Rh2BG239000

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000917
Physical Location & Seq
Forward (+)
23800505 .. 23801551
1047 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG239000.1

Sequence Viewer

Length: 1047 bp
ATGAGGAAGGACTTGATTCAACCAGGTGAAGGTGAGCCCAACTGTGAATTGTTTGTCAAAAGTTGTACTATGCACCCTTGGATTCGTCGCATGTTGATATCCTTGGCTAGTGAGGCTAGGCTATTCCACTTTGATTCAATATGGCCAATGATGCCATCTTATTACATTCCAACTTGTAGGCGCGCATGTTTAGTTTCTAAGGATCCAGTAAAAGTTGAACCAATTCCCGAGGGTGCTGAGTTGAATACTCTATTGACATTATTCAATGTAAATGTTCAATATCTTGATTTGGAACAAAAACGACTAGAGGAGTTGAAGAAGGTTGAGGTTCTTCAGCTTGGACGGTGGCAGAACTCGCCTACACATCACATTGAAGTGGAACATCGAAGATTTGTTGGTGCCTCATCAGCTGAGAGGTTACCTTCGGATATCTCTTCACTGAAGAAGCTCACACATTTGGATGTATCAGAGTGTTTCTTACTAGAAGGCATGCCGAAAGGGCTTCAAAAACTTGCTTCCCTCCAAGTACTAAAAGGTTTTCTGATAGGAACACTGAAGAAAACTCCCTGCCGGCTTGGTGAGCTTGTGAAGTTGAAGACTCTAAGGCGGCTAAGCATACACATGGGAAATGAGGCTGTCGTTCAAACAGGAGAGTTCACAAAGCTAGAGGGTGTATCCTCTCTTCGCCACCTGAAAATATCATGGGGAGTGCTTTCTTCAAATTTCAAGAAAGATATCGACGAGGAGTCCGAGAAATTATCGTTTCCACCCAACTTAGAACAACTTGATCTTCAAGGCTTTCCAATACGGACGATACCAGACGGGTTGAAGCCTAGCAAACTGAAGAAGTTAAAGAAGCTCTACATAATGGGTGGGGAACTCAGTAGCTTGTCTCATGGGGAAACTAATGAGCACTGGAAAGTGGAAATCTTGCGTCTCCATTTCCTGAAAAAACTGAAATCGCCAATGTTTTTTGTTTCTGGCAAAGTGGACTTGCCAAGCTTGAAGAGAGAGTTTCCTAGTATCCAGTACTGGGCAGTTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

348

Amino Acids

39.79

Weight (kDa)

9.28

Isoelectric Point (pI)

43.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 136 - 290 2.9e-15 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 192 - 291 4.5e-06 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 398
AccII CGCG 1 cut(s) 183
AciI CCGC 1 cut(s) 607
AclWI GGATC 2 cut(s) 197, 210
AcoI YGGCCR 1 cut(s) 143
AcsI RAATTY 1 cut(s) 721
AcuI CTGAAG 4 cut(s) 317, 461, 575, 863
AfaI GTAC 3 cut(s) 67, 528, 1031
AfiI CCNNNNNNNGG 2 cut(s) 29, 1033
AhdI GACNNNNNGTC 1 cut(s) 745
AjnI CCWGG 1 cut(s) 22
AluBI AGCT 8 cut(s) 337, 410, 448, 583, 664, 859, 888, 1002
AluI AGCT 8 cut(s) 337, 410, 448, 583, 664, 859, 888, 1002
Alw21I GWGCWC 1 cut(s) 915
Alw26I GTCTC 2 cut(s) 897, 941
AlwI GGATC 2 cut(s) 197, 210
Ama87I CYCGRG 1 cut(s) 227
AoxI GGCC 1 cut(s) 143
ApoI RAATTY 1 cut(s) 721
Asp700I GAANNNNTTC 1 cut(s) 222
AspLEI GCGC 2 cut(s) 183, 185
AsuHPI GGTGA 3 cut(s) 38, 44, 590
AvaI CYCGRG 1 cut(s) 227
BalI TGGCCA 1 cut(s) 145
BamHI GGATCC 1 cut(s) 202
BanI GGYRCC 1 cut(s) 398
BanII GRGCYC 1 cut(s) 39
BarI GAAGNNNNNNTAC 2 cut(s) 666, 698
BbsI GAAGAC 1 cut(s) 602
Bbv12I GWGCWC 1 cut(s) 915
BccI CCATC 1 cut(s) 163
BciT130I CCWGG 1 cut(s) 24
BciVI GTATCC 2 cut(s) 685, 1034
BcoDI GTCTC 2 cut(s) 897, 941
BfaI CTAG 7 cut(s) 108, 117, 305, 482, 665, 834, 1020
BfuI GTATCC 2 cut(s) 685, 1034
BglI GCCNNNNNGGC 1 cut(s) 499
BisI GCNGC 1 cut(s) 608
BlpI GCTNAGC 1 cut(s) 611
BlsI GCNGC 1 cut(s) 609
BmcAI AGTACT 2 cut(s) 528, 1031
Bme1390I CCNGG 1 cut(s) 24
BmeRI GACNNNNNGTC 1 cut(s) 745
BmeT110I CYCGRG 1 cut(s) 227
BmiI GGNNCC 2 cut(s) 204, 400
BmrFI CCNGG 1 cut(s) 24
BmrI ACTGGG 1 cut(s) 1042
BmsI GCATC 1 cut(s) 141
BmuI ACTGGG 1 cut(s) 1042
BpiI GAAGAC 1 cut(s) 602
Bpu1102I GCTNAGC 1 cut(s) 611
BsaJI CCNNGG 3 cut(s) 77, 102, 228
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 1033
Bse118I RCCGGY 1 cut(s) 570
Bse1I ACTGG 4 cut(s) 206, 920, 1027, 1037
BseBI CCWGG 1 cut(s) 24
BseDI CCNNGG 3 cut(s) 77, 102, 228
BseGI GGATG 1 cut(s) 466
BseLI CCNNNNNNNGG 2 cut(s) 29, 1033
BseMII CTCAG 3 cut(s) 228, 402, 895
BseNI ACTGG 4 cut(s) 206, 920, 1027, 1037
BsePI GCGCGC 1 cut(s) 181
BseRI GAGGAG 2 cut(s) 323, 758
Bsh1236I CGCG 1 cut(s) 183
BshFI GGCC 1 cut(s) 145
BshNI GGYRCC 1 cut(s) 398
BsiHKAI GWGCWC 1 cut(s) 915
BsiHKCI CYCGRG 1 cut(s) 227
BsiSI CCGG 1 cut(s) 571
BslI CCNNNNNNNGG 2 cut(s) 29, 1033
BsmAI GTCTC 2 cut(s) 897, 941
BsmBI CGTCTC 1 cut(s) 941
BsnI GGCC 1 cut(s) 145
BsoBI CYCGRG 1 cut(s) 227
Bsp1286I GDGCHC 2 cut(s) 39, 915
Bsp143I GATC 2 cut(s) 202, 787
Bsp1720I GCTNAGC 1 cut(s) 611
BspACI CCGC 1 cut(s) 607
BspANI GGCC 1 cut(s) 145
BspCNI CTCAG 3 cut(s) 229, 403, 894
BspFNI CGCG 1 cut(s) 183
BspLI GGNNCC 2 cut(s) 204, 400
BspPI GGATC 2 cut(s) 197, 210
BspT107I GGYRCC 1 cut(s) 398
BsrFI RCCGGY 1 cut(s) 570
BsrI ACTGG 4 cut(s) 206, 920, 1027, 1037
BssAI RCCGGY 1 cut(s) 570
BssECI CCNNGG 3 cut(s) 77, 102, 228
BssHII GCGCGC 1 cut(s) 181
BssMI GATC 2 cut(s) 202, 787
BssT1I CCWWGG 2 cut(s) 77, 102
Bst2UI CCWGG 1 cut(s) 24
Bst4CI ACNGT 2 cut(s) 44, 345
Bst6I CTCTTC 3 cut(s) 439, 687, 1001
BstC8I GCNNGC 3 cut(s) 183, 491, 572
BstDEI CTNAG 7 cut(s) 198, 237, 411, 602, 611, 775, 881
BstEII GGTNACC 1 cut(s) 417
BstF5I GGATG 1 cut(s) 466
BstFNI CGCG 1 cut(s) 183
BstHHI GCGC 2 cut(s) 183, 185
BstKTI GATC 2 cut(s) 205, 790
BstMAI GTCTC 2 cut(s) 897, 941
BstMBI GATC 2 cut(s) 202, 787
BstMWI GCNNNNNNNGC 6 cut(s) 113, 151, 355, 407, 499, 580
BstNI CCWGG 1 cut(s) 24
BstNSI RCATGY 3 cut(s) 94, 189, 493
BstPI GGTNACC 1 cut(s) 417
BstSCI CCNGG 1 cut(s) 22
BstUI CGCG 1 cut(s) 183
BstV2I GAAGAC 1 cut(s) 602
BstX2I RGATCY 1 cut(s) 202
BstYI RGATCY 1 cut(s) 202
BsuI GTATCC 2 cut(s) 685, 1034
BsuRI GGCC 1 cut(s) 145
BtsCI GGATG 1 cut(s) 466
BtsIMutI CAGTG 3 cut(s) 437, 551, 913
Cac8I GCNNGC 3 cut(s) 183, 491, 572
CfoI GCGC 2 cut(s) 183, 185
Cfr10I RCCGGY 1 cut(s) 570
CseI GACGC 1 cut(s) 923
CsiI ACCWGGT 1 cut(s) 22
Csp6I GTAC 3 cut(s) 66, 527, 1030
CviAII CATG 6 cut(s) 91, 186, 490, 622, 702, 896
CviQI GTAC 3 cut(s) 66, 527, 1030
DdeI CTNAG 7 cut(s) 198, 237, 411, 602, 611, 775, 881
DpnI GATC 2 cut(s) 204, 789
DpnII GATC 2 cut(s) 202, 787
DriI GACNNNNNGTC 1 cut(s) 745
EaeI YGGCCR 1 cut(s) 143
Eam1104I CTCTTC 3 cut(s) 439, 687, 1001
Eam1105I GACNNNNNGTC 1 cut(s) 745
EarI CTCTTC 3 cut(s) 439, 687, 1001
Eco130I CCWWGG 2 cut(s) 77, 102
Eco24I GRGCYC 1 cut(s) 39
Eco32I GATATC 3 cut(s) 99, 430, 736
Eco57I CTGAAG 4 cut(s) 317, 461, 575, 863
Eco88I CYCGRG 1 cut(s) 227
Eco91I GGTNACC 1 cut(s) 417
EcoO65I GGTNACC 1 cut(s) 417
EcoRII CCWGG 1 cut(s) 22
EcoRV GATATC 3 cut(s) 99, 430, 736
EcoT14I CCWWGG 2 cut(s) 77, 102
EcoT38I GRGCYC 1 cut(s) 39
ErhI CCWWGG 2 cut(s) 77, 102
Esp3I CGTCTC 1 cut(s) 941
FaeI CATG 6 cut(s) 94, 189, 493, 625, 705, 899
FatI CATG 6 cut(s) 90, 185, 489, 621, 701, 895
Fnu4HI GCNGC 1 cut(s) 608
FokI GGATG 1 cut(s) 473
FriOI GRGCYC 1 cut(s) 39
Fsp4HI GCNGC 1 cut(s) 608
FspBI CTAG 7 cut(s) 108, 117, 305, 482, 665, 834, 1020
GlaI GCGC 2 cut(s) 182, 184
GluI GCNGC 1 cut(s) 608
HaeIII GGCC 1 cut(s) 145
HapII CCGG 1 cut(s) 571
HgaI GACGC 1 cut(s) 923
HhaI GCGC 2 cut(s) 183, 185
Hin1II CATG 6 cut(s) 94, 189, 493, 625, 705, 899
Hin6I GCGC 2 cut(s) 181, 183
HinP1I GCGC 2 cut(s) 181, 183
HindIII AAGCTT 1 cut(s) 1000
HinfI GANTC 5 cut(s) 16, 82, 134, 598, 746
HpaII CCGG 1 cut(s) 571
HphI GGTGA 3 cut(s) 38, 44, 590
Hpy166II GTNNAC 2 cut(s) 657, 991
Hpy188I TCNGA 4 cut(s) 427, 469, 543, 751
Hpy188III TCNNGA 4 cut(s) 227, 284, 727, 946
Hpy8I GTNNAC 2 cut(s) 657, 991
Hpy99I CGWCG 2 cut(s) 90, 743
HpyAV CCTTC 4 cut(s) 23, 313, 432, 479
HpyCH4III ACNGT 2 cut(s) 44, 345
HpyCH4V TGCA 1 cut(s) 73
HpyF10VI GCNNNNNNNGC 6 cut(s) 113, 151, 355, 407, 499, 580
HpyF3I CTNAG 7 cut(s) 198, 237, 411, 602, 611, 775, 881
Hsp92II CATG 6 cut(s) 94, 189, 493, 625, 705, 899
HspAI GCGC 2 cut(s) 181, 183
KroI GCCGGC 1 cut(s) 570
KroNI GCCGGC 1 cut(s) 572
Kzo9I GATC 2 cut(s) 202, 787
LweI GCATC 1 cut(s) 141
MabI ACCWGGT 1 cut(s) 22
MaeI CTAG 7 cut(s) 108, 117, 305, 482, 665, 834, 1020
MaeIII GTNAC 1 cut(s) 417
MalI GATC 2 cut(s) 204, 789
MboI GATC 2 cut(s) 202, 787
MflI RGATCY 1 cut(s) 202
MhlI GDGCHC 2 cut(s) 39, 915
MlsI TGGCCA 1 cut(s) 145
MluCI AATT 4 cut(s) 47, 222, 721, 755
MluNI TGGCCA 1 cut(s) 145
MlyI GAGTC 2 cut(s) 592, 755
MmeI TCCRAC 1 cut(s) 194
Mox20I TGGCCA 1 cut(s) 145
MroNI GCCGGC 1 cut(s) 570
MroXI GAANNNNTTC 1 cut(s) 222
MscI TGGCCA 1 cut(s) 145
MseI TTAA 1 cut(s) 851
MslI CAYNNNNRTG 3 cut(s) 374, 459, 620
Msp20I TGGCCA 1 cut(s) 145
MspA1I CMGCKG 1 cut(s) 410
MspI CCGG 1 cut(s) 571
MspR9I CCNGG 1 cut(s) 24
MvaI CCWGG 1 cut(s) 24
MvnI CGCG 1 cut(s) 183
MwoI GCNNNNNNNGC 6 cut(s) 113, 151, 355, 407, 499, 580
NaeI GCCGGC 1 cut(s) 572
NdeII GATC 2 cut(s) 202, 787
NgoMIV GCCGGC 1 cut(s) 570
NlaIII CATG 6 cut(s) 94, 189, 493, 625, 705, 899
NlaIV GGNNCC 2 cut(s) 204, 400
NspI RCATGY 3 cut(s) 94, 189, 493
PaeI GCATGC 1 cut(s) 493
PauI GCGCGC 1 cut(s) 181
PcsI WCGNNNNNNNCGW 1 cut(s) 747
PdiI GCCGGC 1 cut(s) 572
PdmI GAANNNNTTC 1 cut(s) 222
PfeI GAWTC 3 cut(s) 16, 82, 134
PkrI GCNGC 1 cut(s) 609
PleI GAGTC 2 cut(s) 592, 754
PpsI GAGTC 2 cut(s) 592, 754
Psp6I CCWGG 1 cut(s) 22
PspEI GGTNACC 1 cut(s) 417
PspGI CCWGG 1 cut(s) 22
PspN4I GGNNCC 2 cut(s) 204, 400
PsuI RGATCY 1 cut(s) 202
PteI GCGCGC 1 cut(s) 181
PvuII CAGCTG 1 cut(s) 410
RsaI GTAC 3 cut(s) 67, 528, 1031
RsaNI GTAC 3 cut(s) 66, 527, 1030
RseI CAYNNNNRTG 3 cut(s) 374, 459, 620
SaqAI TTAA 1 cut(s) 851
SatI GCNGC 1 cut(s) 608
Sau3AI GATC 2 cut(s) 202, 787
ScaI AGTACT 2 cut(s) 528, 1031
SchI GAGTC 2 cut(s) 592, 755
ScrFI CCNGG 1 cut(s) 24
SduI GDGCHC 2 cut(s) 39, 915
SexAI ACCWGGT 1 cut(s) 22
SfaNI GCATC 1 cut(s) 141
SmiMI CAYNNNNRTG 3 cut(s) 374, 459, 620
SphI GCATGC 1 cut(s) 493
Sse9I AATT 4 cut(s) 47, 222, 721, 755
SsiI CCGC 1 cut(s) 607
SspMI CTAG 7 cut(s) 108, 117, 305, 482, 665, 834, 1020
StyD4I CCNGG 1 cut(s) 22
StyI CCWWGG 2 cut(s) 77, 102
TaaI ACNGT 2 cut(s) 44, 345
TaqI TCGA 2 cut(s) 385, 738
TasI AATT 4 cut(s) 47, 222, 721, 755
TatI WGTACW 3 cut(s) 65, 526, 1029
TauI GCSGC 1 cut(s) 610
TfiI GAWTC 3 cut(s) 16, 82, 134
Tru1I TTAA 1 cut(s) 851
Tru9I TTAA 1 cut(s) 851
TscAI CASTG 3 cut(s) 444, 558, 920
TspDTI ATGAA 1 cut(s) 1032
TspGWI ACGGA 1 cut(s) 823
TspRI CASTG 3 cut(s) 444, 558, 920
XapI RAATTY 1 cut(s) 721
XceI RCATGY 3 cut(s) 94, 189, 493
XmnI GAANNNNTTC 1 cut(s) 222
XspI CTAG 7 cut(s) 108, 117, 305, 482, 665, 834, 1020
ZrmI AGTACT 2 cut(s) 528, 1031
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.