Rmu_sc0008578.1_g000006

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008578.1
OG0000917
Physical Location & Seq
Reverse (-)
30757 .. 31500
744 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008578.1_g000006.1.cds

Sequence Viewer

Length: 744 bp
atgttcttccctctctcttgttctcttctccaaaatgctgggctttcagagagtacaaagacccaattacatagtcttctttttgggtctgttcttcctttcacatttgtgcaatgcttagcagaggagataggagaagacatctttgcaaaactcttgagaaaggacttgattcaaccagcttcaggtcagtccaactgtgaattagttgtgaaaaattgttgtgttcacccttggattcgtcgtatgttgatctccttggctagagaggctaagctgttcgacttcgatcccaaatggccaatgatgccatttggttctatatcaacttgtaggcgttcatgtttagtttctaaggagggtaagtcaataactcctcatggtgatgatcaattgaaaaatctattgacagtattcaatgtaaacgttaaatatcttgatttgaaacaagaatggctcgacaggttgaagagggttgaagttcttcactttggacggtggcagagctcccccaaatatcacattgaagtggatcagaaaacatttgatggttcacaagctgtatcgtttctaaatggtttgggagctcagaaacacttgaagtatcttaattatccaactgcaaaatcgaaaacaaaatccaagtacaaagtcgagactcgggaggagattacaatccaaaatcccaaatcgaatagcagattgctcattgctatacaagaacttttcttccaatttcagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

247

Amino Acids

28.36

Weight (kDa)

9.2

Isoelectric Point (pI)

47.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 426
AclWI GGATC 2 cut(s) 284, 540
AcoI YGGCCR 1 cut(s) 299
AcuI CTGAAG 1 cut(s) 168
AfaI GTAC 2 cut(s) 55, 647
AfiI CCNNNNNNNGG 1 cut(s) 185
AgsI TTSAA 8 cut(s) 176, 397, 418, 445, 469, 479, 527, 601
AleI CACNNNNGTG 1 cut(s) 107
AloI GAACNNNNNNTCC 1 cut(s) 714
AluBI AGCT 5 cut(s) 182, 277, 507, 560, 587
AluI AGCT 5 cut(s) 182, 277, 507, 560, 587
Alw21I GWGCWC 2 cut(s) 509, 589
Alw26I GTCTC 1 cut(s) 650
AlwI GGATC 2 cut(s) 284, 540
Ama87I CYCGRG 1 cut(s) 660
AoxI GGCC 1 cut(s) 299
Asp700I GAANNNNTTC 1 cut(s) 483
AsuHPI GGTGA 2 cut(s) 221, 395
AvaI CYCGRG 1 cut(s) 660
BalI TGGCCA 1 cut(s) 301
BanII GRGCYC 2 cut(s) 509, 589
BbsI GAAGAC 2 cut(s) 68, 144
Bbv12I GWGCWC 2 cut(s) 509, 589
BccI CCATC 1 cut(s) 542
BclI TGATCA 1 cut(s) 388
BcoDI GTCTC 1 cut(s) 650
BfaI CTAG 1 cut(s) 264
BlpI GCTNAGC 2 cut(s) 118, 273
BmeT110I CYCGRG 1 cut(s) 660
BmsI GCATC 1 cut(s) 297
BpiI GAAGAC 2 cut(s) 68, 144
Bpu1102I GCTNAGC 2 cut(s) 118, 273
BpuEI CTTGAG 1 cut(s) 178
BsaBI GATNNNNATC 1 cut(s) 674
BsaJI CCNNGG 2 cut(s) 233, 258
BsaXI ACNNNNNCTCC 2 cut(s) 350, 380
Bsc4I CCNNNNNNNGG 1 cut(s) 185
Bse3DI GCAATG 2 cut(s) 119, 708
Bse8I GATNNNNATC 1 cut(s) 674
BseDI CCNNGG 2 cut(s) 233, 258
BseJI GATNNNNATC 1 cut(s) 674
BseLI CCNNNNNNNGG 1 cut(s) 185
BseMI GCAATG 2 cut(s) 119, 708
BseMII CTCAG 1 cut(s) 602
BseRI GAGGAG 3 cut(s) 140, 366, 680
BseYI CCCAGC 1 cut(s) 38
BshFI GGCC 1 cut(s) 301
BsiHKAI GWGCWC 2 cut(s) 509, 589
BsiHKCI CYCGRG 1 cut(s) 660
BslI CCNNNNNNNGG 1 cut(s) 185
BsmAI GTCTC 1 cut(s) 650
BsnI GGCC 1 cut(s) 301
BsoBI CYCGRG 1 cut(s) 660
Bsp1286I GDGCHC 2 cut(s) 509, 589
Bsp143I GATC 4 cut(s) 252, 289, 388, 532
Bsp1720I GCTNAGC 2 cut(s) 118, 273
BspANI GGCC 1 cut(s) 301
BspCNI CTCAG 1 cut(s) 601
BspPI GGATC 2 cut(s) 284, 540
BsrDI GCAATG 2 cut(s) 119, 708
BssECI CCNNGG 2 cut(s) 233, 258
BssMI GATC 4 cut(s) 252, 289, 388, 532
BssT1I CCWWGG 2 cut(s) 233, 258
Bst4CI ACNGT 3 cut(s) 200, 412, 498
Bst6I CTCTTC 2 cut(s) 30, 464
BstDEI CTNAG 4 cut(s) 118, 273, 354, 588
BstKTI GATC 4 cut(s) 255, 292, 391, 535
BstMAI GTCTC 1 cut(s) 650
BstMBI GATC 4 cut(s) 252, 289, 388, 532
BstMWI GCNNNNNNNGC 2 cut(s) 269, 307
BstV2I GAAGAC 2 cut(s) 68, 144
BstXI CCANNNNNNTGG 1 cut(s) 38
BsuRI GGCC 1 cut(s) 301
Csp6I GTAC 2 cut(s) 54, 646
CviAII CATG 2 cut(s) 342, 380
CviQI GTAC 2 cut(s) 54, 646
DdeI CTNAG 4 cut(s) 118, 273, 354, 588
DpnI GATC 4 cut(s) 254, 291, 390, 534
DpnII GATC 4 cut(s) 252, 289, 388, 532
EaeI YGGCCR 1 cut(s) 299
Eam1104I CTCTTC 2 cut(s) 30, 464
EarI CTCTTC 2 cut(s) 30, 464
Ecl136II GAGCTC 2 cut(s) 507, 587
Eco130I CCWWGG 2 cut(s) 233, 258
Eco24I GRGCYC 2 cut(s) 509, 589
Eco53kI GAGCTC 2 cut(s) 507, 587
Eco57I CTGAAG 1 cut(s) 168
Eco88I CYCGRG 1 cut(s) 660
EcoICRI GAGCTC 2 cut(s) 507, 587
EcoT14I CCWWGG 2 cut(s) 233, 258
EcoT38I GRGCYC 2 cut(s) 509, 589
ErhI CCWWGG 2 cut(s) 233, 258
FaeI CATG 2 cut(s) 345, 383
FaiI YATR 6 cut(s) 72, 248, 323, 343, 381, 716
FatI CATG 2 cut(s) 341, 379
FbaI TGATCA 1 cut(s) 388
FriOI GRGCYC 2 cut(s) 509, 589
FspBI CTAG 1 cut(s) 264
GsaI CCCAGC 1 cut(s) 42
HaeIII GGCC 1 cut(s) 301
Hin1II CATG 2 cut(s) 345, 383
HinfI GANTC 3 cut(s) 172, 238, 658
HphI GGTGA 2 cut(s) 221, 395
Hpy166II GTNNAC 3 cut(s) 229, 424, 554
Hpy188I TCNGA 3 cut(s) 49, 537, 591
Hpy188III TCNNGA 4 cut(s) 157, 437, 655, 662
Hpy8I GTNNAC 3 cut(s) 229, 424, 554
Hpy99I CGWCG 1 cut(s) 246
HpyCH4III ACNGT 3 cut(s) 200, 412, 498
HpyCH4IV ACGT 1 cut(s) 426
HpyCH4V TGCA 3 cut(s) 112, 149, 623
HpyF10VI GCNNNNNNNGC 2 cut(s) 269, 307
HpyF3I CTNAG 4 cut(s) 118, 273, 354, 588
HpySE526I ACGT 1 cut(s) 426
Hsp92II CATG 2 cut(s) 345, 383
Ksp22I TGATCA 1 cut(s) 388
Kzo9I GATC 4 cut(s) 252, 289, 388, 532
LmnI GCTCC 2 cut(s) 512, 584
LpnPI CCDG 4 cut(s) 24, 171, 192, 448
LweI GCATC 1 cut(s) 297
MaeI CTAG 1 cut(s) 264
MaeII ACGT 1 cut(s) 426
MalI GATC 4 cut(s) 254, 291, 390, 534
MboI GATC 4 cut(s) 252, 289, 388, 532
MboII GAAGA 7 cut(s) 17, 68, 86, 149, 476, 481, 721
MfeI CAATTG 1 cut(s) 392
MhlI GDGCHC 2 cut(s) 509, 589
MlsI TGGCCA 1 cut(s) 301
MluCI AATT 6 cut(s) 65, 203, 217, 392, 610, 734
MluNI TGGCCA 1 cut(s) 301
MlyI GAGTC 1 cut(s) 652
MmeI TCCRAC 2 cut(s) 219, 641
MnlI CCTC 7 cut(s) 21, 118, 262, 352, 387, 465, 658
Mox20I TGGCCA 1 cut(s) 301
MroXI GAANNNNTTC 1 cut(s) 483
MscI TGGCCA 1 cut(s) 301
MseI TTAA 2 cut(s) 429, 609
MslI CAYNNNNRTG 3 cut(s) 107, 384, 527
Msp20I TGGCCA 1 cut(s) 301
MunI CAATTG 1 cut(s) 392
MwoI GCNNNNNNNGC 2 cut(s) 269, 307
NdeII GATC 4 cut(s) 252, 289, 388, 532
NlaIII CATG 2 cut(s) 345, 383
OliI CACNNNNGTG 1 cut(s) 107
PdmI GAANNNNTTC 1 cut(s) 483
PfeI GAWTC 2 cut(s) 172, 238
PleI GAGTC 1 cut(s) 652
PpsI GAGTC 1 cut(s) 652
Psp124BI GAGCTC 2 cut(s) 509, 589
Psp1406I AACGTT 1 cut(s) 426
PspFI CCCAGC 1 cut(s) 38
RsaI GTAC 2 cut(s) 55, 647
RsaNI GTAC 2 cut(s) 54, 646
RseI CAYNNNNRTG 3 cut(s) 107, 384, 527
SacI GAGCTC 2 cut(s) 509, 589
SaqAI TTAA 2 cut(s) 429, 609
Sau3AI GATC 4 cut(s) 252, 289, 388, 532
SchI GAGTC 1 cut(s) 652
SduI GDGCHC 2 cut(s) 509, 589
SetI ASST 8 cut(s) 184, 190, 279, 429, 467, 509, 562, 589
SfaNI GCATC 1 cut(s) 297
SmiMI CAYNNNNRTG 3 cut(s) 107, 384, 527
SmlI CTYRAG 1 cut(s) 157
SmoI CTYRAG 1 cut(s) 157
Sse9I AATT 6 cut(s) 65, 203, 217, 392, 610, 734
SspMI CTAG 1 cut(s) 264
SstI GAGCTC 2 cut(s) 509, 589
StyI CCWWGG 2 cut(s) 233, 258
TaaI ACNGT 3 cut(s) 200, 412, 498
TaiI ACGT 1 cut(s) 429
TaqI TCGA 6 cut(s) 282, 288, 459, 629, 654, 692
TasI AATT 6 cut(s) 65, 203, 217, 392, 610, 734
TatI WGTACW 2 cut(s) 53, 645
TfiI GAWTC 2 cut(s) 172, 238
Tru1I TTAA 2 cut(s) 429, 609
Tru9I TTAA 2 cut(s) 429, 609
TspDTI ATGAA 1 cut(s) 330
XmnI GAANNNNTTC 1 cut(s) 483
XspI CTAG 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.