RchiOBHm_Chr2g0151861

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000917
Physical Location & Seq
Reverse (-)
69384321 .. 69385736
1416 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52103

Sequence Viewer

Length: 1416 bp
ATGAGTAGTATAAAGCTCAGCTATGAGCGTTTAGAGAGCATCGAACTGAAGATGTGCTGTCTATCACTGTCGATCTTTCCAGAGAGTTCTGTCATAAAGAAGAGGCCTCTAATTTACTTCTGGATTGGCCAGGCTTTCGTTACGAGCACACAAGACGAGACTGCAGAGGAGGTAGGAGAAGATGTCTTTAGAAAACTCATGATATGCAACTTGATTCAACCACATTTAAATGCGTCCAGTACTTTTGTGAATAATTGTACAATACATCCTTGGATTCATCGCATGTTGATGTTCTTGGCTCATGAAGCTGAGCTTTTCGACTTTAGTTCAAGATTGCCATTGAAGGAAACTATGAAAAATAGTATGGGTGTATGCTTAACTTTTGATCAGCCAGTCCCTGAGTTACCTCCAGCTGACTTCGACAATGTAATACCGACAGTTTTCAATGTAAGTGCCCAATATCTCATATTGAAACCAGAATGGCTAATCGGGTTGAAGACACTCACGGTTCTCCAGCTGGGACGGTGGCAGAACTCGACTTCTCATCACATTGAAGTGGATGATGAAGCGTTTTTAGATGGATTAGGAGCCCTGAAGCACTTGAAGTATTTTAGCCTCCGCGGAATGTCAACAATTGCCAAGCTCCCTTCAGCTCTCCTTAAGCTCATCAACCTTGAAATTCTAGATCTGAGAGCATGCCACAACTTGGAGAAATTGCCTTCGGATATCTCATCGTTGAGGAAGCTCACACATTTGGATGTGTCAGAGTGTTACTTGCTTGACATTATGCCAAAAGGGATTGACAAACTCTCTTGCCTTGAAGTTCTGGAAGGTTATGTGATAGGAGGTCCGAAAAGAACTCCCTGCAGAGTTGGTGATCTTGCCAAGTTGAAGAGACTAAAGCGGCTCAGCATACACATGGGGAATGAGGCTGAAGTTAAGGAGGGGGAATTGGAGGAGTTGGAGAAAATTGAATCTCTTTGCCGCCTAAAATTATCATGGGGAGTGGTTGCTCCAAAGTTGAGAAAGAAGGTCTCTCAACAGTCCTTAAAACTCTCATTTCCACCAGATTTAGAAAAATTAGAACTTCAAGGCATCCCCCTAGGACAAGTACCTGAATGGTTGAACCCTAGCAAATTGAAGAAGTTAAAGAAGCTCTACATTAGGGGTGGGGGGCTTGATAGTTTGAATCATAAGGAGACTGAAGATTGGAAAGTTGAAGTCTTGCGTCTCAAGTACTTAAAGAAGCTGGAGATAGGATTTCAACAGTTGCAGCAAGAGTTTCCTCATCTGCGGTACTTGGAGAAAATCGACTGCCATCTGAGTCAAGGGGATACATATGATAAAGACATTGTTTGGAGCAAAGTGGAAGGCGATATATCAGATAGGTATATCAATGCTACGAATAAAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

471

Amino Acids

53.84

Weight (kDa)

7.18

Isoelectric Point (pI)

44.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_DRP PF23559 25 - 95 1.3e-14 Disease resistance protein Winged helix domain
LRR_14 PF23598 166 - 389 6.6e-30 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 166 - 257 3.6e-07 R13L1/DRL21 LRRs
LRR_R13L1-DRL21 PF25019 293 - 419 3.7e-06 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 706
AccII CGCG 1 cut(s) 621
AciI CCGC 5 cut(s) 619, 621, 904, 985, 1294
AcoI YGGCCR 1 cut(s) 127
AcsI RAATTY 1 cut(s) 678
AcuI CTGAAG 5 cut(s) 68, 614, 633, 954, 1224
AfaI GTAC 5 cut(s) 241, 259, 1113, 1238, 1298
AfiI CCNNNNNNNGG 1 cut(s) 706
AflII CTTAAG 1 cut(s) 659
AjnI CCWGG 1 cut(s) 129
Alw21I GWGCWC 1 cut(s) 149
Alw26I GTCTC 5 cut(s) 152, 889, 1039, 1193, 1235
AlwNI CAGNNNCTG 1 cut(s) 398
AoxI GGCC 2 cut(s) 104, 127
ApeKI GCWGC 1 cut(s) 1273
ApoI RAATTY 1 cut(s) 678
AspA2I CCTAGG 1 cut(s) 1102
AspS9I GGNCC 1 cut(s) 848
AsuHPI GGTGA 1 cut(s) 887
AvaII GGWCC 1 cut(s) 848
AvrII CCTAGG 1 cut(s) 1102
BaeGI GKGCMC 1 cut(s) 457
BalI TGGCCA 1 cut(s) 129
BanII GRGCYC 1 cut(s) 592
BbsI GAAGAC 1 cut(s) 503
Bbv12I GWGCWC 1 cut(s) 149
BbvI GCAGC 1 cut(s) 1285
BccI CCATC 2 cut(s) 572, 1326
BciT130I CCWGG 1 cut(s) 131
BciVI GTATCC 1 cut(s) 1327
BclI TGATCA 1 cut(s) 385
BcoDI GTCTC 5 cut(s) 152, 889, 1039, 1193, 1235
BfaI CTAG 4 cut(s) 683, 1103, 1131, 1414
BfmI CTRYAG 2 cut(s) 162, 865
BfrI CTTAAG 1 cut(s) 659
BfuI GTATCC 1 cut(s) 1327
BglII AGATCT 1 cut(s) 685
BisI GCNGC 3 cut(s) 905, 985, 1274
BlnI CCTAGG 1 cut(s) 1102
BlpI GCTNAGC 3 cut(s) 17, 309, 908
BlsI GCNGC 3 cut(s) 906, 986, 1275
BmcAI AGTACT 2 cut(s) 241, 1238
Bme1390I CCNGG 1 cut(s) 131
Bme18I GGWCC 1 cut(s) 848
BmgT120I GGNCC 1 cut(s) 848
BmiI GGNNCC 1 cut(s) 589
BmrFI CCNGG 1 cut(s) 131
BmsI GCATC 2 cut(s) 48, 1104
BpiI GAAGAC 1 cut(s) 503
BpmI CTGGAG 3 cut(s) 393, 497, 1271
Bpu1102I GCTNAGC 3 cut(s) 17, 309, 908
BpuEI CTTGAG 1 cut(s) 1217
BsaI GGTCTC 1 cut(s) 1039
BsaJI CCNNGG 3 cut(s) 269, 619, 1102
BsaXI ACNNNNNCTCC 2 cut(s) 168, 198
Bsc4I CCNNNNNNNGG 1 cut(s) 706
Bse1I ACTGG 2 cut(s) 237, 392
BseBI CCWGG 1 cut(s) 131
BseDI CCNNGG 3 cut(s) 269, 619, 1102
BseGI GGATG 4 cut(s) 265, 565, 763, 1095
BseLI CCNNNNNNNGG 1 cut(s) 706
BseMII CTCAG 6 cut(s) 31, 300, 390, 680, 922, 1313
BseNI ACTGG 2 cut(s) 237, 392
BseRI GAGGAG 2 cut(s) 182, 971
BseSI GKGCMC 1 cut(s) 457
BseXI GCAGC 1 cut(s) 1285
BseYI CCCAGC 1 cut(s) 517
Bsh1236I CGCG 1 cut(s) 621
BshFI GGCC 2 cut(s) 106, 129
BsiHKAI GWGCWC 1 cut(s) 149
BslFI GGGAC 2 cut(s) 380, 534
BslI CCNNNNNNNGG 1 cut(s) 706
BsmAI GTCTC 5 cut(s) 152, 889, 1039, 1193, 1235
BsmBI CGTCTC 1 cut(s) 1235
BsmFI GGGAC 2 cut(s) 380, 534
BsnI GGCC 2 cut(s) 106, 129
Bso31I GGTCTC 1 cut(s) 1039
Bsp1286I GDGCHC 3 cut(s) 149, 457, 592
Bsp1407I TGTACA 1 cut(s) 257
Bsp143I GATC 4 cut(s) 72, 385, 685, 877
Bsp1720I GCTNAGC 3 cut(s) 17, 309, 908
BspACI CCGC 5 cut(s) 619, 621, 904, 985, 1294
BspANI GGCC 2 cut(s) 106, 129
BspCNI CTCAG 6 cut(s) 30, 301, 391, 681, 921, 1314
BspFNI CGCG 1 cut(s) 621
BspHI TCATGA 2 cut(s) 198, 301
BspLI GGNNCC 1 cut(s) 589
BspMAI CTGCAG 2 cut(s) 166, 869
BspTI CTTAAG 1 cut(s) 659
BspTNI GGTCTC 1 cut(s) 1039
BsrGI TGTACA 1 cut(s) 257
BsrI ACTGG 2 cut(s) 237, 392
BssECI CCNNGG 3 cut(s) 269, 619, 1102
BssMI GATC 4 cut(s) 72, 385, 685, 877
BssT1I CCWWGG 2 cut(s) 269, 1102
Bst2UI CCWGG 1 cut(s) 131
Bst4CI ACNGT 6 cut(s) 69, 439, 508, 525, 1044, 1269
Bst6I CTCTTC 2 cut(s) 95, 887
BstAFI CTTAAG 1 cut(s) 659
BstAUI TGTACA 1 cut(s) 257
BstC8I GCNNGC 1 cut(s) 697
BstDEI CTNAG 6 cut(s) 17, 309, 399, 689, 908, 1322
BstDSI CCRYGG 1 cut(s) 619
BstF5I GGATG 4 cut(s) 265, 565, 763, 1095
BstFNI CGCG 1 cut(s) 621
BstKTI GATC 4 cut(s) 75, 388, 688, 880
BstMAI GTCTC 5 cut(s) 152, 889, 1039, 1193, 1235
BstMBI GATC 4 cut(s) 72, 385, 685, 877
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstNI CCWGG 1 cut(s) 131
BstNSI RCATGY 2 cut(s) 286, 699
BstSCI CCNGG 1 cut(s) 129
BstSFI CTRYAG 2 cut(s) 162, 865
BstSLI GKGCMC 1 cut(s) 457
BstUI CGCG 1 cut(s) 621
BstV1I GCAGC 1 cut(s) 1285
BstV2I GAAGAC 1 cut(s) 503
BstX2I RGATCY 1 cut(s) 685
BstYI RGATCY 1 cut(s) 685
BsuI GTATCC 1 cut(s) 1327
BsuRI GGCC 2 cut(s) 106, 129
BtgI CCRYGG 1 cut(s) 619
BtgZI GCGATG 1 cut(s) 263
BtsCI GGATG 4 cut(s) 265, 565, 763, 1095
BtsIMutI CAGTG 1 cut(s) 65
Cac8I GCNNGC 1 cut(s) 697
CaiI CAGNNNCTG 1 cut(s) 398
CciI TCATGA 2 cut(s) 198, 301
Cfr13I GGNCC 1 cut(s) 848
Cfr42I CCGCGG 1 cut(s) 622
CseI GACGC 2 cut(s) 222, 1217
Csp6I GTAC 5 cut(s) 240, 258, 1112, 1237, 1297
CviAII CATG 6 cut(s) 199, 283, 302, 696, 919, 999
CviQI GTAC 5 cut(s) 240, 258, 1112, 1237, 1297
DdeI CTNAG 6 cut(s) 17, 309, 399, 689, 908, 1322
DpnI GATC 4 cut(s) 74, 387, 687, 879
DpnII GATC 4 cut(s) 72, 385, 685, 877
DraI TTTAAA 1 cut(s) 228
EaeI YGGCCR 1 cut(s) 127
Eam1104I CTCTTC 2 cut(s) 95, 887
EarI CTCTTC 2 cut(s) 95, 887
Eco130I CCWWGG 2 cut(s) 269, 1102
Eco147I AGGCCT 1 cut(s) 106
Eco24I GRGCYC 1 cut(s) 592
Eco31I GGTCTC 1 cut(s) 1039
Eco32I GATATC 1 cut(s) 727
Eco47I GGWCC 1 cut(s) 848
Eco57I CTGAAG 5 cut(s) 68, 614, 633, 954, 1224
EcoRII CCWGG 1 cut(s) 129
EcoRV GATATC 1 cut(s) 727
EcoT14I CCWWGG 2 cut(s) 269, 1102
EcoT38I GRGCYC 1 cut(s) 592
ErhI CCWWGG 2 cut(s) 269, 1102
Esp3I CGTCTC 1 cut(s) 1235
FaeI CATG 6 cut(s) 202, 286, 305, 699, 922, 1002
FalI AAGNNNNNCTT 2 cut(s) 297, 329
FaqI GGGAC 2 cut(s) 380, 534
FatI CATG 6 cut(s) 198, 282, 301, 695, 918, 998
FauNDI CATATG 1 cut(s) 1339
FbaI TGATCA 1 cut(s) 385
Fnu4HI GCNGC 3 cut(s) 905, 985, 1274
FokI GGATG 4 cut(s) 252, 572, 770, 1082
FriOI GRGCYC 1 cut(s) 592
Fsp4HI GCNGC 3 cut(s) 905, 985, 1274
FspBI CTAG 4 cut(s) 683, 1103, 1131, 1414
GluI GCNGC 3 cut(s) 905, 985, 1274
GsaI CCCAGC 1 cut(s) 521
GsuI CTGGAG 3 cut(s) 393, 497, 1271
HaeIII GGCC 2 cut(s) 106, 129
HgaI GACGC 2 cut(s) 222, 1217
Hin1II CATG 6 cut(s) 202, 286, 305, 699, 922, 1002
HincII GTYRAC 1 cut(s) 630
HindII GTYRAC 1 cut(s) 630
HinfI GANTC 5 cut(s) 214, 274, 974, 1189, 1324
HphI GGTGA 1 cut(s) 887
Hpy166II GTNNAC 1 cut(s) 630
Hpy188I TCNGA 6 cut(s) 690, 724, 766, 852, 1323, 1384
Hpy188III TCNNGA 7 cut(s) 80, 121, 199, 302, 330, 683, 827
Hpy8I GTNNAC 1 cut(s) 630
HpyAV CCTTC 6 cut(s) 337, 657, 729, 824, 1024, 1364
HpyCH4III ACNGT 6 cut(s) 69, 439, 508, 525, 1044, 1269
HpyCH4V TGCA 4 cut(s) 164, 207, 867, 1273
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
HpyF3I CTNAG 6 cut(s) 17, 309, 399, 689, 908, 1322
Hsp92II CATG 6 cut(s) 202, 286, 305, 699, 922, 1002
Ksp22I TGATCA 1 cut(s) 385
KspI CCGCGG 1 cut(s) 622
Kzo9I GATC 4 cut(s) 72, 385, 685, 877
LmnI GCTCC 4 cut(s) 587, 648, 1018, 1359
Lsp1109I GCAGC 1 cut(s) 1285
LweI GCATC 2 cut(s) 48, 1104
MaeI CTAG 4 cut(s) 683, 1103, 1131, 1414
MaeIII GTNAC 3 cut(s) 139, 402, 770
MalI GATC 4 cut(s) 74, 387, 687, 879
MboI GATC 4 cut(s) 72, 385, 685, 877
MboII GAAGA 7 cut(s) 61, 112, 191, 508, 904, 1153, 1217
MfeI CAATTG 1 cut(s) 633
MflI RGATCY 1 cut(s) 685
MhlI GDGCHC 3 cut(s) 149, 457, 592
MlsI TGGCCA 1 cut(s) 129
MluNI TGGCCA 1 cut(s) 129
MlyI GAGTC 1 cut(s) 1333
MmeI TCCRAC 1 cut(s) 942
Mox20I TGGCCA 1 cut(s) 129
MscI TGGCCA 1 cut(s) 129
MseI TTAA 7 cut(s) 227, 377, 660, 939, 1049, 1148, 1241
MslI CAYNNNNRTG 5 cut(s) 228, 287, 554, 756, 917
Msp20I TGGCCA 1 cut(s) 129
MspA1I CMGCKG 3 cut(s) 413, 517, 621
MspCI CTTAAG 1 cut(s) 659
MspR9I CCNGG 1 cut(s) 131
MunI CAATTG 1 cut(s) 633
MvaI CCWGG 1 cut(s) 131
MvnI CGCG 1 cut(s) 621
MwoI GCNNNNNNNGC 1 cut(s) 305
NdeI CATATG 1 cut(s) 1339
NdeII GATC 4 cut(s) 72, 385, 685, 877
NlaIII CATG 6 cut(s) 202, 286, 305, 699, 922, 1002
NlaIV GGNNCC 1 cut(s) 589
NspI RCATGY 2 cut(s) 286, 699
PaeI GCATGC 1 cut(s) 699
PagI TCATGA 2 cut(s) 198, 301
PceI AGGCCT 1 cut(s) 106
PfeI GAWTC 4 cut(s) 214, 274, 974, 1189
PflMI CCANNNNNTGG 1 cut(s) 706
PkrI GCNGC 3 cut(s) 906, 986, 1275
PleI GAGTC 1 cut(s) 1332
PpsI GAGTC 1 cut(s) 1332
Psp6I CCWGG 1 cut(s) 129
PspFI CCCAGC 1 cut(s) 517
PspGI CCWGG 1 cut(s) 129
PspN4I GGNNCC 1 cut(s) 589
PspPI GGNCC 1 cut(s) 848
PstI CTGCAG 2 cut(s) 166, 869
PstNI CAGNNNCTG 1 cut(s) 398
PsuI RGATCY 1 cut(s) 685
PvuII CAGCTG 2 cut(s) 413, 517
RsaI GTAC 5 cut(s) 241, 259, 1113, 1238, 1298
RsaNI GTAC 5 cut(s) 240, 258, 1112, 1237, 1297
RseI CAYNNNNRTG 5 cut(s) 228, 287, 554, 756, 917
SacII CCGCGG 1 cut(s) 622
SaqAI TTAA 7 cut(s) 227, 377, 660, 939, 1049, 1148, 1241
SatI GCNGC 3 cut(s) 905, 985, 1274
Sau3AI GATC 4 cut(s) 72, 385, 685, 877
Sau96I GGNCC 1 cut(s) 848
ScaI AGTACT 2 cut(s) 241, 1238
SchI GAGTC 1 cut(s) 1333
ScrFI CCNGG 1 cut(s) 131
SduI GDGCHC 3 cut(s) 149, 457, 592
SfaNI GCATC 2 cut(s) 48, 1104
SfcI CTRYAG 2 cut(s) 162, 865
Sfr303I CCGCGG 1 cut(s) 622
SgrBI CCGCGG 1 cut(s) 622
SinI GGWCC 1 cut(s) 848
SmiI ATTTAAAT 1 cut(s) 228
SmiMI CAYNNNNRTG 5 cut(s) 228, 287, 554, 756, 917
SmlI CTYRAG 2 cut(s) 659, 1232
SmoI CTYRAG 2 cut(s) 659, 1232
SphI GCATGC 1 cut(s) 699
SseBI AGGCCT 1 cut(s) 106
SsiI CCGC 5 cut(s) 619, 621, 904, 985, 1294
SspMI CTAG 4 cut(s) 683, 1103, 1131, 1414
StuI AGGCCT 1 cut(s) 106
StyD4I CCNGG 1 cut(s) 129
StyI CCWWGG 2 cut(s) 269, 1102
SwaI ATTTAAAT 1 cut(s) 228
TaaI ACNGT 6 cut(s) 69, 439, 508, 525, 1044, 1269
TaqI TCGA 6 cut(s) 42, 71, 318, 420, 536, 1311
TatI WGTACW 3 cut(s) 239, 257, 1236
TauI GCSGC 2 cut(s) 907, 987
TfiI GAWTC 4 cut(s) 214, 274, 974, 1189
Tru1I TTAA 7 cut(s) 227, 377, 660, 939, 1049, 1148, 1241
Tru9I TTAA 7 cut(s) 227, 377, 660, 939, 1049, 1148, 1241
TscAI CASTG 1 cut(s) 72
TseI GCWGC 1 cut(s) 1273
TspDTI ATGAA 4 cut(s) 266, 318, 368, 579
TspRI CASTG 1 cut(s) 72
Van91I CCANNNNNTGG 1 cut(s) 706
Vha464I CTTAAG 1 cut(s) 659
VpaK11BI GGWCC 1 cut(s) 848
XapI RAATTY 1 cut(s) 678
XbaI TCTAGA 1 cut(s) 682
XceI RCATGY 2 cut(s) 286, 699
XmaJI CCTAGG 1 cut(s) 1102
XspI CTAG 4 cut(s) 683, 1103, 1131, 1414
ZrmI AGTACT 2 cut(s) 241, 1238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.