuCI | GTSAC | 1 cut(s) | 282 |
| NsiI | ATGCAT | 1 cut(s) | 574 |
| NspI | RCATGY | 4 cut(s) | 163, 732, 1059, 1472 |
| PaeI | GCATGC | 1 cut(s) | 1059 |
| PagI | TCATGA | 1 cut(s) | 1678 |
| PceI | AGGCCT | 1 cut(s) | 442 |
| PciI | ACATGT | 1 cut(s) | 1468 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1122 |
| PdmI | GAANNNNTTC | 1 cut(s) | 74 |
| PfeI | GAWTC | 5 cut(s) | 422, 550, 668, 868, 1102 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1321, 1408 |
| PkrI | GCNGC | 4 cut(s) | 95, 207, 230, 1266 |
| PleI | GAGTC | 2 cut(s) | 244, 279 |
| PpsI | GAGTC | 2 cut(s) | 244, 279 |
| PscI | ACATGT | 1 cut(s) | 1468 |
| PspPI | GGNCC | 1 cut(s) | 294 |
| PstI | CTGCAG | 1 cut(s) | 1229 |
| PsuI | RGATCY | 3 cut(s) | 254, 784, 1444 |
| PvuII | CAGCTG | 3 cut(s) | 208, 500, 1249 |
| RsaI | GTAC | 4 cut(s) | 601, 700, 1473, 1736 |
| RsaNI | GTAC | 4 cut(s) | 600, 699, 1472, 1735 |
| RseI | CAYNNNNRTG | 1 cut(s) | 289 |
| SalI | GTCGAC | 1 cut(s) | 238 |
| SaqAI | TTAA | 1 cut(s) | 1508 |
| SatI | GCNGC | 4 cut(s) | 94, 206, 229, 1265 |
| Sau3AI | GATC | 8 cut(s) | 105, 254, 784, 1045, 1237, 1444, 1549, 1693 |
| Sau96I | GGNCC | 1 cut(s) | 294 |
| SchI | GAGTC | 2 cut(s) | 245, 280 |
| SduI | GDGCHC | 2 cut(s) | 119, 949 |
| SfaNI | GCATC | 6 cut(s) | 201, 616, 675, 910, 1264, 1464 |
| SfcI | CTRYAG | 1 cut(s) | 1225 |
| SinI | GGWCC | 1 cut(s) | 294 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 289 |
| SmlI | CTYRAG | 4 cut(s) | 14, 368, 1499, 1592 |
| SmoI | CTYRAG | 4 cut(s) | 14, 368, 1499, 1592 |
| SphI | GCATGC | 1 cut(s) | 1059 |
| SseBI | AGGCCT | 1 cut(s) | 442 |
| SsiI | CCGC | 5 cut(s) | 94, 144, 157, 1264, 1424 |
| SspI | AATATT | 1 cut(s) | 411 |
| SspMI | CTAG | 5 cut(s) | 200, 582, 875, 1139, 1463 |
| StuI | AGGCCT | 1 cut(s) | 442 |
| StyI | CCWWGG | 4 cut(s) | 611, 636, 680, 1407 |
| TaaI | ACNGT | 6 cut(s) | 604, 796, 816, 882, 1576, 1676 |
| TaiI | ACGT | 1 cut(s) | 727 |
| TaqI | TCGA | 9 cut(s) | 99, 132, 239, 309, 660, 666, 915, 1116, 1696 |
| TatI | WGTACW | 3 cut(s) | 599, 698, 1734 |
| TauI | GCSGC | 2 cut(s) | 96, 1267 |
| TfiI | GAWTC | 5 cut(s) | 422, 550, 668, 868, 1102 |
| Tru1I | TTAA | 1 cut(s) | 1508 |
| Tru9I | TTAA | 1 cut(s) | 1508 |
| TscAI | CASTG | 4 cut(s) | 56, 124, 609, 801 |
| TseFI | GTSAC | 1 cut(s) | 282 |
| TseI | GCWGC | 2 cut(s) | 205, 228 |
| Tsp45I | GTSAC | 1 cut(s) | 282 |
| TspDTI | ATGAA | 3 cut(s) | 375, 1347, 1719 |
| TspRI | CASTG | 4 cut(s) | 56, 124, 609, 801 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1321, 1408 |
| VpaK11BI | GGWCC | 1 cut(s) | 294 |
| XapI | RAATTY | 2 cut(s) | 1038, 1504 |
| XbaI | TCTAGA | 1 cut(s) | 581 |
| XceI | RCATGY | 4 cut(s) | 163, 732, 1059, 1472 |
| XmiI | GTMKAC | 3 cut(s) | 239, 721, 1273 |
| XmnI | GAANNNNTTC | 1 cut(s) | 74 |
| XspI | CTAG | 5 cut(s) | 200, 582, 875, 1139, 1463 |
| Zsp2I | ATGCAT | 1 cut(s) | 574 |