Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000917

Physical Location & Seq

Genomic Coordinates Forward (+)

24425378 .. 24426429

Gene Structure 1052 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018014

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGAACAGGATCTGGCAATGTGTTTTCAAGAGGCGTATGGAAATATGGGAAATCTTGTGCAACGTGTCGAAAAATTTGGACAAATCGAGAAGTGCCTTCTTTTTGAGTCAAGAAATTGTTGAGCGAACTATTCGTAGTCTTATCAGCCTTGAAATTCTCGATCTGAGAGCATGCCATGACCTGGAGAGATTGCCAGCAGACGTCTCATCATTGAAGAAGCTCACGCTTTTGGATATAGCAGTGTGTTACTTACTAGGAGGCATGCCCAAAGGGCTTCACAAACTTTCTTCCCTGCAAGTACTTAAAGGTTTTCTGATAGGATCACAGGAAAAAACTCCCACCAAACTTGGTGAACTTGCCACATTGAAGAAGCTAAGGAGGCTCAGCATACACATTGGGAATGGGGCTGTAATTCAAGCAGGGGATTTCAAACTGTTGAAAGATATGTCATCTCTTTGCTTCCTGAAAGTATCATGGGGTGTGGTTTCTAAAAATTTGACAAAGGACATTGATGATGAGTCCTCGAAACTCTTGTTTCCAGAGAATTTAGAAAAATTGGATCTTCAAGGGTTTCCTCGAGCAAATGCAACAGAAGGGTTGAAGCCTAGCAAACTGAAAAATTTAAAGAAGCTCTATATAAGGGGAGGAGAACTTAAGAGCTTGGATCATGGGGAAAATGAGCCGTGGGAAGTGGAAATCTTGCGTCTTCAAGTACTTGAAGAATTTCAGCATAAACTCAGCAGAAGTGAGAGAACTTTTCCTCATCTGAAGTACTGGACAGTGGATGAAAAGAACCTCAGTAAAGCTGAAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

272

Amino Acids

30.95

Weight (kDa)

9.25

Isoelectric Point (pI)

43.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	42 - 220	1.2e-15	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000917)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g29201 FvH4_6g29201 FvH4_6g29201
malus_domestica	MD09G1222600.v1.1
prunus_persica	Prupe.3G175600_v2.0.a1 Prupe.3G175600_v2.0.a1 Prupe.3G176100_v2.0.a1 Prupe.4G057900_v2.0.a1
pyrus_communis	pycom808g00780
rosa_chinensis	RchiOBHm_Chr2g0111461 RchiOBHm_Chr2g0112821 RchiOBHm_Chr2g0151861 RchiOBHm_Chr2g0152221
rosa_laevigata	RLG00000018013 RLG00000018014 RLG00000020584 RLG00000020617
rosa_multiflora	Rmu_co8270923.1_g000001 Rmu_sc0001687.1_g000009 Rmu_sc0002351.1_g000014 Rmu_sc0003043.1_g000010 Rmu_sc0004286.1_g000015 Rmu_sc0005294.1_g000017 Rmu_sc0005791.1_g000005 Rmu_sc0006226.1_g000001 Rmu_sc0008578.1_g000006 Rmu_sc0017895.1_g000007 Rmu_sc0023925.1_g000005 Rmu_ssc0000400.1_g000039
rosa_roxburghii	Rroxscaffold_2G00096130 Rroxscaffold_2G00131120 Rroxscaffold_4G00302580 Rroxscaffold_7G00189350
rosa_rugosa	Rorug02G0174500 Rorug02G0182800 Rorug02G0429200 Rorug02G0429600.1 Rorug02G0431300 Rorug02G0431400 Rorug02G0431500
rosa_samantha	Rh2AG227200 Rh2AG237600 Rh2AG490200 Rh2AG490400 Rh2AG492800 Rh2BG239000 Rh2BG250300 Rh2BG502600 Rh2BG505400 Rh2CG230800 Rh2CG241400 Rh2CG476500 Rh2CG476800 Rh2CG479200 Rh2DG234800 Rh2DG245100 Rh2DG513800 Rh2DG516600
rosa_wichuraiana	Rw0G018020 Rw0G020240 Rw2G018600 Rw2G040180 Rw2G040300 Rw2G040500 Rw2G040520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	204
AccB7I	CCANNNNNTGG	1 cut(s)	181
AclWI	GGATC	4 cut(s)	17, 328, 567, 672
AcsI	RAATTY	6 cut(s)	73, 153, 493, 544, 619, 722
AcuI	CTGAAG	1 cut(s)	788
AcyI	GRCGYC	1 cut(s)	201
AfaI	GTAC	3 cut(s)	300, 714, 773
AfiI	CCNNNNNNNGG	1 cut(s)	181
AflII	CTTAAG	1 cut(s)	653
AflIII	ACRYGT	1 cut(s)	63
AjnI	CCWGG	1 cut(s)	180
AluBI	AGCT	5 cut(s)	220, 373, 631, 660, 806
AluI	AGCT	5 cut(s)	220, 373, 631, 660, 806
Alw26I	GTCTC	1 cut(s)	208
AlwI	GGATC	4 cut(s)	17, 328, 567, 672
AlwNI	CAGNNNCTG	1 cut(s)	12
Ama87I	CYCGRG	1 cut(s)	576
ApoI	RAATTY	6 cut(s)	73, 153, 493, 544, 619, 722
Asp700I	GAANNNNTTC	1 cut(s)	723
AsuHPI	GGTGA	1 cut(s)	362
AvaI	CYCGRG	1 cut(s)	576
BbsI	GAAGAC	1 cut(s)	698
BceAI	ACGGC	1 cut(s)	667
BciT130I	CCWGG	1 cut(s)	182
BcoDI	GTCTC	1 cut(s)	208
BfaI	CTAG	3 cut(s)	254, 606, 814
BfrI	CTTAAG	1 cut(s)	653
BglI	GCCNNNNNGGC	1 cut(s)	271
BlpI	GCTNAGC	1 cut(s)	383
BmcAI	AGTACT	3 cut(s)	300, 714, 773
Bme1390I	CCNGG	1 cut(s)	182
BmeT110I	CYCGRG	1 cut(s)	576
BmrFI	CCNGG	1 cut(s)	182
BpiI	GAAGAC	1 cut(s)	698
BpmI	CTGGAG	1 cut(s)	203
Bpu10I	CCTNAGC	1 cut(s)	374
Bpu1102I	GCTNAGC	1 cut(s)	383
BsaHI	GRCGYC	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	683
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
Bse1I	ACTGG	1 cut(s)	779
Bse3DI	GCAATG	1 cut(s)	23
BseBI	CCWGG	1 cut(s)	182
BseDI	CCNNGG	1 cut(s)	683
BseGI	GGATG	1 cut(s)	790
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMI	GCAATG	1 cut(s)	23
BseMII	CTCAG	4 cut(s)	155, 397, 751, 811
BseNI	ACTGG	1 cut(s)	779
BseRI	GAGGAG	1 cut(s)	660
BsiHKCI	CYCGRG	1 cut(s)	576
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmAI	GTCTC	1 cut(s)	208
BsmBI	CGTCTC	1 cut(s)	208
BsoBI	CYCGRG	1 cut(s)	576
Bsp143I	GATC	5 cut(s)	9, 160, 320, 559, 664
Bsp1720I	GCTNAGC	1 cut(s)	383
BspCNI	CTCAG	4 cut(s)	156, 396, 750, 810
BspPI	GGATC	4 cut(s)	17, 328, 567, 672
BspTI	CTTAAG	1 cut(s)	653
BsrDI	GCAATG	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	779
BssECI	CCNNGG	1 cut(s)	683
BssMI	GATC	5 cut(s)	9, 160, 320, 559, 664
BssNI	GRCGYC	1 cut(s)	201
Bst2UI	CCWGG	1 cut(s)	182
Bst4CI	ACNGT	2 cut(s)	435, 781
BstACI	GRCGYC	1 cut(s)	201
BstAFI	CTTAAG	1 cut(s)	653
BstC8I	GCNNGC	3 cut(s)	172, 195, 263
BstDEI	CTNAG	5 cut(s)	164, 374, 383, 737, 797
BstDSI	CCRYGG	1 cut(s)	683
BstF5I	GGATG	1 cut(s)	790
BstKTI	GATC	5 cut(s)	12, 163, 323, 562, 667
BstMAI	GTCTC	1 cut(s)	208
BstMBI	GATC	5 cut(s)	9, 160, 320, 559, 664
BstMWI	GCNNNNNNNGC	2 cut(s)	271, 379
BstNI	CCWGG	1 cut(s)	182
BstNSI	RCATGY	2 cut(s)	174, 265
BstSCI	CCNGG	1 cut(s)	180
BstV2I	GAAGAC	1 cut(s)	698
BstX2I	RGATCY	2 cut(s)	9, 559
BstYI	RGATCY	2 cut(s)	9, 559
BtgI	CCRYGG	1 cut(s)	683
BtsCI	GGATG	1 cut(s)	790
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	2 cut(s)	246, 786
Cac8I	GCNNGC	3 cut(s)	172, 195, 263
CaiI	CAGNNNCTG	1 cut(s)	12
CseI	GACGC	1 cut(s)	692
Csp6I	GTAC	3 cut(s)	299, 713, 772
CspCI	CAANNNNNGTGG	2 cut(s)	328, 363
CviAII	CATG	5 cut(s)	171, 176, 262, 474, 668
CviQI	GTAC	3 cut(s)	299, 713, 772
DdeI	CTNAG	5 cut(s)	164, 374, 383, 737, 797
DpnI	GATC	5 cut(s)	11, 162, 322, 561, 666
DpnII	GATC	5 cut(s)	9, 160, 320, 559, 664
DraI	TTTAAA	1 cut(s)	624
Eco57I	CTGAAG	1 cut(s)	788
Eco88I	CYCGRG	1 cut(s)	576
EcoRII	CCWGG	1 cut(s)	180
Esp3I	CGTCTC	1 cut(s)	208
FaeI	CATG	5 cut(s)	174, 179, 265, 477, 671
FatI	CATG	5 cut(s)	170, 175, 261, 473, 667
FokI	GGATG	1 cut(s)	797
FspBI	CTAG	3 cut(s)	254, 606, 814
GsuI	CTGGAG	1 cut(s)	203
HgaI	GACGC	1 cut(s)	692
Hin1I	GRCGYC	1 cut(s)	201
Hin1II	CATG	5 cut(s)	174, 179, 265, 477, 671
HinfI	GANTC	2 cut(s)	106, 518
HphI	GGTGA	1 cut(s)	362
Hpy166II	GTNNAC	1 cut(s)	353
Hpy188I	TCNGA	3 cut(s)	165, 315, 768
Hpy188III	TCNNGA	6 cut(s)	28, 87, 110, 158, 463, 539
Hpy8I	GTNNAC	1 cut(s)	353
HpyAV	CCTTC	3 cut(s)	106, 587, 803
HpyCH4III	ACNGT	2 cut(s)	435, 781
HpyCH4IV	ACGT	2 cut(s)	63, 201
HpyCH4V	TGCA	3 cut(s)	60, 295, 587
HpyF10VI	GCNNNNNNNGC	2 cut(s)	271, 379
HpyF3I	CTNAG	5 cut(s)	164, 374, 383, 737, 797
HpySE526I	ACGT	2 cut(s)	63, 201
Hsp92I	GRCGYC	1 cut(s)	201
Hsp92II	CATG	5 cut(s)	174, 179, 265, 477, 671
Kzo9I	GATC	5 cut(s)	9, 160, 320, 559, 664
LpnPI	CCDG	9 cut(s)	167, 194, 207, 305, 311, 405, 476, 552, 760
MaeI	CTAG	3 cut(s)	254, 606, 814
MaeII	ACGT	2 cut(s)	63, 201
MaeIII	GTNAC	1 cut(s)	245
MalI	GATC	5 cut(s)	11, 162, 322, 561, 666
MboI	GATC	5 cut(s)	9, 160, 320, 559, 664
MboII	GAAGA	6 cut(s)	226, 279, 379, 554, 698, 731
MflI	RGATCY	2 cut(s)	9, 559
MluCI	AATT	9 cut(s)	73, 114, 153, 411, 493, 544, 554, 619, 722
MlyI	GAGTC	2 cut(s)	115, 527
MnlI	CCTC	8 cut(s)	24, 251, 372, 532, 585, 638, 771, 806
MroXI	GAANNNNTTC	1 cut(s)	723
MseI	TTAA	3 cut(s)	303, 623, 654
MspCI	CTTAAG	1 cut(s)	653
MspR9I	CCNGG	1 cut(s)	182
MvaI	CCWGG	1 cut(s)	182
MwoI	GCNNNNNNNGC	2 cut(s)	271, 379
NdeII	GATC	5 cut(s)	9, 160, 320, 559, 664
NlaIII	CATG	5 cut(s)	174, 179, 265, 477, 671
NspI	RCATGY	2 cut(s)	174, 265
PaeI	GCATGC	2 cut(s)	174, 265
PaeR7I	CTCGAG	1 cut(s)	576
PdmI	GAANNNNTTC	1 cut(s)	723
PflMI	CCANNNNNTGG	1 cut(s)	181
PleI	GAGTC	2 cut(s)	114, 526
PpsI	GAGTC	2 cut(s)	114, 526
Psp6I	CCWGG	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	180
PspXI	VCTCGAGB	1 cut(s)	576
PstNI	CAGNNNCTG	1 cut(s)	12
PsuI	RGATCY	2 cut(s)	9, 559
RsaI	GTAC	3 cut(s)	300, 714, 773
RsaNI	GTAC	3 cut(s)	299, 713, 772
SaqAI	TTAA	3 cut(s)	303, 623, 654
Sau3AI	GATC	5 cut(s)	9, 160, 320, 559, 664
ScaI	AGTACT	3 cut(s)	300, 714, 773
SchI	GAGTC	2 cut(s)	115, 527
ScrFI	CCNGG	1 cut(s)	182
Sfr274I	CTCGAG	1 cut(s)	576
SlaI	CTCGAG	1 cut(s)	576
SmlI	CTYRAG	2 cut(s)	576, 653
SmoI	CTYRAG	2 cut(s)	576, 653
SphI	GCATGC	2 cut(s)	174, 265
Sse9I	AATT	9 cut(s)	73, 114, 153, 411, 493, 544, 554, 619, 722
SspMI	CTAG	3 cut(s)	254, 606, 814
StyD4I	CCNGG	1 cut(s)	180
TaaI	ACNGT	2 cut(s)	435, 781
TaiI	ACGT	2 cut(s)	66, 204
TaqI	TCGA	5 cut(s)	68, 86, 159, 524, 577
TasI	AATT	9 cut(s)	73, 114, 153, 411, 493, 544, 554, 619, 722
TatI	WGTACW	3 cut(s)	298, 712, 771
Tru1I	TTAA	3 cut(s)	303, 623, 654
Tru9I	TTAA	3 cut(s)	303, 623, 654
TscAI	CASTG	2 cut(s)	246, 786
TspDTI	ATGAA	2 cut(s)	17, 801
TspRI	CASTG	2 cut(s)	246, 786
Van91I	CCANNNNNTGG	1 cut(s)	181
Vha464I	CTTAAG	1 cut(s)	653
XapI	RAATTY	6 cut(s)	73, 153, 493, 544, 619, 722
XceI	RCATGY	2 cut(s)	174, 265
XhoI	CTCGAG	1 cut(s)	576
XmnI	GAANNNNTTC	1 cut(s)	723
XspI	CTAG	3 cut(s)	254, 606, 814
ZraI	GACGTC	1 cut(s)	202
ZrmI	AGTACT	3 cut(s)	300, 714, 773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.