Rmu_sc0004286.1_g000015

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004286.1
OG0000917
Physical Location & Seq
Reverse (-)
47893 .. 49371
1479 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004286.1_g000015.1.cds

Sequence Viewer

Length: 1479 bp
atggcaaattccgaggtggagttggctgatccacctgaggaaaggtcacaagatcagcggaaactgagcgcggaggcaattttcgataaaagtgaggccatggccaacataaggaggagttatggagatcttcggggcacggaattgaaggtctgtctactttctttctcaatcttccctgagggttctaagataagaaagaggcctctaatttactggtggatcggcgagggcttcatcacggctaccaaagagaagacagcagaggagatgggagaagacatctttgcaaaactcttgagaaaggacttgattcaaccagctccaggtgagtccaactgtgaattacttgtcaaaaattgttgcgttcacccttggattcgtcgtatgttgatctccttggctagagaggctaggctgttcaacttcgatcccgaatggccaatgatgccatctgattctatatcgacttgtaggcgttcatgtttagtttctaaggaggatatgtcaataactcctcagggtgatgatcagttgaaaaatctgttgacagtattcaatgtaaacgttcagtatcttaatttgaaacaagaatggctcgacaagttgaagagggttgaagttcttcactttggacggtggcagagcgaccccaaatatcacattgaagtggatcagaaaacatttgatggttcacaagctgtatcgtttctaaatggtttgggagctcagaaacacttgaagtatcttagcctcagaggaatatcaagaattagtgaactccctgcttctattcgtagtcttatcagccttgaaattctcgatctgagagcatgccatgacttggagaggttgccttcagacatctcatcattgaagaagctcacgcatttggatgtatcagagtgttacttactagaaggcatgcccaaagggcttcacaaactttcttccctgcaagtactaaaaggttttctgataggatcacaggaaaaaactcccaccaaacttggtgaacttgcgacattgaagaagctaaggaggctcagcatacacattgggaatggggctgcaattcaagcagtggagttcaaaaagttgaaagatatgtcatctcttcgcttcctcaaggtatcatggggagtggtttctaaaaatttgacagagggtattgaagatgagtccttgaaattcttgtttccagagaatttagaaaaattggatcttcaaggctttcccctagcacatgcaccagaagggttgaaccctagcaaactgaaaaatttaaagaagctctatataaggggtggggaacttgagagcttggatcatggggaaaatgagccatggaaagtggaaatcttgcgtctcgagtacttgaagaagttcaaaaacgcagacgaagaagtgaggagaaattttcctcatcggaagtactggacagtgaagaacctcagtgaagctgaggctaggaggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

492

Amino Acids

56.36

Weight (kDa)

8.77

Isoelectric Point (pI)

51.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 844
AccI GTMKAC 1 cut(s) 157
AccII CGCG 1 cut(s) 71
AciI CCGC 2 cut(s) 58, 71
AclI AACGTT 1 cut(s) 567
AclWI GGATC 7 cut(s) 23, 230, 425, 681, 991, 1230, 1335
AcoI YGGCCR 2 cut(s) 102, 440
AcsI RAATTY 7 cut(s) 7, 816, 1156, 1190, 1207, 1282, 1417
AcuI CTGAAG 1 cut(s) 843
AfaI GTAC 3 cut(s) 963, 1376, 1436
AfiI CCNNNNNNNGG 3 cut(s) 111, 326, 844
AjnI CCWGG 1 cut(s) 325
AluBI AGCT 8 cut(s) 323, 701, 728, 883, 1036, 1294, 1323, 1463
AluI AGCT 8 cut(s) 323, 701, 728, 883, 1036, 1294, 1323, 1463
Alw21I GWGCWC 1 cut(s) 730
Alw26I GTCTC 1 cut(s) 1373
AlwI GGATC 7 cut(s) 23, 230, 425, 681, 991, 1230, 1335
Ama87I CYCGRG 1 cut(s) 1370
AoxI GGCC 4 cut(s) 96, 102, 203, 440
ApeKI GCWGC 1 cut(s) 1070
ApoI RAATTY 7 cut(s) 7, 816, 1156, 1190, 1207, 1282, 1417
Asp700I GAANNNNTTC 2 cut(s) 624, 1385
AspLEI GCGC 1 cut(s) 71
AsuHPI GGTGA 4 cut(s) 341, 362, 536, 1025
AvaI CYCGRG 1 cut(s) 1370
AxyI CCTNAGG 3 cut(s) 36, 180, 519
BaeGI GKGCMC 1 cut(s) 140
BalI TGGCCA 2 cut(s) 104, 442
BanII GRGCYC 1 cut(s) 730
BbsI GAAGAC 2 cut(s) 263, 285
Bbv12I GWGCWC 1 cut(s) 730
BbvCI CCTCAGC 1 cut(s) 1464
BbvI GCAGC 1 cut(s) 1057
BccI CCATC 3 cut(s) 265, 460, 683
BceAI ACGGC 1 cut(s) 258
BciT130I CCWGG 1 cut(s) 327
BclI TGATCA 1 cut(s) 529
BcoDI GTCTC 1 cut(s) 1373
BfaI CTAG 6 cut(s) 405, 414, 917, 1241, 1269, 1470
BglI GCCNNNNNGGC 1 cut(s) 934
BglII AGATCT 1 cut(s) 127
BisI GCNGC 1 cut(s) 1071
BlpI GCTNAGC 1 cut(s) 1046
BlsI GCNGC 1 cut(s) 1072
BmcAI AGTACT 3 cut(s) 963, 1376, 1436
Bme1390I CCNGG 1 cut(s) 327
BmeT110I CYCGRG 1 cut(s) 1370
BmrFI CCNGG 1 cut(s) 327
BmsI GCATC 1 cut(s) 438
BpiI GAAGAC 2 cut(s) 263, 285
BpmI CTGGAG 1 cut(s) 309
Bpu10I CCTNAGC 2 cut(s) 1037, 1464
Bpu1102I GCTNAGC 1 cut(s) 1046
BpuEI CTTGAG 3 cut(s) 319, 1112, 1337
BsaJI CCNNGG 5 cut(s) 12, 99, 374, 399, 1346
BsaXI ACNNNNNCTCC 2 cut(s) 491, 521
Bsc4I CCNNNNNNNGG 3 cut(s) 111, 326, 844
Bse1I ACTGG 2 cut(s) 221, 1442
Bse21I CCTNAGG 3 cut(s) 36, 180, 519
BseBI CCWGG 1 cut(s) 327
BseDI CCNNGG 5 cut(s) 12, 99, 374, 399, 1346
BseGI GGATG 1 cut(s) 901
BseLI CCNNNNNNNGG 3 cut(s) 111, 326, 844
BseNI ACTGG 2 cut(s) 221, 1442
BseRI GAGGAG 4 cut(s) 130, 281, 507, 1426
BseSI GKGCMC 1 cut(s) 140
BseXI GCAGC 1 cut(s) 1057
Bsh1236I CGCG 1 cut(s) 71
BshFI GGCC 4 cut(s) 98, 104, 205, 442
BsiHKAI GWGCWC 1 cut(s) 730
BsiHKCI CYCGRG 1 cut(s) 1370
BslI CCNNNNNNNGG 3 cut(s) 111, 326, 844
BsmAI GTCTC 1 cut(s) 1373
BsmBI CGTCTC 1 cut(s) 1373
BsnI GGCC 4 cut(s) 98, 104, 205, 442
BsoBI CYCGRG 1 cut(s) 1370
Bsp1286I GDGCHC 2 cut(s) 140, 730
Bsp1720I GCTNAGC 1 cut(s) 1046
Bsp19I CCATGG 2 cut(s) 99, 1346
BspACI CCGC 2 cut(s) 58, 71
BspANI GGCC 4 cut(s) 98, 104, 205, 442
BspFNI CGCG 1 cut(s) 71
BspPI GGATC 7 cut(s) 23, 230, 425, 681, 991, 1230, 1335
BsrI ACTGG 2 cut(s) 221, 1442
BssECI CCNNGG 5 cut(s) 12, 99, 374, 399, 1346
BssT1I CCWWGG 4 cut(s) 99, 374, 399, 1346
Bst2UI CCWGG 1 cut(s) 327
Bst4CI ACNGT 4 cut(s) 341, 553, 639, 1444
Bst6I CTCTTC 2 cut(s) 605, 1122
BstC8I GCNNGC 2 cut(s) 835, 926
BstDSI CCRYGG 2 cut(s) 99, 1346
BstF5I GGATG 1 cut(s) 901
BstFNI CGCG 1 cut(s) 71
BstHHI GCGC 1 cut(s) 71
BstMAI GTCTC 1 cut(s) 1373
BstMWI GCNNNNNNNGC 5 cut(s) 410, 448, 934, 1042, 1079
BstNI CCWGG 1 cut(s) 327
BstNSI RCATGY 3 cut(s) 837, 928, 1250
BstSCI CCNGG 1 cut(s) 325
BstSLI GKGCMC 1 cut(s) 140
BstUI CGCG 1 cut(s) 71
BstV1I GCAGC 1 cut(s) 1057
BstV2I GAAGAC 2 cut(s) 263, 285
BstX2I RGATCY 2 cut(s) 127, 1222
BstYI RGATCY 2 cut(s) 127, 1222
Bsu36I CCTNAGG 3 cut(s) 36, 180, 519
BsuRI GGCC 4 cut(s) 98, 104, 205, 442
BtgI CCRYGG 2 cut(s) 99, 1346
BtsCI GGATG 1 cut(s) 901
BtsI GCAGTG 1 cut(s) 1089
BtsIMutI CAGTG 3 cut(s) 1089, 1449, 1462
Cac8I GCNNGC 2 cut(s) 835, 926
CfoI GCGC 1 cut(s) 71
CseI GACGC 1 cut(s) 1355
Csp6I GTAC 3 cut(s) 962, 1375, 1435
CspCI CAANNNNNGTGG 2 cut(s) 991, 1026
CviAII CATG 9 cut(s) 100, 483, 834, 839, 925, 1137, 1247, 1331, 1347
CviQI GTAC 3 cut(s) 962, 1375, 1435
DraI TTTAAA 1 cut(s) 1287
EaeI YGGCCR 2 cut(s) 102, 440
Eam1104I CTCTTC 2 cut(s) 605, 1122
EarI CTCTTC 2 cut(s) 605, 1122
Ecl136II GAGCTC 1 cut(s) 728
Eco130I CCWWGG 4 cut(s) 99, 374, 399, 1346
Eco147I AGGCCT 1 cut(s) 205
Eco24I GRGCYC 1 cut(s) 730
Eco53kI GAGCTC 1 cut(s) 728
Eco57I CTGAAG 1 cut(s) 843
Eco81I CCTNAGG 3 cut(s) 36, 180, 519
Eco88I CYCGRG 1 cut(s) 1370
EcoICRI GAGCTC 1 cut(s) 728
EcoRII CCWGG 1 cut(s) 325
EcoT14I CCWWGG 4 cut(s) 99, 374, 399, 1346
EcoT38I GRGCYC 1 cut(s) 730
ErhI CCWWGG 4 cut(s) 99, 374, 399, 1346
Esp3I CGTCTC 1 cut(s) 1373
FaeI CATG 9 cut(s) 103, 486, 837, 842, 928, 1140, 1250, 1334, 1350
FatI CATG 9 cut(s) 99, 482, 833, 838, 924, 1136, 1246, 1330, 1346
FbaI TGATCA 1 cut(s) 529
FblI GTMKAC 1 cut(s) 157
Fnu4HI GCNGC 1 cut(s) 1071
FokI GGATG 1 cut(s) 908
FriOI GRGCYC 1 cut(s) 730
Fsp4HI GCNGC 1 cut(s) 1071
FspBI CTAG 6 cut(s) 405, 414, 917, 1241, 1269, 1470
GlaI GCGC 1 cut(s) 70
GluI GCNGC 1 cut(s) 1071
GsuI CTGGAG 1 cut(s) 309
HaeIII GGCC 4 cut(s) 98, 104, 205, 442
HgaI GACGC 1 cut(s) 1355
HhaI GCGC 1 cut(s) 71
Hin1II CATG 9 cut(s) 103, 486, 837, 842, 928, 1140, 1250, 1334, 1350
Hin6I GCGC 1 cut(s) 69
HinP1I GCGC 1 cut(s) 69
HincII GTYRAC 1 cut(s) 549
HindII GTYRAC 1 cut(s) 549
HinfI GANTC 5 cut(s) 313, 332, 379, 458, 1181
HphI GGTGA 4 cut(s) 341, 362, 536, 1025
Hpy166II GTNNAC 7 cut(s) 158, 370, 549, 565, 695, 779, 1016
Hpy188III TCNNGA 6 cut(s) 298, 434, 768, 821, 1202, 1370
Hpy8I GTNNAC 7 cut(s) 158, 370, 549, 565, 695, 779, 1016
Hpy99I CGWCG 1 cut(s) 387
HpyAV CCTTC 4 cut(s) 142, 867, 914, 1250
HpyCH4III ACNGT 4 cut(s) 341, 553, 639, 1444
HpyCH4IV ACGT 1 cut(s) 567
HpyCH4V TGCA 4 cut(s) 290, 958, 1073, 1250
HpyF10VI GCNNNNNNNGC 5 cut(s) 410, 448, 934, 1042, 1079
HpySE526I ACGT 1 cut(s) 567
Hsp92II CATG 9 cut(s) 103, 486, 837, 842, 928, 1140, 1250, 1334, 1350
HspAI GCGC 1 cut(s) 69
Ksp22I TGATCA 1 cut(s) 529
LmnI GCTCC 2 cut(s) 328, 725
Lsp1109I GCAGC 1 cut(s) 1057
LweI GCATC 1 cut(s) 438
MaeI CTAG 6 cut(s) 405, 414, 917, 1241, 1269, 1470
MaeII ACGT 1 cut(s) 567
MaeIII GTNAC 2 cut(s) 45, 908
MflI RGATCY 2 cut(s) 127, 1222
MhlI GDGCHC 2 cut(s) 140, 730
MlsI TGGCCA 2 cut(s) 104, 442
MluNI TGGCCA 2 cut(s) 104, 442
MlyI GAGTC 2 cut(s) 341, 1190
MmeI TCCRAC 1 cut(s) 360
Mox20I TGGCCA 2 cut(s) 104, 442
MroXI GAANNNNTTC 2 cut(s) 624, 1385
MscI TGGCCA 2 cut(s) 104, 442
MseI TTAA 2 cut(s) 579, 1286
MslI CAYNNNNRTG 2 cut(s) 668, 894
Msp20I TGGCCA 2 cut(s) 104, 442
MspA1I CMGCKG 1 cut(s) 58
MspR9I CCNGG 1 cut(s) 327
MvaI CCWGG 1 cut(s) 327
MvnI CGCG 1 cut(s) 71
MwoI GCNNNNNNNGC 5 cut(s) 410, 448, 934, 1042, 1079
NcoI CCATGG 2 cut(s) 99, 1346
NlaIII CATG 9 cut(s) 103, 486, 837, 842, 928, 1140, 1250, 1334, 1350
NmuCI GTSAC 1 cut(s) 45
NspI RCATGY 3 cut(s) 837, 928, 1250
PaeI GCATGC 2 cut(s) 837, 928
PaeR7I CTCGAG 1 cut(s) 1370
PceI AGGCCT 1 cut(s) 205
PdmI GAANNNNTTC 2 cut(s) 624, 1385
PfeI GAWTC 3 cut(s) 313, 379, 458
PflMI CCANNNNNTGG 1 cut(s) 844
PkrI GCNGC 1 cut(s) 1072
PleI GAGTC 2 cut(s) 340, 1189
PpsI GAGTC 2 cut(s) 340, 1189
Psp124BI GAGCTC 1 cut(s) 730
Psp1406I AACGTT 1 cut(s) 567
Psp6I CCWGG 1 cut(s) 325
PspGI CCWGG 1 cut(s) 325
PsuI RGATCY 2 cut(s) 127, 1222
RsaI GTAC 3 cut(s) 963, 1376, 1436
RsaNI GTAC 3 cut(s) 962, 1375, 1435
RseI CAYNNNNRTG 2 cut(s) 668, 894
SacI GAGCTC 1 cut(s) 730
SaqAI TTAA 2 cut(s) 579, 1286
SatI GCNGC 1 cut(s) 1071
ScaI AGTACT 3 cut(s) 963, 1376, 1436
SchI GAGTC 2 cut(s) 341, 1190
ScrFI CCNGG 1 cut(s) 327
SduI GDGCHC 2 cut(s) 140, 730
SfaNI GCATC 1 cut(s) 438
Sfr274I CTCGAG 1 cut(s) 1370
SlaI CTCGAG 1 cut(s) 1370
SmiMI CAYNNNNRTG 2 cut(s) 668, 894
SmlI CTYRAG 4 cut(s) 298, 1127, 1316, 1370
SmoI CTYRAG 4 cut(s) 298, 1127, 1316, 1370
SphI GCATGC 2 cut(s) 837, 928
SseBI AGGCCT 1 cut(s) 205
SsiI CCGC 2 cut(s) 58, 71
SspMI CTAG 6 cut(s) 405, 414, 917, 1241, 1269, 1470
SstI GAGCTC 1 cut(s) 730
StuI AGGCCT 1 cut(s) 205
StyD4I CCNGG 1 cut(s) 325
StyI CCWWGG 4 cut(s) 99, 374, 399, 1346
TaaI ACNGT 4 cut(s) 341, 553, 639, 1444
TaiI ACGT 1 cut(s) 570
TaqI TCGA 6 cut(s) 84, 429, 467, 600, 822, 1371
TatI WGTACW 3 cut(s) 961, 1374, 1434
TfiI GAWTC 3 cut(s) 313, 379, 458
Tru1I TTAA 2 cut(s) 579, 1286
Tru9I TTAA 2 cut(s) 579, 1286
TscAI CASTG 3 cut(s) 1089, 1449, 1462
TseFI GTSAC 1 cut(s) 45
TseI GCWGC 1 cut(s) 1070
Tsp45I GTSAC 1 cut(s) 45
TspDTI ATGAA 2 cut(s) 226, 471
TspGWI ACGGA 1 cut(s) 155
TspRI CASTG 3 cut(s) 1089, 1449, 1462
Van91I CCANNNNNTGG 1 cut(s) 844
XapI RAATTY 7 cut(s) 7, 816, 1156, 1190, 1207, 1282, 1417
XceI RCATGY 3 cut(s) 837, 928, 1250
XhoI CTCGAG 1 cut(s) 1370
XmiI GTMKAC 1 cut(s) 157
XmnI GAANNNNTTC 2 cut(s) 624, 1385
XspI CTAG 6 cut(s) 405, 414, 917, 1241, 1269, 1470
ZrmI AGTACT 3 cut(s) 963, 1376, 1436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.