Rh2DG234800

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000917
Physical Location & Seq
Forward (+)
23363634 .. 23365530
1897 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG234800.1

Sequence Viewer

Length: 1470 bp
ATGCCAGAGAAGCAGTTAGATGTAACTCAAGAAATGTCAGAGGAGCGGCCAAGAATGGGCAAGGAAAAAGAATCTGATGTCATTGCCGACATCAGGAGGAGTTATGAAGACCTTGACGGCACGGAATTGAAGGTCTGCTTGCTTTCTTTGTCGATCTTCCCCGAAAATACTGCCAATAAGAAGAGGCCTCTAATCTACTGGTGGATAGGCGAGGGCTTCATCACATCTACCAAAGAGAAGAGAGCAGAAGAGATCGGAGAAGAAATCTTCGAAAAGCTCATGAGGAAGGACTTGATTCAACCAGGTGAAGGTGAGCCCAACTGTGAATTGTTTGTCAAAAGTTGTACTATGCACCCTTGGATTCGTCGCATGTTGATATCCTTGGCCAGTGAGGCTAGGCTATTCCACTTTGATTCAATATGGCCAATGATGCCATCTTATTACATTCCAACTTGTAGGCGCGCATGTTTAGTTTCTAAGGATCCAGTAAAAGTTGAACCAATTCCCGAGGGTGCTGAGTTGAATACTCTATTGACATTATTCAATGTAAATGTTCAATATCTTGATTTGGAACAAAAACGACTAGAGGAGTTGAAGAAGGTTGAGGTTCTTCAGCTTGGACGGTGGCAGAACTCGCCTACACATCACATTGAAGTGGAACATCGAAGATTTGTTGGTGCCTCATCAGCTGAGGGAATTCTAAATGGTTTGGGGGCTCAGACGTACTTGAAGTATCTAAGCCTCCGAGGAATATCGAGAATTACCCAACTCCCTGATTCCATCTTGAATCTTATCAGCCTCGAAATTCTCGATCTGAGAGCGTGTCACGACTTAGAGAGGTTACCTTCGGATATCTCTTCACTGAAGAAGCTCACACATTTGGATGTATCAGAGTGTTTCTTACTAGAAGGCATGCCGAAAGGGCTTCAAAAACTTGCTTCCCTCCAAGTACTAAAAGGTTTTCTGATAGGAACACTGAAGAAAACTCCCTGCCGGCTTGGTGAGCTTGTGAAGTTGAAGAATCTAAGGCGGCTAAGCATACATATGGGAAATGAGGCTGTCGTTCAAACAGGAGAGTTCACAAAGCTAGAGGGTGTATCCTCTCTTCGCCACCTGAAAATATCATGGGGAGTGCTTTCTTCAAATTTCAAGAAAGATATCGACGTGGAGTCCGAGAAATTATCGTTTCCACCCAACTTAGAAAAACTTGATCTTCAAGGCTTTCCAATACGGACGATACCAGACGGGTTGAAGCCTAGCAAACTGAAGAAGTTAAAGAAGCTCTACATAATGGGTGGGGAACTCAGTAGCTTGTCTCATGGGGAAACTAATGAGCACTGGAAAGTGGAAATCTTGCGTCTCCATTTCCTGAAAAAACTGAAATCGCCAATGTTTTTTGTTTCTGGCAAAGTGGACTTGCCAAGCTTGAAGAGAGAGTTTCCTAGTATCCAGTACTGGGCAGTTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

489

Amino Acids

55.96

Weight (kDa)

8.68

Isoelectric Point (pI)

46.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_DRP PF23559 52 - 122 1.4e-14 Disease resistance protein Winged helix domain
LRR_14 PF23598 234 - 431 7.6e-26 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 333 - 432 1.4e-06 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 677
AccBSI CCGCTC 1 cut(s) 46
AccII CGCG 1 cut(s) 462
AciI CCGC 2 cut(s) 46, 1030
AclWI GGATC 2 cut(s) 476, 489
AcoI YGGCCR 3 cut(s) 47, 384, 422
AcsI RAATTY 3 cut(s) 696, 804, 1144
AcuI CTGAAG 4 cut(s) 596, 884, 998, 1286
AfaI GTAC 4 cut(s) 346, 725, 951, 1454
AfiI CCNNNNNNNGG 4 cut(s) 56, 93, 308, 1456
AhdI GACNNNNNGTC 1 cut(s) 1168
AjiI CACGTC 1 cut(s) 1165
AjnI CCWGG 1 cut(s) 301
AluBI AGCT 9 cut(s) 277, 616, 689, 871, 1006, 1087, 1282, 1311, 1425
AluI AGCT 9 cut(s) 277, 616, 689, 871, 1006, 1087, 1282, 1311, 1425
Alw21I GWGCWC 1 cut(s) 1338
Alw26I GTCTC 2 cut(s) 1320, 1364
AlwI GGATC 2 cut(s) 476, 489
Ama87I CYCGRG 1 cut(s) 506
AoxI GGCC 4 cut(s) 47, 185, 384, 422
ApoI RAATTY 3 cut(s) 696, 804, 1144
Asp700I GAANNNNTTC 1 cut(s) 501
AspLEI GCGC 2 cut(s) 462, 464
AsuHPI GGTGA 3 cut(s) 317, 323, 1013
AsuII TTCGAA 1 cut(s) 270
AvaI CYCGRG 1 cut(s) 506
BalI TGGCCA 2 cut(s) 386, 424
BamHI GGATCC 1 cut(s) 481
BanI GGYRCC 1 cut(s) 677
BanII GRGCYC 2 cut(s) 318, 718
BarI GAAGNNNNNNTAC 2 cut(s) 1089, 1121
BbsI GAAGAC 1 cut(s) 114
Bbv12I GWGCWC 1 cut(s) 1338
BbvCI CCTCAGC 1 cut(s) 690
BccI CCATC 2 cut(s) 442, 788
BceAI ACGGC 1 cut(s) 133
BcgI CGANNNNNNTGC 2 cut(s) 152, 186
BciT130I CCWGG 1 cut(s) 303
BciVI GTATCC 2 cut(s) 1108, 1457
BcoDI GTCTC 2 cut(s) 1320, 1364
BfaI CTAG 6 cut(s) 396, 584, 905, 1088, 1257, 1443
BfuI GTATCC 2 cut(s) 1108, 1457
BglI GCCNNNNNGGC 2 cut(s) 392, 922
BisI GCNGC 2 cut(s) 47, 1031
BlpI GCTNAGC 1 cut(s) 1034
BlsI GCNGC 2 cut(s) 48, 1032
BmcAI AGTACT 2 cut(s) 951, 1454
Bme1390I CCNGG 1 cut(s) 303
BmeRI GACNNNNNGTC 1 cut(s) 1168
BmeT110I CYCGRG 1 cut(s) 506
BmgBI CACGTC 1 cut(s) 1165
BmiI GGNNCC 2 cut(s) 483, 679
BmrFI CCNGG 1 cut(s) 303
BmrI ACTGGG 1 cut(s) 1465
BmsI GCATC 1 cut(s) 420
BmuI ACTGGG 1 cut(s) 1465
BpiI GAAGAC 1 cut(s) 114
Bpu10I CCTNAGC 1 cut(s) 690
Bpu1102I GCTNAGC 1 cut(s) 1034
Bpu14I TTCGAA 1 cut(s) 270
BpuEI CTTGAG 1 cut(s) 12
BsaJI CCNNGG 4 cut(s) 356, 381, 507, 745
Bsc4I CCNNNNNNNGG 4 cut(s) 56, 93, 308, 1456
Bse118I RCCGGY 1 cut(s) 993
Bse1I ACTGG 6 cut(s) 203, 387, 485, 1343, 1450, 1460
Bse3DI GCAATG 1 cut(s) 81
BseBI CCWGG 1 cut(s) 303
BseDI CCNNGG 4 cut(s) 356, 381, 507, 745
BseGI GGATG 1 cut(s) 889
BseLI CCNNNNNNNGG 4 cut(s) 56, 93, 308, 1456
BseMI GCAATG 1 cut(s) 81
BseMII CTCAG 5 cut(s) 507, 681, 731, 806, 1318
BseNI ACTGG 6 cut(s) 203, 387, 485, 1343, 1450, 1460
BsePI GCGCGC 1 cut(s) 460
BseRI GAGGAG 3 cut(s) 56, 112, 602
Bsh1236I CGCG 1 cut(s) 462
BshFI GGCC 4 cut(s) 49, 187, 386, 424
BshNI GGYRCC 1 cut(s) 677
BsiHKAI GWGCWC 1 cut(s) 1338
BsiHKCI CYCGRG 1 cut(s) 506
BsiSI CCGG 1 cut(s) 994
BslI CCNNNNNNNGG 4 cut(s) 56, 93, 308, 1456
BsmAI GTCTC 2 cut(s) 1320, 1364
BsmBI CGTCTC 1 cut(s) 1364
BsnI GGCC 4 cut(s) 49, 187, 386, 424
BsoBI CYCGRG 1 cut(s) 506
Bsp119I TTCGAA 1 cut(s) 270
Bsp1286I GDGCHC 3 cut(s) 318, 718, 1338
Bsp143I GATC 5 cut(s) 153, 252, 481, 811, 1210
Bsp1720I GCTNAGC 1 cut(s) 1034
BspACI CCGC 2 cut(s) 46, 1030
BspANI GGCC 4 cut(s) 49, 187, 386, 424
BspCNI CTCAG 5 cut(s) 508, 682, 730, 807, 1317
BspFNI CGCG 1 cut(s) 462
BspHI TCATGA 1 cut(s) 279
BspLI GGNNCC 2 cut(s) 483, 679
BspPI GGATC 2 cut(s) 476, 489
BspT104I TTCGAA 1 cut(s) 270
BspT107I GGYRCC 1 cut(s) 677
BsrBI CCGCTC 1 cut(s) 46
BsrDI GCAATG 1 cut(s) 81
BsrFI RCCGGY 1 cut(s) 993
BsrI ACTGG 6 cut(s) 203, 387, 485, 1343, 1450, 1460
BssAI RCCGGY 1 cut(s) 993
BssECI CCNNGG 4 cut(s) 356, 381, 507, 745
BssHII GCGCGC 1 cut(s) 460
BssMI GATC 5 cut(s) 153, 252, 481, 811, 1210
BssT1I CCWWGG 2 cut(s) 356, 381
Bst2UI CCWGG 1 cut(s) 303
Bst4CI ACNGT 2 cut(s) 323, 624
Bst6I CTCTTC 6 cut(s) 176, 233, 243, 862, 1110, 1424
BstBI TTCGAA 1 cut(s) 270
BstC8I GCNNGC 4 cut(s) 140, 462, 914, 995
BstEII GGTNACC 1 cut(s) 840
BstF5I GGATG 1 cut(s) 889
BstFNI CGCG 1 cut(s) 462
BstHHI GCGC 2 cut(s) 462, 464
BstKTI GATC 5 cut(s) 156, 255, 484, 814, 1213
BstMAI GTCTC 2 cut(s) 1320, 1364
BstMBI GATC 5 cut(s) 153, 252, 481, 811, 1210
BstMWI GCNNNNNNNGC 7 cut(s) 10, 392, 430, 634, 686, 922, 1003
BstNI CCWGG 1 cut(s) 303
BstNSI RCATGY 3 cut(s) 373, 468, 916
BstPI GGTNACC 1 cut(s) 840
BstSCI CCNGG 1 cut(s) 301
BstUI CGCG 1 cut(s) 462
BstV2I GAAGAC 1 cut(s) 114
BstX2I RGATCY 1 cut(s) 481
BstYI RGATCY 1 cut(s) 481
BsuI GTATCC 2 cut(s) 1108, 1457
BsuRI GGCC 4 cut(s) 49, 187, 386, 424
BtrI CACGTC 1 cut(s) 1165
BtsCI GGATG 1 cut(s) 889
BtsIMutI CAGTG 4 cut(s) 394, 860, 974, 1336
Cac8I GCNNGC 4 cut(s) 140, 462, 914, 995
CciI TCATGA 1 cut(s) 279
CfoI GCGC 2 cut(s) 462, 464
Cfr10I RCCGGY 1 cut(s) 993
CseI GACGC 1 cut(s) 1346
CsiI ACCWGGT 1 cut(s) 301
Csp6I GTAC 4 cut(s) 345, 724, 950, 1453
CviAII CATG 6 cut(s) 280, 370, 465, 913, 1125, 1319
CviQI GTAC 4 cut(s) 345, 724, 950, 1453
DpnI GATC 5 cut(s) 155, 254, 483, 813, 1212
DpnII GATC 5 cut(s) 153, 252, 481, 811, 1210
DriI GACNNNNNGTC 1 cut(s) 1168
EaeI YGGCCR 3 cut(s) 47, 384, 422
Eam1104I CTCTTC 6 cut(s) 176, 233, 243, 862, 1110, 1424
Eam1105I GACNNNNNGTC 1 cut(s) 1168
EarI CTCTTC 6 cut(s) 176, 233, 243, 862, 1110, 1424
Eco130I CCWWGG 2 cut(s) 356, 381
Eco147I AGGCCT 1 cut(s) 187
Eco24I GRGCYC 2 cut(s) 318, 718
Eco32I GATATC 3 cut(s) 378, 853, 1159
Eco57I CTGAAG 4 cut(s) 596, 884, 998, 1286
Eco88I CYCGRG 1 cut(s) 506
Eco91I GGTNACC 1 cut(s) 840
EcoO65I GGTNACC 1 cut(s) 840
EcoRI GAATTC 1 cut(s) 696
EcoRII CCWGG 1 cut(s) 301
EcoRV GATATC 3 cut(s) 378, 853, 1159
EcoT14I CCWWGG 2 cut(s) 356, 381
EcoT38I GRGCYC 2 cut(s) 318, 718
ErhI CCWWGG 2 cut(s) 356, 381
Esp3I CGTCTC 1 cut(s) 1364
FaeI CATG 6 cut(s) 283, 373, 468, 916, 1128, 1322
FalI AAGNNNNNCTT 2 cut(s) 122, 154
FatI CATG 6 cut(s) 279, 369, 464, 912, 1124, 1318
FauNDI CATATG 1 cut(s) 1044
Fnu4HI GCNGC 2 cut(s) 47, 1031
FokI GGATG 1 cut(s) 896
FriOI GRGCYC 2 cut(s) 318, 718
Fsp4HI GCNGC 2 cut(s) 47, 1031
FspBI CTAG 6 cut(s) 396, 584, 905, 1088, 1257, 1443
GlaI GCGC 2 cut(s) 461, 463
GluI GCNGC 2 cut(s) 47, 1031
HaeIII GGCC 4 cut(s) 49, 187, 386, 424
HapII CCGG 1 cut(s) 994
HgaI GACGC 1 cut(s) 1346
HhaI GCGC 2 cut(s) 462, 464
Hin1II CATG 6 cut(s) 283, 373, 468, 916, 1128, 1322
Hin6I GCGC 2 cut(s) 460, 462
HinP1I GCGC 2 cut(s) 460, 462
HindIII AAGCTT 1 cut(s) 1423
HinfI GANTC 8 cut(s) 71, 295, 361, 413, 776, 787, 1021, 1169
HpaII CCGG 1 cut(s) 994
HphI GGTGA 3 cut(s) 317, 323, 1013
Hpy166II GTNNAC 2 cut(s) 1080, 1414
Hpy8I GTNNAC 2 cut(s) 1080, 1414
Hpy99I CGWCG 2 cut(s) 369, 1166
HpyAV CCTTC 6 cut(s) 124, 280, 302, 592, 855, 902
HpyCH4III ACNGT 2 cut(s) 323, 624
HpyCH4IV ACGT 2 cut(s) 722, 1164
HpyCH4V TGCA 1 cut(s) 352
HpyF10VI GCNNNNNNNGC 7 cut(s) 10, 392, 430, 634, 686, 922, 1003
HpySE526I ACGT 2 cut(s) 722, 1164
Hsp92II CATG 6 cut(s) 283, 373, 468, 916, 1128, 1322
HspAI GCGC 2 cut(s) 460, 462
KroI GCCGGC 1 cut(s) 993
KroNI GCCGGC 1 cut(s) 995
Kzo9I GATC 5 cut(s) 153, 252, 481, 811, 1210
LmnI GCTCC 1 cut(s) 43
LweI GCATC 1 cut(s) 420
MabI ACCWGGT 1 cut(s) 301
MaeI CTAG 6 cut(s) 396, 584, 905, 1088, 1257, 1443
MaeII ACGT 2 cut(s) 722, 1164
MaeIII GTNAC 3 cut(s) 22, 824, 840
MalI GATC 5 cut(s) 155, 254, 483, 813, 1212
MbiI CCGCTC 1 cut(s) 46
MboI GATC 5 cut(s) 153, 252, 481, 811, 1210
MflI RGATCY 1 cut(s) 481
MhlI GDGCHC 3 cut(s) 318, 718, 1338
MlsI TGGCCA 2 cut(s) 386, 424
MluCI AATT 8 cut(s) 125, 326, 501, 696, 759, 804, 1144, 1178
MluNI TGGCCA 2 cut(s) 386, 424
MlyI GAGTC 1 cut(s) 1178
MmeI TCCRAC 1 cut(s) 473
Mox20I TGGCCA 2 cut(s) 386, 424
MroNI GCCGGC 1 cut(s) 993
MroXI GAANNNNTTC 1 cut(s) 501
MscI TGGCCA 2 cut(s) 386, 424
MseI TTAA 1 cut(s) 1274
MslI CAYNNNNRTG 3 cut(s) 653, 882, 1043
Msp20I TGGCCA 2 cut(s) 386, 424
MspA1I CMGCKG 1 cut(s) 689
MspI CCGG 1 cut(s) 994
MspR9I CCNGG 1 cut(s) 303
MvaI CCWGG 1 cut(s) 303
MvnI CGCG 1 cut(s) 462
MwoI GCNNNNNNNGC 7 cut(s) 10, 392, 430, 634, 686, 922, 1003
NaeI GCCGGC 1 cut(s) 995
NdeI CATATG 1 cut(s) 1044
NdeII GATC 5 cut(s) 153, 252, 481, 811, 1210
NgoMIV GCCGGC 1 cut(s) 993
NlaIII CATG 6 cut(s) 283, 373, 468, 916, 1128, 1322
NlaIV GGNNCC 2 cut(s) 483, 679
NmuCI GTSAC 1 cut(s) 824
NspI RCATGY 3 cut(s) 373, 468, 916
NspV TTCGAA 1 cut(s) 270
PaeI GCATGC 1 cut(s) 916
PagI TCATGA 1 cut(s) 279
PauI GCGCGC 1 cut(s) 460
PceI AGGCCT 1 cut(s) 187
PcsI WCGNNNNNNNCGW 2 cut(s) 807, 1170
PdiI GCCGGC 1 cut(s) 995
PdmI GAANNNNTTC 1 cut(s) 501
PfeI GAWTC 7 cut(s) 71, 295, 361, 413, 776, 787, 1021
PkrI GCNGC 2 cut(s) 48, 1032
PleI GAGTC 1 cut(s) 1177
PpsI GAGTC 1 cut(s) 1177
Psp6I CCWGG 1 cut(s) 301
PspEI GGTNACC 1 cut(s) 840
PspGI CCWGG 1 cut(s) 301
PspN4I GGNNCC 2 cut(s) 483, 679
PsuI RGATCY 1 cut(s) 481
PteI GCGCGC 1 cut(s) 460
PvuII CAGCTG 1 cut(s) 689
RsaI GTAC 4 cut(s) 346, 725, 951, 1454
RsaNI GTAC 4 cut(s) 345, 724, 950, 1453
RseI CAYNNNNRTG 3 cut(s) 653, 882, 1043
SaqAI TTAA 1 cut(s) 1274
SatI GCNGC 2 cut(s) 47, 1031
Sau3AI GATC 5 cut(s) 153, 252, 481, 811, 1210
ScaI AGTACT 2 cut(s) 951, 1454
SchI GAGTC 1 cut(s) 1178
ScrFI CCNGG 1 cut(s) 303
SduI GDGCHC 3 cut(s) 318, 718, 1338
SexAI ACCWGGT 1 cut(s) 301
SfaNI GCATC 1 cut(s) 420
SfuI TTCGAA 1 cut(s) 270
SmiMI CAYNNNNRTG 3 cut(s) 653, 882, 1043
SmlI CTYRAG 1 cut(s) 27
SmoI CTYRAG 1 cut(s) 27
SphI GCATGC 1 cut(s) 916
Sse9I AATT 8 cut(s) 125, 326, 501, 696, 759, 804, 1144, 1178
SseBI AGGCCT 1 cut(s) 187
SsiI CCGC 2 cut(s) 46, 1030
SspMI CTAG 6 cut(s) 396, 584, 905, 1088, 1257, 1443
StuI AGGCCT 1 cut(s) 187
StyD4I CCNGG 1 cut(s) 301
StyI CCWWGG 2 cut(s) 356, 381
TaaI ACNGT 2 cut(s) 323, 624
TaiI ACGT 2 cut(s) 725, 1167
TaqI TCGA 7 cut(s) 152, 270, 664, 755, 801, 810, 1161
TasI AATT 8 cut(s) 125, 326, 501, 696, 759, 804, 1144, 1178
TatI WGTACW 3 cut(s) 344, 949, 1452
TauI GCSGC 2 cut(s) 49, 1033
TfiI GAWTC 7 cut(s) 71, 295, 361, 413, 776, 787, 1021
Tru1I TTAA 1 cut(s) 1274
Tru9I TTAA 1 cut(s) 1274
TscAI CASTG 4 cut(s) 394, 867, 981, 1343
TseFI GTSAC 1 cut(s) 824
Tsp45I GTSAC 1 cut(s) 824
TspDTI ATGAA 3 cut(s) 120, 208, 1455
TspGWI ACGGA 2 cut(s) 137, 1246
TspRI CASTG 4 cut(s) 394, 867, 981, 1343
XapI RAATTY 3 cut(s) 696, 804, 1144
XceI RCATGY 3 cut(s) 373, 468, 916
XmnI GAANNNNTTC 1 cut(s) 501
XspI CTAG 6 cut(s) 396, 584, 905, 1088, 1257, 1443
ZrmI AGTACT 2 cut(s) 951, 1454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.