Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000400.1

Orthogroup ID

OG0000917

Physical Location & Seq

Genomic Coordinates Reverse (-)

174031 .. 174654

Gene Structure 624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000400.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

atggtctacatggtctttttttttgggtctgttcttcctttcacatttgtgcaatgcttagcaaaggagataggagaagacatctttgcaaaactcttgagaaaggacttgattcaaccagctccaggtcagtccaactgtgaattacttgtgaaaaattgttgtgttcacccttggattcgtcgtatgttgatctccttggctagagaggctaagctgttcaacttcgatcccaaatggccaatgatgccatttggttctatatcaacttgtaggcgttcatgtttagtttctaaggagggtaagtcaataactcctcatggtgatgatcaattgaaaaatctattgacagtattcaatgtaaacgttaaatatcttgatttgaaacaagaatggctcgacaagttgaagagggttgaagttcttcactttggacggtggcagagctcccccaaatatcacattgaagtggatcagaaaacatttgatggttcacaagctgtattatccaactgcaaaatagaaaacaagacccaattatccaactgcaaaatcgaaaacaaaatccaagtacaaagtcgggactcgggaggagattacaatccaaaatcccaaatcgaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

207

Amino Acids

23.85

Weight (kDa)

8.98

Isoelectric Point (pI)

58.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000917)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g29201 FvH4_6g29201 FvH4_6g29201
malus_domestica	MD09G1222600.v1.1
prunus_persica	Prupe.3G175600_v2.0.a1 Prupe.3G175600_v2.0.a1 Prupe.3G176100_v2.0.a1 Prupe.4G057900_v2.0.a1
pyrus_communis	pycom808g00780
rosa_chinensis	RchiOBHm_Chr2g0111461 RchiOBHm_Chr2g0112821 RchiOBHm_Chr2g0151861 RchiOBHm_Chr2g0152221
rosa_laevigata	RLG00000018013 RLG00000018014 RLG00000020584 RLG00000020617
rosa_multiflora	Rmu_co8270923.1_g000001 Rmu_sc0001687.1_g000009 Rmu_sc0002351.1_g000014 Rmu_sc0003043.1_g000010 Rmu_sc0004286.1_g000015 Rmu_sc0005294.1_g000017 Rmu_sc0005791.1_g000005 Rmu_sc0006226.1_g000001 Rmu_sc0008578.1_g000006 Rmu_sc0017895.1_g000007 Rmu_sc0023925.1_g000005 Rmu_ssc0000400.1_g000039
rosa_roxburghii	Rroxscaffold_2G00096130 Rroxscaffold_2G00131120 Rroxscaffold_4G00302580 Rroxscaffold_7G00189350
rosa_rugosa	Rorug02G0174500 Rorug02G0182800 Rorug02G0429200 Rorug02G0429600.1 Rorug02G0431300 Rorug02G0431400 Rorug02G0431500
rosa_samantha	Rh2AG227200 Rh2AG237600 Rh2AG490200 Rh2AG490400 Rh2AG492800 Rh2BG239000 Rh2BG250300 Rh2BG502600 Rh2BG505400 Rh2CG230800 Rh2CG241400 Rh2CG476500 Rh2CG476800 Rh2CG479200 Rh2DG234800 Rh2DG245100 Rh2DG513800 Rh2DG516600
rosa_wichuraiana	Rw0G018020 Rw0G020240 Rw2G018600 Rw2G040180 Rw2G040300 Rw2G040500 Rw2G040520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	6
AclI	AACGTT	1 cut(s)	366
AclWI	GGATC	2 cut(s)	224, 480
AcoI	YGGCCR	1 cut(s)	239
AfaI	GTAC	1 cut(s)	573
AfiI	CCNNNNNNNGG	1 cut(s)	125
AgsI	TTSAA	8 cut(s)	116, 223, 337, 358, 385, 409, 419, 467
AjnI	CCWGG	1 cut(s)	124
AleI	CACNNNNGTG	1 cut(s)	47
AluBI	AGCT	4 cut(s)	122, 217, 447, 500
AluI	AGCT	4 cut(s)	122, 217, 447, 500
Alw21I	GWGCWC	1 cut(s)	449
AlwI	GGATC	2 cut(s)	224, 480
Ama87I	CYCGRG	1 cut(s)	586
AoxI	GGCC	1 cut(s)	239
Asp700I	GAANNNNTTC	1 cut(s)	423
AsuHPI	GGTGA	2 cut(s)	161, 335
AvaI	CYCGRG	1 cut(s)	586
BalI	TGGCCA	1 cut(s)	241
BanII	GRGCYC	1 cut(s)	449
BbsI	GAAGAC	1 cut(s)	84
Bbv12I	GWGCWC	1 cut(s)	449
BccI	CCATC	1 cut(s)	482
BciT130I	CCWGG	1 cut(s)	126
BclI	TGATCA	1 cut(s)	328
BfaI	CTAG	1 cut(s)	204
BlpI	GCTNAGC	2 cut(s)	58, 213
Bme1390I	CCNGG	1 cut(s)	126
BmeT110I	CYCGRG	1 cut(s)	586
BmrFI	CCNGG	1 cut(s)	126
BmsI	GCATC	1 cut(s)	237
BpiI	GAAGAC	1 cut(s)	84
BpmI	CTGGAG	1 cut(s)	108
Bpu1102I	GCTNAGC	2 cut(s)	58, 213
BpuEI	CTTGAG	1 cut(s)	118
BsaBI	GATNNNNATC	1 cut(s)	600
BsaJI	CCNNGG	2 cut(s)	173, 198
BsaXI	ACNNNNNCTCC	2 cut(s)	290, 320
Bsc4I	CCNNNNNNNGG	1 cut(s)	125
Bse3DI	GCAATG	1 cut(s)	59
Bse8I	GATNNNNATC	1 cut(s)	600
BseBI	CCWGG	1 cut(s)	126
BseDI	CCNNGG	2 cut(s)	173, 198
BseJI	GATNNNNATC	1 cut(s)	600
BseLI	CCNNNNNNNGG	1 cut(s)	125
BseMI	GCAATG	1 cut(s)	59
BseRI	GAGGAG	2 cut(s)	306, 606
BshFI	GGCC	1 cut(s)	241
BsiHKAI	GWGCWC	1 cut(s)	449
BsiHKCI	CYCGRG	1 cut(s)	586
BslFI	GGGAC	1 cut(s)	596
BslI	CCNNNNNNNGG	1 cut(s)	125
BsmFI	GGGAC	1 cut(s)	596
BsnI	GGCC	1 cut(s)	241
BsoBI	CYCGRG	1 cut(s)	586
Bsp1286I	GDGCHC	1 cut(s)	449
Bsp143I	GATC	4 cut(s)	192, 229, 328, 472
Bsp1720I	GCTNAGC	2 cut(s)	58, 213
BspANI	GGCC	1 cut(s)	241
BspPI	GGATC	2 cut(s)	224, 480
BsrDI	GCAATG	1 cut(s)	59
BssECI	CCNNGG	2 cut(s)	173, 198
BssMI	GATC	4 cut(s)	192, 229, 328, 472
BssT1I	CCWWGG	2 cut(s)	173, 198
Bst2UI	CCWGG	1 cut(s)	126
Bst4CI	ACNGT	3 cut(s)	140, 352, 438
Bst6I	CTCTTC	1 cut(s)	404
BstDEI	CTNAG	3 cut(s)	58, 213, 294
BstKTI	GATC	4 cut(s)	195, 232, 331, 475
BstMBI	GATC	4 cut(s)	192, 229, 328, 472
BstMWI	GCNNNNNNNGC	2 cut(s)	209, 247
BstNI	CCWGG	1 cut(s)	126
BstSCI	CCNGG	1 cut(s)	124
BstV2I	GAAGAC	1 cut(s)	84
BsuRI	GGCC	1 cut(s)	241
Csp6I	GTAC	1 cut(s)	572
CviAII	CATG	3 cut(s)	10, 282, 320
CviJI	RGCY	8 cut(s)	122, 203, 212, 217, 241, 397, 447, 500
CviKI_1	RGCY	8 cut(s)	122, 203, 212, 217, 241, 397, 447, 500
CviQI	GTAC	1 cut(s)	572
DdeI	CTNAG	3 cut(s)	58, 213, 294
DpnI	GATC	4 cut(s)	194, 231, 330, 474
DpnII	GATC	4 cut(s)	192, 229, 328, 472
EaeI	YGGCCR	1 cut(s)	239
Eam1104I	CTCTTC	1 cut(s)	404
EarI	CTCTTC	1 cut(s)	404
Ecl136II	GAGCTC	1 cut(s)	447
Eco130I	CCWWGG	2 cut(s)	173, 198
Eco24I	GRGCYC	1 cut(s)	449
Eco53kI	GAGCTC	1 cut(s)	447
Eco88I	CYCGRG	1 cut(s)	586
EcoICRI	GAGCTC	1 cut(s)	447
EcoRII	CCWGG	1 cut(s)	124
EcoT14I	CCWWGG	2 cut(s)	173, 198
EcoT38I	GRGCYC	1 cut(s)	449
ErhI	CCWWGG	2 cut(s)	173, 198
FaeI	CATG	3 cut(s)	13, 285, 323
FaiI	YATR	5 cut(s)	11, 188, 263, 283, 321
FaqI	GGGAC	1 cut(s)	596
FatI	CATG	3 cut(s)	9, 281, 319
FbaI	TGATCA	1 cut(s)	328
FblI	GTMKAC	1 cut(s)	6
FriOI	GRGCYC	1 cut(s)	449
FspBI	CTAG	1 cut(s)	204
GsuI	CTGGAG	1 cut(s)	108
HaeIII	GGCC	1 cut(s)	241
Hin1II	CATG	3 cut(s)	13, 285, 323
HinfI	GANTC	3 cut(s)	112, 178, 584
HphI	GGTGA	2 cut(s)	161, 335
Hpy166II	GTNNAC	4 cut(s)	7, 169, 364, 494
Hpy188I	TCNGA	1 cut(s)	477
Hpy188III	TCNNGA	4 cut(s)	97, 377, 581, 588
Hpy8I	GTNNAC	4 cut(s)	7, 169, 364, 494
Hpy99I	CGWCG	1 cut(s)	186
HpyCH4III	ACNGT	3 cut(s)	140, 352, 438
HpyCH4IV	ACGT	1 cut(s)	366
HpyCH4V	TGCA	4 cut(s)	52, 89, 516, 549
HpyF10VI	GCNNNNNNNGC	2 cut(s)	209, 247
HpyF3I	CTNAG	3 cut(s)	58, 213, 294
HpySE526I	ACGT	1 cut(s)	366
Hsp92II	CATG	3 cut(s)	13, 285, 323
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	4 cut(s)	192, 229, 328, 472
LmnI	GCTCC	2 cut(s)	127, 452
LpnPI	CCDG	3 cut(s)	111, 132, 138
LweI	GCATC	1 cut(s)	237
MaeI	CTAG	1 cut(s)	204
MaeII	ACGT	1 cut(s)	366
MalI	GATC	4 cut(s)	194, 231, 330, 474
MboI	GATC	4 cut(s)	192, 229, 328, 472
MboII	GAAGA	4 cut(s)	26, 89, 416, 421
MfeI	CAATTG	1 cut(s)	332
MhlI	GDGCHC	1 cut(s)	449
MlsI	TGGCCA	1 cut(s)	241
MluCI	AATT	4 cut(s)	143, 157, 332, 536
MluNI	TGGCCA	1 cut(s)	241
MlyI	GAGTC	1 cut(s)	578
MmeI	TCCRAC	3 cut(s)	159, 534, 567
MnlI	CCTC	5 cut(s)	202, 292, 327, 405, 584
Mox20I	TGGCCA	1 cut(s)	241
MroXI	GAANNNNTTC	1 cut(s)	423
MscI	TGGCCA	1 cut(s)	241
MseI	TTAA	1 cut(s)	369
MslI	CAYNNNNRTG	3 cut(s)	47, 324, 467
Msp20I	TGGCCA	1 cut(s)	241
MspR9I	CCNGG	1 cut(s)	126
MunI	CAATTG	1 cut(s)	332
MvaI	CCWGG	1 cut(s)	126
MwoI	GCNNNNNNNGC	2 cut(s)	209, 247
NdeII	GATC	4 cut(s)	192, 229, 328, 472
NlaIII	CATG	3 cut(s)	13, 285, 323
OliI	CACNNNNGTG	1 cut(s)	47
PdmI	GAANNNNTTC	1 cut(s)	423
PfeI	GAWTC	2 cut(s)	112, 178
PleI	GAGTC	1 cut(s)	578
PpsI	GAGTC	1 cut(s)	578
Psp124BI	GAGCTC	1 cut(s)	449
Psp1406I	AACGTT	1 cut(s)	366
Psp6I	CCWGG	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	124
RsaI	GTAC	1 cut(s)	573
RsaNI	GTAC	1 cut(s)	572
RseI	CAYNNNNRTG	3 cut(s)	47, 324, 467
SacI	GAGCTC	1 cut(s)	449
SaqAI	TTAA	1 cut(s)	369
Sau3AI	GATC	4 cut(s)	192, 229, 328, 472
SchI	GAGTC	1 cut(s)	578
ScrFI	CCNGG	1 cut(s)	126
SduI	GDGCHC	1 cut(s)	449
SetI	ASST	6 cut(s)	124, 130, 219, 369, 449, 502
SfaNI	GCATC	1 cut(s)	237
SmiMI	CAYNNNNRTG	3 cut(s)	47, 324, 467
SmlI	CTYRAG	1 cut(s)	97
SmoI	CTYRAG	1 cut(s)	97
Sse9I	AATT	4 cut(s)	143, 157, 332, 536
SspMI	CTAG	1 cut(s)	204
SstI	GAGCTC	1 cut(s)	449
StyD4I	CCNGG	1 cut(s)	124
StyI	CCWWGG	2 cut(s)	173, 198
TaaI	ACNGT	3 cut(s)	140, 352, 438
TaiI	ACGT	1 cut(s)	369
TaqI	TCGA	4 cut(s)	228, 399, 555, 618
TasI	AATT	4 cut(s)	143, 157, 332, 536
TatI	WGTACW	1 cut(s)	571
TfiI	GAWTC	2 cut(s)	112, 178
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TspDTI	ATGAA	1 cut(s)	270
XmiI	GTMKAC	1 cut(s)	6
XmnI	GAANNNNTTC	1 cut(s)	423
XspI	CTAG	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.