Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000917

Physical Location & Seq

Genomic Coordinates Forward (+)

24207686 .. 24209289

Gene Structure 1604 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G018600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGCAAATTCCGAGGTGGAGTTGGCTGATCCACCTGAGGAAAGGTCACAAGATCAGCGGAAACTGAGCGCGGAGGCAATTTTCGATAAAAGTGAGGCCATGGCCAACATAAGGAGGAGTTATGGAGATCTTCGGGGCACGGAATTGAAGGAAAAAACTCCCACCAAACTTGGTGAACTTGTGACATTGAAGAAGCTAAGGAGGCTCAGCATACACATTGGGAATGGGGCTGCAATTCAAGCAGTGGAGTTCAAAAAGTTGAAAGATATGTCATCTCTTCGCTTCCTCAAGGTATCATGGGGAGTGGTTTCTAAAAATTTGACAGAGGACGAAGAAGTGAAGAGTTTTCCTCATCGGAAGTACTGGACAGTGAAGAACCTCAGTGAAGCTGAGGCTAGGAGTTATGTCAATTCTAATTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

140

Amino Acids

15.97

Weight (kDa)

9.27

Isoelectric Point (pI)

49.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000917)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g29201 FvH4_6g29201 FvH4_6g29201
malus_domestica	MD09G1222600.v1.1
prunus_persica	Prupe.3G175600_v2.0.a1 Prupe.3G175600_v2.0.a1 Prupe.3G176100_v2.0.a1 Prupe.4G057900_v2.0.a1
pyrus_communis	pycom808g00780
rosa_chinensis	RchiOBHm_Chr2g0111461 RchiOBHm_Chr2g0112821 RchiOBHm_Chr2g0151861 RchiOBHm_Chr2g0152221
rosa_laevigata	RLG00000018013 RLG00000018014 RLG00000020584 RLG00000020617
rosa_multiflora	Rmu_co8270923.1_g000001 Rmu_sc0001687.1_g000009 Rmu_sc0002351.1_g000014 Rmu_sc0003043.1_g000010 Rmu_sc0004286.1_g000015 Rmu_sc0005294.1_g000017 Rmu_sc0005791.1_g000005 Rmu_sc0006226.1_g000001 Rmu_sc0008578.1_g000006 Rmu_sc0017895.1_g000007 Rmu_sc0023925.1_g000005 Rmu_ssc0000400.1_g000039
rosa_roxburghii	Rroxscaffold_2G00096130 Rroxscaffold_2G00131120 Rroxscaffold_4G00302580 Rroxscaffold_7G00189350
rosa_rugosa	Rorug02G0174500 Rorug02G0182800 Rorug02G0429200 Rorug02G0429600.1 Rorug02G0431300 Rorug02G0431400 Rorug02G0431500
rosa_samantha	Rh2AG227200 Rh2AG237600 Rh2AG490200 Rh2AG490400 Rh2AG492800 Rh2BG239000 Rh2BG250300 Rh2BG502600 Rh2BG505400 Rh2CG230800 Rh2CG241400 Rh2CG476500 Rh2CG476800 Rh2CG479200 Rh2DG234800 Rh2DG245100 Rh2DG513800 Rh2DG516600
rosa_wichuraiana	Rw0G018020 Rw0G020240 Rw2G018600 Rw2G040180 Rw2G040300 Rw2G040500 Rw2G040520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	71
AciI	CCGC	2 cut(s)	58, 71
AclWI	GGATC	1 cut(s)	23
AcoI	YGGCCR	1 cut(s)	102
AcsI	RAATTY	2 cut(s)	7, 316
AfaI	GTAC	1 cut(s)	362
AfiI	CCNNNNNNNGG	1 cut(s)	111
AgsI	TTSAA	5 cut(s)	148, 190, 239, 253, 262
AluBI	AGCT	2 cut(s)	196, 389
AluI	AGCT	2 cut(s)	196, 389
AlwI	GGATC	1 cut(s)	23
AoxI	GGCC	2 cut(s)	96, 102
ApeKI	GCWGC	1 cut(s)	230
ApoI	RAATTY	2 cut(s)	7, 316
AspLEI	GCGC	1 cut(s)	71
AsuHPI	GGTGA	1 cut(s)	185
AxyI	CCTNAGG	1 cut(s)	36
BaeGI	GKGCMC	1 cut(s)	140
BalI	TGGCCA	1 cut(s)	104
BbvCI	CCTCAGC	1 cut(s)	390
BbvI	GCAGC	1 cut(s)	217
BfaI	CTAG	1 cut(s)	396
BglII	AGATCT	1 cut(s)	127
BisI	GCNGC	1 cut(s)	231
BlpI	GCTNAGC	1 cut(s)	206
BlsI	GCNGC	1 cut(s)	232
BmcAI	AGTACT	1 cut(s)	362
BplI	GAGNNNNNCTC	2 cut(s)	334, 366
Bpu10I	CCTNAGC	2 cut(s)	197, 390
Bpu1102I	GCTNAGC	1 cut(s)	206
BpuEI	CTTGAG	1 cut(s)	272
BsaJI	CCNNGG	2 cut(s)	12, 99
Bsc4I	CCNNNNNNNGG	1 cut(s)	111
Bse1I	ACTGG	1 cut(s)	368
Bse21I	CCTNAGG	1 cut(s)	36
BseDI	CCNNGG	2 cut(s)	12, 99
BseLI	CCNNNNNNNGG	1 cut(s)	111
BseMII	CTCAG	5 cut(s)	27, 56, 220, 381, 394
BseNI	ACTGG	1 cut(s)	368
BseRI	GAGGAG	1 cut(s)	130
BseSI	GKGCMC	1 cut(s)	140
BseXI	GCAGC	1 cut(s)	217
Bsh1236I	CGCG	1 cut(s)	71
BshFI	GGCC	2 cut(s)	98, 104
BslI	CCNNNNNNNGG	1 cut(s)	111
BsnI	GGCC	2 cut(s)	98, 104
Bsp1286I	GDGCHC	1 cut(s)	140
Bsp143I	GATC	3 cut(s)	28, 52, 127
Bsp1720I	GCTNAGC	1 cut(s)	206
Bsp19I	CCATGG	1 cut(s)	99
BspACI	CCGC	2 cut(s)	58, 71
BspANI	GGCC	2 cut(s)	98, 104
BspCNI	CTCAG	5 cut(s)	28, 57, 219, 382, 393
BspFNI	CGCG	1 cut(s)	71
BspPI	GGATC	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	368
BssECI	CCNNGG	2 cut(s)	12, 99
BssMI	GATC	3 cut(s)	28, 52, 127
BssT1I	CCWWGG	1 cut(s)	99
Bst4CI	ACNGT	1 cut(s)	370
Bst6I	CTCTTC	2 cut(s)	282, 335
BstDEI	CTNAG	6 cut(s)	36, 65, 197, 206, 380, 390
BstDSI	CCRYGG	1 cut(s)	99
BstFNI	CGCG	1 cut(s)	71
BstHHI	GCGC	1 cut(s)	71
BstKTI	GATC	3 cut(s)	31, 55, 130
BstMBI	GATC	3 cut(s)	28, 52, 127
BstMWI	GCNNNNNNNGC	2 cut(s)	202, 239
BstSLI	GKGCMC	1 cut(s)	140
BstUI	CGCG	1 cut(s)	71
BstV1I	GCAGC	1 cut(s)	217
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
Bsu36I	CCTNAGG	1 cut(s)	36
BsuRI	GGCC	2 cut(s)	98, 104
BtgI	CCRYGG	1 cut(s)	99
BtsI	GCAGTG	1 cut(s)	249
BtsIMutI	CAGTG	3 cut(s)	249, 375, 388
CfoI	GCGC	1 cut(s)	71
Csp6I	GTAC	1 cut(s)	361
CspCI	CAANNNNNGTGG	2 cut(s)	151, 186
CviAII	CATG	2 cut(s)	100, 297
CviJI	RGCY	8 cut(s)	26, 98, 104, 196, 205, 230, 389, 395
CviKI_1	RGCY	8 cut(s)	26, 98, 104, 196, 205, 230, 389, 395
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	6 cut(s)	36, 65, 197, 206, 380, 390
DpnI	GATC	3 cut(s)	30, 54, 129
DpnII	GATC	3 cut(s)	28, 52, 127
EaeI	YGGCCR	1 cut(s)	102
Eam1104I	CTCTTC	2 cut(s)	282, 335
EarI	CTCTTC	2 cut(s)	282, 335
Eco130I	CCWWGG	1 cut(s)	99
Eco81I	CCTNAGG	1 cut(s)	36
EcoT14I	CCWWGG	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	99
FaeI	CATG	2 cut(s)	103, 300
FaiI	YATR	7 cut(s)	101, 110, 123, 212, 269, 298, 405
FatI	CATG	2 cut(s)	99, 296
Fnu4HI	GCNGC	1 cut(s)	231
Fsp4HI	GCNGC	1 cut(s)	231
FspBI	CTAG	1 cut(s)	396
GlaI	GCGC	1 cut(s)	70
GluI	GCNGC	1 cut(s)	231
HaeIII	GGCC	2 cut(s)	98, 104
HhaI	GCGC	1 cut(s)	71
Hin1II	CATG	2 cut(s)	103, 300
Hin6I	GCGC	1 cut(s)	69
HinP1I	GCGC	1 cut(s)	69
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	1 cut(s)	176
Hpy188I	TCNGA	2 cut(s)	13, 357
Hpy8I	GTNNAC	1 cut(s)	176
HpyAV	CCTTC	1 cut(s)	142
HpyCH4III	ACNGT	1 cut(s)	370
HpyCH4V	TGCA	1 cut(s)	233
HpyF10VI	GCNNNNNNNGC	2 cut(s)	202, 239
HpyF3I	CTNAG	6 cut(s)	36, 65, 197, 206, 380, 390
Hsp92II	CATG	2 cut(s)	103, 300
HspAI	GCGC	1 cut(s)	69
Kzo9I	GATC	3 cut(s)	28, 52, 127
LpnPI	CCDG	2 cut(s)	48, 349
Lsp1109I	GCAGC	1 cut(s)	217
MaeI	CTAG	1 cut(s)	396
MaeIII	GTNAC	2 cut(s)	45, 181
MalI	GATC	3 cut(s)	30, 54, 129
MboI	GATC	3 cut(s)	28, 52, 127
MboII	GAAGA	6 cut(s)	122, 202, 269, 344, 352, 385
MflI	RGATCY	1 cut(s)	127
MhlI	GDGCHC	1 cut(s)	140
MlsI	TGGCCA	1 cut(s)	104
MluCI	AATT	7 cut(s)	7, 78, 143, 234, 316, 409, 415
MluNI	TGGCCA	1 cut(s)	104
Mox20I	TGGCCA	1 cut(s)	104
MscI	TGGCCA	1 cut(s)	104
Msp20I	TGGCCA	1 cut(s)	104
MspA1I	CMGCKG	1 cut(s)	58
MvnI	CGCG	1 cut(s)	71
MwoI	GCNNNNNNNGC	2 cut(s)	202, 239
NcoI	CCATGG	1 cut(s)	99
NdeII	GATC	3 cut(s)	28, 52, 127
NlaIII	CATG	2 cut(s)	103, 300
NmuCI	GTSAC	2 cut(s)	45, 181
PkrI	GCNGC	1 cut(s)	232
PsuI	RGATCY	1 cut(s)	127
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	3 cut(s)	28, 52, 127
ScaI	AGTACT	1 cut(s)	362
SduI	GDGCHC	1 cut(s)	140
SetI	ASST	7 cut(s)	18, 37, 47, 198, 294, 381, 391
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	7 cut(s)	7, 78, 143, 234, 316, 409, 415
SsiI	CCGC	2 cut(s)	58, 71
SspMI	CTAG	1 cut(s)	396
StyI	CCWWGG	1 cut(s)	99
TaaI	ACNGT	1 cut(s)	370
TaqI	TCGA	1 cut(s)	84
TasI	AATT	7 cut(s)	7, 78, 143, 234, 316, 409, 415
TatI	WGTACW	1 cut(s)	360
TscAI	CASTG	3 cut(s)	249, 375, 388
TseFI	GTSAC	2 cut(s)	45, 181
TseI	GCWGC	1 cut(s)	230
Tsp45I	GTSAC	2 cut(s)	45, 181
TspGWI	ACGGA	1 cut(s)	155
TspRI	CASTG	3 cut(s)	249, 375, 388
XapI	RAATTY	2 cut(s)	7, 316
XspI	CTAG	1 cut(s)	396
ZrmI	AGTACT	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.