Rh2AG490400

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000917
Physical Location & Seq
Reverse (-)
71273270 .. 71274325
1056 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG490400.1

Sequence Viewer

Length: 978 bp
ATGTTGATCTTCGTGGCGGAGGAAGCTTTGCTCTTCAACTTTGATCGAATATGGCCAAGGATGCCATCGTTTTCTAATGAGTCGGACGAGCAGTATCTTGATCTGAAACATGAATGGCTTACTAAGCTGAACAAGGTTGCAGTCATTCAACTGGGACGGTGGCAAGGATTGCCTATGCATCACATTGAAGTGGAGGATGAAGCATTCTTAAGGGGTTTGGGAGGTCATCAGAATAAGCACTTGAAATATCTGAGCCTTCGAGGAATATCACAAATTACCGAACTACCTTATTGTATCTTTAATATCACCAGCCTTGAAATTCTGGATCTGAGAGCACGTCACAACTTAGAGACATTGCCTGAAGATATCTCACCAGTCAGGAAGCTCACCCATTTTGACATATCCGAGTGTTACTTGCTAGACCGCATGCCGAAAGGGATTGACAAACTTTCATACCTCCAAGTACTCAATGGTTATGTGAATGGAGATTTAAAAGGAACTCCATGCAGAATTGGCGATTTTGCCCAGTTGAATAAGCTAAGGCGCCTCAGTATACATATTGGGAATGAGGCTGTAGTTCGACAAGGGGAGTTCAGCGAGCTGAAGGACATCTCATCTCTTCGCCACCTAAAAATATCATGGGGAGTCGTTGCTCCAAATTCAAAAGCAAAAGTAGCCTTCCAATCCTTGGAGTTCTCATTTCCTCCGTATCTAGAAAAATTGTCTCTTCAAGGCATCCCTCTAGCACAAGTACCAGAATGGTTGAACCCTAGCCAGTTCAAAAACTTAAAGAAGCTCTACATAAGCGGCGGAGAGTTTGATACGTTGGATCACGGGGAGACTGACTGCAAGTGGACAGTGGAAATCTTGCGTCTCAAGTACTTGAGTAATATCGAAAAGAGTTTGCCCGAGTTGAAGGAAGAGTTTCCTTGGCTGCGCTACTCGGAGGTTGGAGAGAAGCGAAAAAGTTATACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

325

Amino Acids

37.66

Weight (kDa)

6.57

Isoelectric Point (pI)

48.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 79 - 269 1.3e-24 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 174 - 270 1.1e-06 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 543
AccB7I CCANNNNNTGG 1 cut(s) 688
AccI GTMKAC 1 cut(s) 553
AciI CCGC 4 cut(s) 17, 424, 807, 810
AclWI GGATC 2 cut(s) 333, 837
AcoI YGGCCR 1 cut(s) 53
AcsI RAATTY 2 cut(s) 318, 658
AcuI CTGAAG 2 cut(s) 381, 623
AcyI GRCGYC 1 cut(s) 544
AfaI GTAC 3 cut(s) 465, 753, 881
AfiI CCNNNNNNNGG 1 cut(s) 688
AflII CTTAAG 1 cut(s) 208
AjiI CACGTC 1 cut(s) 338
AluBI AGCT 6 cut(s) 26, 127, 385, 538, 601, 796
AluI AGCT 6 cut(s) 26, 127, 385, 538, 601, 796
Alw21I GWGCWC 1 cut(s) 337
Alw26I GTCTC 4 cut(s) 344, 729, 833, 878
AlwI GGATC 2 cut(s) 333, 837
Ama87I CYCGRG 1 cut(s) 908
AoxI GGCC 1 cut(s) 53
ApeKI GCWGC 1 cut(s) 934
ApoI RAATTY 2 cut(s) 318, 658
Asp700I GAANNNNTTC 1 cut(s) 924
AspLEI GCGC 2 cut(s) 546, 939
AsuHPI GGTGA 3 cut(s) 298, 363, 379
AvaI CYCGRG 1 cut(s) 908
BalI TGGCCA 1 cut(s) 55
BanI GGYRCC 1 cut(s) 543
Bbv12I GWGCWC 1 cut(s) 337
BbvI GCAGC 1 cut(s) 921
BccI CCATC 1 cut(s) 73
BcoDI GTCTC 4 cut(s) 344, 729, 833, 878
BfaI CTAG 4 cut(s) 419, 713, 743, 771
BfmI CTRYAG 1 cut(s) 573
BfoI RGCGCY 1 cut(s) 547
BfrI CTTAAG 1 cut(s) 208
BisI GCNGC 2 cut(s) 808, 935
BlsI GCNGC 2 cut(s) 809, 936
BmcAI AGTACT 2 cut(s) 465, 881
BmeT110I CYCGRG 1 cut(s) 908
BmgBI CACGTC 1 cut(s) 338
BmiI GGNNCC 1 cut(s) 545
BmrI ACTGGG 2 cut(s) 161, 520
BmsI GCATC 3 cut(s) 51, 187, 744
BmuI ACTGGG 2 cut(s) 161, 520
Bpu10I CCTNAGC 1 cut(s) 539
BpuEI CTTGAG 2 cut(s) 860, 904
BsaHI GRCGYC 1 cut(s) 544
BsaJI CCNNGG 3 cut(s) 56, 687, 929
Bsc4I CCNNNNNNNGG 1 cut(s) 688
Bse1I ACTGG 4 cut(s) 156, 374, 526, 775
Bse3DI GCAATG 1 cut(s) 353
BseDI CCNNGG 3 cut(s) 56, 687, 929
BseGI GGATG 3 cut(s) 66, 202, 735
BseLI CCNNNNNNNGG 1 cut(s) 688
BseMI GCAATG 1 cut(s) 353
BseMII CTCAG 3 cut(s) 242, 320, 562
BseNI ACTGG 4 cut(s) 156, 374, 526, 775
BseXI GCAGC 1 cut(s) 921
BshFI GGCC 1 cut(s) 55
BshNI GGYRCC 1 cut(s) 543
BsiHKAI GWGCWC 1 cut(s) 337
BsiHKCI CYCGRG 1 cut(s) 908
BslFI GGGAC 1 cut(s) 168
BslI CCNNNNNNNGG 1 cut(s) 688
BsmAI GTCTC 4 cut(s) 344, 729, 833, 878
BsmBI CGTCTC 1 cut(s) 878
BsmFI GGGAC 1 cut(s) 168
BsmI GAATGC 1 cut(s) 203
BsnI GGCC 1 cut(s) 55
BsoBI CYCGRG 1 cut(s) 908
Bsp1286I GDGCHC 1 cut(s) 337
Bsp143I GATC 5 cut(s) 6, 43, 100, 325, 829
BspACI CCGC 4 cut(s) 17, 424, 807, 810
BspANI GGCC 1 cut(s) 55
BspCNI CTCAG 3 cut(s) 243, 321, 561
BspLI GGNNCC 1 cut(s) 545
BspPI GGATC 2 cut(s) 333, 837
BspQI GCTCTTC 1 cut(s) 38
BspT107I GGYRCC 1 cut(s) 543
BspTI CTTAAG 1 cut(s) 208
BsrDI GCAATG 1 cut(s) 353
BsrI ACTGG 4 cut(s) 156, 374, 526, 775
BssECI CCNNGG 3 cut(s) 56, 687, 929
BssMI GATC 5 cut(s) 6, 43, 100, 325, 829
BssNAI GTATAC 1 cut(s) 554
BssNI GRCGYC 1 cut(s) 544
BssT1I CCWWGG 3 cut(s) 56, 687, 929
Bst1107I GTATAC 1 cut(s) 554
Bst4CI ACNGT 2 cut(s) 159, 859
Bst6I CTCTTC 4 cut(s) 38, 624, 732, 915
BstACI GRCGYC 1 cut(s) 544
BstAFI CTTAAG 1 cut(s) 208
BstAPI GCANNNNNTGC 1 cut(s) 169
BstC8I GCNNGC 2 cut(s) 428, 599
BstDEI CTNAG 6 cut(s) 123, 251, 329, 346, 539, 548
BstF5I GGATG 3 cut(s) 66, 202, 735
BstH2I RGCGCY 1 cut(s) 547
BstHHI GCGC 2 cut(s) 546, 939
BstKTI GATC 5 cut(s) 9, 46, 103, 328, 832
BstMAI GTCTC 4 cut(s) 344, 729, 833, 878
BstMBI GATC 5 cut(s) 6, 43, 100, 325, 829
BstMWI GCNNNNNNNGC 6 cut(s) 23, 61, 124, 169, 513, 674
BstNSI RCATGY 1 cut(s) 430
BstSFI CTRYAG 1 cut(s) 573
BstV1I GCAGC 1 cut(s) 921
BstX2I RGATCY 1 cut(s) 325
BstYI RGATCY 1 cut(s) 325
BstZ17I GTATAC 1 cut(s) 554
BsuRI GGCC 1 cut(s) 55
BtrI CACGTC 1 cut(s) 338
BtsCI GGATG 3 cut(s) 66, 202, 735
BtsIMutI CAGTG 1 cut(s) 864
Cac8I GCNNGC 2 cut(s) 428, 599
CfoI GCGC 2 cut(s) 546, 939
CseI GACGC 1 cut(s) 860
Csp6I GTAC 3 cut(s) 464, 752, 880
CviAII CATG 4 cut(s) 110, 427, 504, 639
CviQI GTAC 3 cut(s) 464, 752, 880
DdeI CTNAG 6 cut(s) 123, 251, 329, 346, 539, 548
DinI GGCGCC 1 cut(s) 545
DpnI GATC 5 cut(s) 8, 45, 102, 327, 831
DpnII GATC 5 cut(s) 6, 43, 100, 325, 829
DraI TTTAAA 1 cut(s) 492
EaeI YGGCCR 1 cut(s) 53
Eam1104I CTCTTC 4 cut(s) 38, 624, 732, 915
EarI CTCTTC 4 cut(s) 38, 624, 732, 915
EciI GGCGGA 2 cut(s) 32, 825
Eco130I CCWWGG 3 cut(s) 56, 687, 929
Eco32I GATATC 1 cut(s) 367
Eco57I CTGAAG 2 cut(s) 381, 623
Eco88I CYCGRG 1 cut(s) 908
EcoRV GATATC 1 cut(s) 367
EcoT14I CCWWGG 3 cut(s) 56, 687, 929
EcoT22I ATGCAT 1 cut(s) 180
EgeI GGCGCC 1 cut(s) 545
EheI GGCGCC 1 cut(s) 545
ErhI CCWWGG 3 cut(s) 56, 687, 929
Esp3I CGTCTC 1 cut(s) 878
FaeI CATG 4 cut(s) 113, 430, 507, 642
FaqI GGGAC 1 cut(s) 168
FatI CATG 4 cut(s) 109, 426, 503, 638
FblI GTMKAC 1 cut(s) 553
Fnu4HI GCNGC 2 cut(s) 808, 935
FokI GGATG 3 cut(s) 73, 209, 722
Fsp4HI GCNGC 2 cut(s) 808, 935
FspBI CTAG 4 cut(s) 419, 713, 743, 771
GlaI GCGC 2 cut(s) 545, 938
GluI GCNGC 2 cut(s) 808, 935
HaeII RGCGCY 1 cut(s) 547
HaeIII GGCC 1 cut(s) 55
HgaI GACGC 1 cut(s) 860
HhaI GCGC 2 cut(s) 546, 939
Hin1I GRCGYC 1 cut(s) 544
Hin1II CATG 4 cut(s) 113, 430, 507, 642
Hin6I GCGC 2 cut(s) 544, 937
HinP1I GCGC 2 cut(s) 544, 937
HindIII AAGCTT 1 cut(s) 24
HinfI GANTC 2 cut(s) 80, 645
HphI GGTGA 3 cut(s) 298, 363, 379
Hpy166II GTNNAC 2 cut(s) 554, 855
Hpy188I TCNGA 7 cut(s) 85, 105, 231, 252, 330, 406, 946
Hpy188III TCNNGA 4 cut(s) 98, 323, 379, 713
Hpy8I GTNNAC 2 cut(s) 554, 855
HpyAV CCTTC 4 cut(s) 266, 598, 688, 910
HpyCH4III ACNGT 2 cut(s) 159, 859
HpyCH4IV ACGT 2 cut(s) 337, 824
HpyCH4V TGCA 4 cut(s) 140, 178, 507, 849
HpyF10VI GCNNNNNNNGC 6 cut(s) 23, 61, 124, 169, 513, 674
HpyF3I CTNAG 6 cut(s) 123, 251, 329, 346, 539, 548
HpySE526I ACGT 2 cut(s) 337, 824
Hsp92I GRCGYC 1 cut(s) 544
Hsp92II CATG 4 cut(s) 113, 430, 507, 642
HspAI GCGC 2 cut(s) 544, 937
KasI GGCGCC 1 cut(s) 543
Kzo9I GATC 5 cut(s) 6, 43, 100, 325, 829
LguI GCTCTTC 1 cut(s) 38
LmnI GCTCC 1 cut(s) 658
LpnPI CCDG 9 cut(s) 137, 308, 322, 364, 372, 387, 539, 768, 788
Lsp1109I GCAGC 1 cut(s) 921
LweI GCATC 3 cut(s) 51, 187, 744
MaeI CTAG 4 cut(s) 419, 713, 743, 771
MaeII ACGT 2 cut(s) 337, 824
MaeIII GTNAC 2 cut(s) 338, 410
MalI GATC 5 cut(s) 8, 45, 102, 327, 831
MboI GATC 5 cut(s) 6, 43, 100, 325, 829
MboII GAAGA 5 cut(s) 25, 374, 611, 719, 932
MflI RGATCY 1 cut(s) 325
MhlI GDGCHC 1 cut(s) 337
MlsI TGGCCA 1 cut(s) 55
MluCI AATT 5 cut(s) 273, 318, 510, 658, 719
MluNI TGGCCA 1 cut(s) 55
Mly113I GGCGCC 1 cut(s) 544
MlyI GAGTC 2 cut(s) 89, 654
MmeI TCCRAC 3 cut(s) 63, 807, 931
Mox20I TGGCCA 1 cut(s) 55
Mph1103I ATGCAT 1 cut(s) 180
MroXI GAANNNNTTC 1 cut(s) 924
MscI TGGCCA 1 cut(s) 55
MseI TTAA 4 cut(s) 209, 300, 491, 788
MslI CAYNNNNRTG 1 cut(s) 188
Msp20I TGGCCA 1 cut(s) 55
MspCI CTTAAG 1 cut(s) 208
Mva1269I GAATGC 1 cut(s) 203
MwoI GCNNNNNNNGC 6 cut(s) 23, 61, 124, 169, 513, 674
NarI GGCGCC 1 cut(s) 544
NdeII GATC 5 cut(s) 6, 43, 100, 325, 829
NlaIII CATG 4 cut(s) 113, 430, 507, 642
NlaIV GGNNCC 1 cut(s) 545
NmuCI GTSAC 1 cut(s) 338
NsiI ATGCAT 1 cut(s) 180
NspI RCATGY 1 cut(s) 430
PaeI GCATGC 1 cut(s) 430
PciSI GCTCTTC 1 cut(s) 38
PctI GAATGC 1 cut(s) 203
PdmI GAANNNNTTC 1 cut(s) 924
PflMI CCANNNNNTGG 1 cut(s) 688
PkrI GCNGC 2 cut(s) 809, 936
PleI GAGTC 2 cut(s) 88, 653
PluTI GGCGCC 1 cut(s) 547
PpsI GAGTC 2 cut(s) 88, 653
PspN4I GGNNCC 1 cut(s) 545
PsuI RGATCY 1 cut(s) 325
RsaI GTAC 3 cut(s) 465, 753, 881
RsaNI GTAC 3 cut(s) 464, 752, 880
RseI CAYNNNNRTG 1 cut(s) 188
SapI GCTCTTC 1 cut(s) 38
SaqAI TTAA 4 cut(s) 209, 300, 491, 788
SatI GCNGC 2 cut(s) 808, 935
Sau3AI GATC 5 cut(s) 6, 43, 100, 325, 829
ScaI AGTACT 2 cut(s) 465, 881
SchI GAGTC 2 cut(s) 89, 654
SduI GDGCHC 1 cut(s) 337
SfaNI GCATC 3 cut(s) 51, 187, 744
SfcI CTRYAG 1 cut(s) 573
SfoI GGCGCC 1 cut(s) 545
SmiMI CAYNNNNRTG 1 cut(s) 188
SmlI CTYRAG 3 cut(s) 208, 875, 883
SmoI CTYRAG 3 cut(s) 208, 875, 883
SphI GCATGC 1 cut(s) 430
Sse9I AATT 5 cut(s) 273, 318, 510, 658, 719
SsiI CCGC 4 cut(s) 17, 424, 807, 810
SspDI GGCGCC 1 cut(s) 543
SspMI CTAG 4 cut(s) 419, 713, 743, 771
StyI CCWWGG 3 cut(s) 56, 687, 929
TaaI ACNGT 2 cut(s) 159, 859
TaiI ACGT 2 cut(s) 340, 827
TaqI TCGA 4 cut(s) 46, 259, 580, 894
TasI AATT 5 cut(s) 273, 318, 510, 658, 719
TatI WGTACW 2 cut(s) 463, 879
TauI GCSGC 1 cut(s) 810
Tru1I TTAA 4 cut(s) 209, 300, 491, 788
Tru9I TTAA 4 cut(s) 209, 300, 491, 788
TscAI CASTG 1 cut(s) 864
TseFI GTSAC 1 cut(s) 338
TseI GCWGC 1 cut(s) 934
Tsp45I GTSAC 1 cut(s) 338
TspDTI ATGAA 3 cut(s) 126, 213, 441
TspGWI ACGGA 1 cut(s) 696
TspRI CASTG 1 cut(s) 864
Van91I CCANNNNNTGG 1 cut(s) 688
Vha464I CTTAAG 1 cut(s) 208
XapI RAATTY 2 cut(s) 318, 658
XbaI TCTAGA 1 cut(s) 712
XceI RCATGY 1 cut(s) 430
XcmI CCANNNNNNNNNTGG 1 cut(s) 467
XmiI GTMKAC 1 cut(s) 553
XmnI GAANNNNTTC 1 cut(s) 924
XspI CTAG 4 cut(s) 419, 713, 743, 771
ZrmI AGTACT 2 cut(s) 465, 881
Zsp2I ATGCAT 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.