Rh2CG230800

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000917
Physical Location & Seq
Forward (+)
23349248 .. 23350957
1710 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG230800.1

Sequence Viewer

Length: 1449 bp
ATGTCAGAGGAGCGGCCAAGAATGGGCAAGGAAAAAGAATCTGATGTCATTGCCAACATCAGGAGGAGTTATGAAGACCTTGACGGCACGGAATTGAAGGTCTGCTTGCTTTCTTTGTCGATCTTCCCCGAAAATAATGCCATAAAGAAGAGGCCTCTAATCTACTGGTGGATAGGCGAGGGCTTCATTACATCTACCAAAGAGAAGAGAGCAGAAGAGATCGGAGAAGAAATCTTCGAAAAGCTCATGAGGAAGGACTTGATTCAACCAGGTGAAGGTGAGCCCAACTGTGAATTACTTGTCAAAAGTTGTACTATGCACCCTTGGATTCGTCGCATGTTGATATCCTTGGCCAGTGAGGCTAGGCTATTCCACTTTGATTCAATATGGCCAATGATGCCATCTTATTCCATTCCAACTTGGAGGCGCGCATGTTTAGTTTCTAAGGATCCAGTAAAAGTTGAACCAATTCCCGAGGGTGCTGAGTTGAATACTCTATTGACATTATTCAATGTAAATGTTCAATATCTTGATTTGGAACAAAAACGACTAGAGGAGTTGAAGAAGGTTGAGGTTCTTCAGCTTGGACGGTGGCAGAACTCGCCTACACATCACATTGAATTGGAACATCGAAGATCTGTTGGTGCCTCATCAGCTGAGGGAATTCTAAATGGATTGGGGGCTCAGAAGTACTTGAAGTATTTAAGCCTCCGAGGAATATCGAGAATTACCCAACTCCCTGATTCCATCTTGAGTCTTATCAGCCTCGAAATTCTCGATCTGAGAGCATGTCACGACTTAGAGAGGTTACCTTCGGATATCTCTTCACTGAAGAAGCTCACACATTTGGATGTATCGGAGTGTTTCTTACTGGAAGGCATGCCGAAAGGGCTTCAAAAACTTGCTTCCCTTCAAGTACTAAAAGGTTTTCTGATAGGAACACTGAAGAAAACTCCCTGCCGGCTTGGTGAGCTTGCCAAGTTGAAGAATCTAAGGCGGCTCAGCATACACTTGGGAAATGAGGCTTCCGTTCAACAAGGAGAATTCACAAAGCTAGAGGGTGTATCTTCTCTTCGCCACCTGAAAATATCATGGGGAGTGCTTTCTTCAAATTTCAAAAAAGATATCGACAAGGAGTCCGGGAAATTATCGTTTCCATCCAACTTAGAAAAACTTGATCTTCAAGGCCTTCCAATATCGAATTTACCAGAAGGGTTGAAGCCTAGCAAACTGAAGAAGTTAAAGAAGCTCTATATAATGGGTGGGGAACTTAATAGCTTGTCTCATGGGGAAACTAATGAGCACTGGAAAGTGGAAATCTTGCGTCTCCATTTCCTCAAAAAACTGAAATCGCCAGGCTTGGAGAGACTCAAGAGAGAGTTTCCTTGTATGCAGTACTGCGCAGTTTCAAAATTGTTGGTAGATGAGCAAAATAATGCTCCGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

482

Amino Acids

54.9

Weight (kDa)

8.98

Isoelectric Point (pI)

47.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_DRP PF23559 41 - 111 1.4e-15 Disease resistance protein Winged helix domain
LRR_R13L1-DRL21 PF25019 177 - 288 1.6e-06 R13L1/DRL21 LRRs
LRR_14 PF23598 222 - 469 1.1e-25 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1402
AccB1I GGYRCC 1 cut(s) 644
AccBSI CCGCTC 1 cut(s) 13
AccII CGCG 1 cut(s) 429
AciI CCGC 2 cut(s) 13, 997
AclWI GGATC 2 cut(s) 443, 456
AcoI YGGCCR 3 cut(s) 14, 351, 389
AcsI RAATTY 5 cut(s) 663, 771, 1043, 1111, 1201
AcuI CTGAAG 4 cut(s) 563, 851, 965, 1253
AfaI GTAC 4 cut(s) 313, 692, 918, 1397
AfiI CCNNNNNNNGG 3 cut(s) 23, 60, 275
AhdI GACNNNNNGTC 1 cut(s) 1135
AjnI CCWGG 2 cut(s) 268, 1354
AluBI AGCT 8 cut(s) 244, 583, 656, 838, 973, 1054, 1249, 1278
AluI AGCT 8 cut(s) 244, 583, 656, 838, 973, 1054, 1249, 1278
Alw21I GWGCWC 1 cut(s) 1305
Alw26I GTCTC 3 cut(s) 1287, 1331, 1360
AlwI GGATC 2 cut(s) 443, 456
Ama87I CYCGRG 1 cut(s) 473
AoxI GGCC 5 cut(s) 14, 152, 351, 389, 1186
ApoI RAATTY 5 cut(s) 663, 771, 1043, 1111, 1201
Asp700I GAANNNNTTC 1 cut(s) 468
AspLEI GCGC 3 cut(s) 429, 431, 1403
AsuC2I CCSGG 1 cut(s) 1141
AsuHPI GGTGA 3 cut(s) 284, 290, 980
AsuII TTCGAA 1 cut(s) 237
AvaI CYCGRG 1 cut(s) 473
BalI TGGCCA 2 cut(s) 353, 391
BamHI GGATCC 1 cut(s) 448
BanI GGYRCC 1 cut(s) 644
BanII GRGCYC 2 cut(s) 285, 685
BarI GAAGNNNNNNTAC 2 cut(s) 1056, 1088
BbsI GAAGAC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 1305
BbvCI CCTCAGC 1 cut(s) 657
BccI CCATC 3 cut(s) 409, 755, 1165
BceAI ACGGC 1 cut(s) 100
BcgI CGANNNNNNTGC 2 cut(s) 119, 153
BciT130I CCWGG 2 cut(s) 270, 1356
BcnI CCSGG 1 cut(s) 1141
BcoDI GTCTC 3 cut(s) 1287, 1331, 1360
BfaI CTAG 5 cut(s) 363, 551, 1055, 1224, 1447
BglI GCCNNNNNGGC 2 cut(s) 359, 889
BglII AGATCT 1 cut(s) 635
BisI GCNGC 2 cut(s) 14, 998
BlpI GCTNAGC 1 cut(s) 1001
BlsI GCNGC 2 cut(s) 15, 999
BmcAI AGTACT 3 cut(s) 692, 918, 1397
Bme1390I CCNGG 3 cut(s) 270, 1141, 1356
BmeRI GACNNNNNGTC 1 cut(s) 1135
BmeT110I CYCGRG 1 cut(s) 473
BmiI GGNNCC 2 cut(s) 450, 646
BmrFI CCNGG 3 cut(s) 270, 1141, 1356
BmsI GCATC 1 cut(s) 387
BpiI GAAGAC 1 cut(s) 81
Bpu10I CCTNAGC 1 cut(s) 657
Bpu1102I GCTNAGC 1 cut(s) 1001
Bpu14I TTCGAA 1 cut(s) 237
BpuEI CTTGAG 2 cut(s) 772, 1355
BpuMI CCSGG 1 cut(s) 1141
BsaJI CCNNGG 4 cut(s) 323, 348, 474, 712
Bsc4I CCNNNNNNNGG 3 cut(s) 23, 60, 275
Bse118I RCCGGY 1 cut(s) 960
Bse1I ACTGG 5 cut(s) 170, 354, 452, 876, 1310
Bse3DI GCAATG 1 cut(s) 48
BseBI CCWGG 2 cut(s) 270, 1356
BseDI CCNNGG 4 cut(s) 323, 348, 474, 712
BseGI GGATG 2 cut(s) 856, 1157
BseLI CCNNNNNNNGG 3 cut(s) 23, 60, 275
BseMI GCAATG 1 cut(s) 48
BseMII CTCAG 5 cut(s) 474, 648, 698, 773, 1015
BseNI ACTGG 5 cut(s) 170, 354, 452, 876, 1310
BsePI GCGCGC 1 cut(s) 427
BseRI GAGGAG 3 cut(s) 23, 79, 569
Bsh1236I CGCG 1 cut(s) 429
BshFI GGCC 5 cut(s) 16, 154, 353, 391, 1188
BshNI GGYRCC 1 cut(s) 644
BsiHKAI GWGCWC 1 cut(s) 1305
BsiHKCI CYCGRG 1 cut(s) 473
BsiSI CCGG 2 cut(s) 961, 1140
BslI CCNNNNNNNGG 3 cut(s) 23, 60, 275
BsmAI GTCTC 3 cut(s) 1287, 1331, 1360
BsmBI CGTCTC 1 cut(s) 1331
BsnI GGCC 5 cut(s) 16, 154, 353, 391, 1188
BsoBI CYCGRG 1 cut(s) 473
Bsp119I TTCGAA 1 cut(s) 237
Bsp1286I GDGCHC 3 cut(s) 285, 685, 1305
Bsp143I GATC 7 cut(s) 120, 219, 448, 635, 778, 1177, 1443
Bsp1720I GCTNAGC 1 cut(s) 1001
BspACI CCGC 2 cut(s) 13, 997
BspANI GGCC 5 cut(s) 16, 154, 353, 391, 1188
BspCNI CTCAG 5 cut(s) 475, 649, 697, 774, 1014
BspFNI CGCG 1 cut(s) 429
BspHI TCATGA 1 cut(s) 246
BspLI GGNNCC 2 cut(s) 450, 646
BspPI GGATC 2 cut(s) 443, 456
BspT104I TTCGAA 1 cut(s) 237
BspT107I GGYRCC 1 cut(s) 644
BsrBI CCGCTC 1 cut(s) 13
BsrDI GCAATG 1 cut(s) 48
BsrFI RCCGGY 1 cut(s) 960
BsrI ACTGG 5 cut(s) 170, 354, 452, 876, 1310
BssAI RCCGGY 1 cut(s) 960
BssECI CCNNGG 4 cut(s) 323, 348, 474, 712
BssHII GCGCGC 1 cut(s) 427
BssMI GATC 7 cut(s) 120, 219, 448, 635, 778, 1177, 1443
BssT1I CCWWGG 2 cut(s) 323, 348
Bst2UI CCWGG 2 cut(s) 270, 1356
Bst4CI ACNGT 2 cut(s) 290, 591
Bst6I CTCTTC 5 cut(s) 143, 200, 210, 829, 1077
BstBI TTCGAA 1 cut(s) 237
BstC8I GCNNGC 5 cut(s) 107, 429, 881, 962, 975
BstDEI CTNAG 9 cut(s) 444, 483, 657, 684, 782, 799, 992, 1001, 1165
BstEII GGTNACC 1 cut(s) 807
BstF5I GGATG 2 cut(s) 856, 1157
BstFNI CGCG 1 cut(s) 429
BstHHI GCGC 3 cut(s) 429, 431, 1403
BstKTI GATC 7 cut(s) 123, 222, 451, 638, 781, 1180, 1446
BstMAI GTCTC 3 cut(s) 1287, 1331, 1360
BstMBI GATC 7 cut(s) 120, 219, 448, 635, 778, 1177, 1443
BstMWI GCNNNNNNNGC 6 cut(s) 359, 397, 601, 653, 889, 970
BstNI CCWGG 2 cut(s) 270, 1356
BstNSI RCATGY 4 cut(s) 340, 435, 792, 883
BstPI GGTNACC 1 cut(s) 807
BstSCI CCNGG 3 cut(s) 268, 1139, 1354
BstUI CGCG 1 cut(s) 429
BstV2I GAAGAC 1 cut(s) 81
BstX2I RGATCY 2 cut(s) 448, 635
BstYI RGATCY 2 cut(s) 448, 635
BsuRI GGCC 5 cut(s) 16, 154, 353, 391, 1188
BtsCI GGATG 2 cut(s) 856, 1157
BtsIMutI CAGTG 4 cut(s) 361, 827, 941, 1303
Cac8I GCNNGC 5 cut(s) 107, 429, 881, 962, 975
CciI TCATGA 1 cut(s) 246
CfoI GCGC 3 cut(s) 429, 431, 1403
Cfr10I RCCGGY 1 cut(s) 960
CseI GACGC 1 cut(s) 1313
CsiI ACCWGGT 1 cut(s) 268
Csp6I GTAC 4 cut(s) 312, 691, 917, 1396
CviAII CATG 7 cut(s) 247, 337, 432, 789, 880, 1092, 1286
CviQI GTAC 4 cut(s) 312, 691, 917, 1396
DdeI CTNAG 9 cut(s) 444, 483, 657, 684, 782, 799, 992, 1001, 1165
DpnI GATC 7 cut(s) 122, 221, 450, 637, 780, 1179, 1445
DpnII GATC 7 cut(s) 120, 219, 448, 635, 778, 1177, 1443
DriI GACNNNNNGTC 1 cut(s) 1135
EaeI YGGCCR 3 cut(s) 14, 351, 389
Eam1104I CTCTTC 5 cut(s) 143, 200, 210, 829, 1077
Eam1105I GACNNNNNGTC 1 cut(s) 1135
EarI CTCTTC 5 cut(s) 143, 200, 210, 829, 1077
Eco130I CCWWGG 2 cut(s) 323, 348
Eco147I AGGCCT 2 cut(s) 154, 1188
Eco24I GRGCYC 2 cut(s) 285, 685
Eco32I GATATC 3 cut(s) 345, 820, 1126
Eco57I CTGAAG 4 cut(s) 563, 851, 965, 1253
Eco88I CYCGRG 1 cut(s) 473
Eco91I GGTNACC 1 cut(s) 807
EcoO65I GGTNACC 1 cut(s) 807
EcoRI GAATTC 2 cut(s) 663, 1043
EcoRII CCWGG 2 cut(s) 268, 1354
EcoRV GATATC 3 cut(s) 345, 820, 1126
EcoT14I CCWWGG 2 cut(s) 323, 348
EcoT38I GRGCYC 2 cut(s) 285, 685
ErhI CCWWGG 2 cut(s) 323, 348
Esp3I CGTCTC 1 cut(s) 1331
FaeI CATG 7 cut(s) 250, 340, 435, 792, 883, 1095, 1289
FalI AAGNNNNNCTT 2 cut(s) 89, 121
FatI CATG 7 cut(s) 246, 336, 431, 788, 879, 1091, 1285
Fnu4HI GCNGC 2 cut(s) 14, 998
FokI GGATG 2 cut(s) 863, 1144
FriOI GRGCYC 2 cut(s) 285, 685
Fsp4HI GCNGC 2 cut(s) 14, 998
FspBI CTAG 5 cut(s) 363, 551, 1055, 1224, 1447
FspI TGCGCA 1 cut(s) 1402
GlaI GCGC 3 cut(s) 428, 430, 1402
GluI GCNGC 2 cut(s) 14, 998
HaeIII GGCC 5 cut(s) 16, 154, 353, 391, 1188
HapII CCGG 2 cut(s) 961, 1140
HgaI GACGC 1 cut(s) 1313
HhaI GCGC 3 cut(s) 429, 431, 1403
Hin1II CATG 7 cut(s) 250, 340, 435, 792, 883, 1095, 1289
Hin6I GCGC 3 cut(s) 427, 429, 1401
HinP1I GCGC 3 cut(s) 427, 429, 1401
HinfI GANTC 9 cut(s) 38, 262, 328, 380, 743, 754, 988, 1136, 1368
HpaII CCGG 2 cut(s) 961, 1140
HphI GGTGA 3 cut(s) 284, 290, 980
Hpy188III TCNNGA 9 cut(s) 61, 247, 473, 530, 723, 751, 776, 794, 1372
Hpy99I CGWCG 1 cut(s) 336
HpyAV CCTTC 9 cut(s) 91, 247, 269, 559, 822, 869, 920, 1199, 1205
HpyCH4III ACNGT 2 cut(s) 290, 591
HpyCH4V TGCA 2 cut(s) 319, 1393
HpyF10VI GCNNNNNNNGC 6 cut(s) 359, 397, 601, 653, 889, 970
HpyF3I CTNAG 9 cut(s) 444, 483, 657, 684, 782, 799, 992, 1001, 1165
Hsp92II CATG 7 cut(s) 250, 340, 435, 792, 883, 1095, 1289
HspAI GCGC 3 cut(s) 427, 429, 1401
KroI GCCGGC 1 cut(s) 960
KroNI GCCGGC 1 cut(s) 962
Kzo9I GATC 7 cut(s) 120, 219, 448, 635, 778, 1177, 1443
LmnI GCTCC 2 cut(s) 10, 1444
LweI GCATC 1 cut(s) 387
MabI ACCWGGT 1 cut(s) 268
MaeI CTAG 5 cut(s) 363, 551, 1055, 1224, 1447
MaeIII GTNAC 2 cut(s) 791, 807
MalI GATC 7 cut(s) 122, 221, 450, 637, 780, 1179, 1445
MbiI CCGCTC 1 cut(s) 13
MboI GATC 7 cut(s) 120, 219, 448, 635, 778, 1177, 1443
MflI RGATCY 2 cut(s) 448, 635
MhlI GDGCHC 3 cut(s) 285, 685, 1305
MlsI TGGCCA 2 cut(s) 353, 391
MluNI TGGCCA 2 cut(s) 353, 391
MlyI GAGTC 3 cut(s) 763, 1145, 1362
MmeI TCCRAC 2 cut(s) 440, 1185
Mox20I TGGCCA 2 cut(s) 353, 391
MroNI GCCGGC 1 cut(s) 960
MroXI GAANNNNTTC 1 cut(s) 468
MscI TGGCCA 2 cut(s) 353, 391
MseI TTAA 3 cut(s) 704, 1241, 1272
MslI CAYNNNNRTG 1 cut(s) 849
Msp20I TGGCCA 2 cut(s) 353, 391
MspA1I CMGCKG 1 cut(s) 656
MspI CCGG 2 cut(s) 961, 1140
MspR9I CCNGG 3 cut(s) 270, 1141, 1356
MvaI CCWGG 2 cut(s) 270, 1356
MvnI CGCG 1 cut(s) 429
MwoI GCNNNNNNNGC 6 cut(s) 359, 397, 601, 653, 889, 970
NaeI GCCGGC 1 cut(s) 962
NciI CCSGG 1 cut(s) 1141
NdeII GATC 7 cut(s) 120, 219, 448, 635, 778, 1177, 1443
NgoMIV GCCGGC 1 cut(s) 960
NlaIII CATG 7 cut(s) 250, 340, 435, 792, 883, 1095, 1289
NlaIV GGNNCC 2 cut(s) 450, 646
NmuCI GTSAC 1 cut(s) 791
NsbI TGCGCA 1 cut(s) 1402
NspI RCATGY 4 cut(s) 340, 435, 792, 883
NspV TTCGAA 1 cut(s) 237
PaeI GCATGC 1 cut(s) 883
PagI TCATGA 1 cut(s) 246
PauI GCGCGC 1 cut(s) 427
PceI AGGCCT 2 cut(s) 154, 1188
PcsI WCGNNNNNNNCGW 1 cut(s) 774
PdiI GCCGGC 1 cut(s) 962
PdmI GAANNNNTTC 1 cut(s) 468
PfeI GAWTC 6 cut(s) 38, 262, 328, 380, 743, 988
PfoI TCCNGGA 1 cut(s) 1139
PkrI GCNGC 2 cut(s) 15, 999
PleI GAGTC 3 cut(s) 762, 1144, 1362
PpsI GAGTC 3 cut(s) 762, 1144, 1362
Psp6I CCWGG 2 cut(s) 268, 1354
PspEI GGTNACC 1 cut(s) 807
PspGI CCWGG 2 cut(s) 268, 1354
PspN4I GGNNCC 2 cut(s) 450, 646
PsuI RGATCY 2 cut(s) 448, 635
PteI GCGCGC 1 cut(s) 427
PvuII CAGCTG 1 cut(s) 656
RsaI GTAC 4 cut(s) 313, 692, 918, 1397
RsaNI GTAC 4 cut(s) 312, 691, 917, 1396
RseI CAYNNNNRTG 1 cut(s) 849
SaqAI TTAA 3 cut(s) 704, 1241, 1272
SatI GCNGC 2 cut(s) 14, 998
Sau3AI GATC 7 cut(s) 120, 219, 448, 635, 778, 1177, 1443
ScaI AGTACT 3 cut(s) 692, 918, 1397
SchI GAGTC 3 cut(s) 763, 1145, 1362
ScrFI CCNGG 3 cut(s) 270, 1141, 1356
SduI GDGCHC 3 cut(s) 285, 685, 1305
SexAI ACCWGGT 1 cut(s) 268
SfaNI GCATC 1 cut(s) 387
SfuI TTCGAA 1 cut(s) 237
SmiMI CAYNNNNRTG 1 cut(s) 849
SmlI CTYRAG 2 cut(s) 751, 1370
SmoI CTYRAG 2 cut(s) 751, 1370
SphI GCATGC 1 cut(s) 883
SseBI AGGCCT 2 cut(s) 154, 1188
SsiI CCGC 2 cut(s) 13, 997
SspMI CTAG 5 cut(s) 363, 551, 1055, 1224, 1447
StuI AGGCCT 2 cut(s) 154, 1188
StyD4I CCNGG 3 cut(s) 268, 1139, 1354
StyI CCWWGG 2 cut(s) 323, 348
TaaI ACNGT 2 cut(s) 290, 591
TaqI TCGA 8 cut(s) 119, 237, 631, 722, 768, 777, 1128, 1199
TatI WGTACW 4 cut(s) 311, 690, 916, 1395
TauI GCSGC 2 cut(s) 16, 1000
TfiI GAWTC 6 cut(s) 38, 262, 328, 380, 743, 988
Tru1I TTAA 3 cut(s) 704, 1241, 1272
Tru9I TTAA 3 cut(s) 704, 1241, 1272
TscAI CASTG 4 cut(s) 361, 834, 948, 1310
TseFI GTSAC 1 cut(s) 791
Tsp45I GTSAC 1 cut(s) 791
TspDTI ATGAA 2 cut(s) 87, 175
TspGWI ACGGA 2 cut(s) 104, 1018
TspRI CASTG 4 cut(s) 361, 834, 948, 1310
XapI RAATTY 5 cut(s) 663, 771, 1043, 1111, 1201
XceI RCATGY 4 cut(s) 340, 435, 792, 883
XmnI GAANNNNTTC 1 cut(s) 468
XspI CTAG 5 cut(s) 363, 551, 1055, 1224, 1447
ZrmI AGTACT 3 cut(s) 692, 918, 1397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.