Rh2CG241400

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000917
Physical Location & Seq
Forward (+)
25120851 .. 25122344
1494 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG241400.1

Sequence Viewer

Length: 1494 bp
ATGGCAAATTCCGAGGTGGCGTTGGGTCTCGAGGTGGAGTTGGCTGATCGACCTGAGGAAATATCACAAGATCAGCGGAAACTGAGCGCGGAGGCAATTTTCGATAAAAGTGAGGCCATGGCCAACATAAGGAGGAGTTATGGAGATCTTCGGGGCACGGAATTGAAGGTCTGTCTACTTTCTTTCTCAATCTTCCCTGAGGGTTCTGAGATAAGAAAGAGGCCTCTAATTTACTGGTGGATCGGCGAGGGCTTCATCACGGCTACCAAAGAGAAGACAGCAGAGGAGATAGGAGAAGACATCTTTGCAAAACTCTTGAGAAAGGACTTGATTCAACCAGCTCCAGGTGAGTCCAACTGTGAATTACTTGTCAAAAATTGTTGTGTTCACCCTTGGATTCGTCGTATGTTGATCTCCTTGGCTAGAGAGGCTAGGCTGTTCGACTTCGATCCCAGATGGCCAATGATGCCATCTGATTCTATATGGACTTGTAGGCGTTCATGTTTAGTTTCTAAGGAGGATAAGTCAATAACTCCTCAGGGTGATGATCAATGGAAACAAAATCTATTGACAGTATTCAATGTAAACGTTCAATATCTTGATTTGAAACAAGAATGGCTCGACAAGTTGAAGAGGGTTGAAGTTCTTCACTTTGGACGGTGGCAGAGCTCCCCCAAATATCACATTGAGGTGGATCAGAAAACATTTGATGGTTCACAAGCTGTATCGTTTCTAAATGGTTTGGGAGCTCAGAAGCACTTGAAGTATCTTAGCCTCAGAGGAATATCAAGAATTAGCGAACTTCCTGCTTCTATTCGTAGTCTTATCAGCCTTGAAATTCTTGATCTGAGAGCATGCCATGACTTGGAGAGGTTGCCTTCAGACATCTCATCATTGAAGAAGCTCACGCATTTGGATGTATCAGAGTGTTACTTACTAGAAGGCGTGCCCAAAGGGCTTCACAAACTTTCTTCCTTGCAAGTACTTAAAGGTTTTCTGATAGGATCACAGGAAAAAACTCCCACCAAACTTGGTGAACTTGCGACATTGAAGAAGCTAAGGAGGCTTAGCATACACATTGGGAATGGGGCTGCAATTCAAGCAGGGGAGTTTGAAAAGTTGAAAGTTATGTCATCTCTTCGCTACCTGAAAGTATCATGGGGAGTGGTTTCTAAAAATTTGACAGAGGGTATTGAAGATGAGCCCTCGAAATTCTTGTTTCCAGAGAATTTAGAAAAATTGGATCTTCAAGGGTTTCCCCTGTCAGATGCACCAGAAGGGTTGAAGCCTAGCAAACTGAAAAATTTAAAGAAGCTCTATATAAGGGGTGGGGAACTTAAGAGCTTGGTTCATGGGGAAAATGAGCAGTGGAAAGTGGAAATCTTCCGTCTCGAGTACTTGAAGAAGTTCATATACTCAGAAGAAGAAGTGAAGAGAATTTTTCCTCATCGGAAGTACTGGACAGTGAAGAACCTCAGTGAAGCTGAAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

497

Amino Acids

56.91

Weight (kDa)

8.55

Isoelectric Point (pI)

51.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_DRP PF23559 64 - 134 2.3e-14 Disease resistance protein Winged helix domain
LRR_R13L1-DRL21 PF25019 201 - 310 1e-05 R13L1/DRL21 LRRs
LRR_14 PF23598 245 - 443 1.9e-28 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 865
AccI GTMKAC 1 cut(s) 175
AccII CGCG 1 cut(s) 89
AciI CCGC 2 cut(s) 76, 89
AclI AACGTT 1 cut(s) 588
AclWI GGATC 5 cut(s) 248, 443, 702, 1012, 1251
AcoI YGGCCR 2 cut(s) 120, 458
AcsI RAATTY 7 cut(s) 7, 837, 1177, 1211, 1228, 1303, 1437
AcuI CTGAAG 1 cut(s) 864
AfaI GTAC 3 cut(s) 984, 1397, 1457
AfiI CCNNNNNNNGG 3 cut(s) 129, 344, 865
AflII CTTAAG 1 cut(s) 1337
AjnI CCWGG 1 cut(s) 343
AluBI AGCT 9 cut(s) 341, 669, 722, 749, 904, 1057, 1315, 1344, 1484
AluI AGCT 9 cut(s) 341, 669, 722, 749, 904, 1057, 1315, 1344, 1484
Alw21I GWGCWC 2 cut(s) 671, 751
Alw26I GTCTC 2 cut(s) 32, 1394
AlwI GGATC 5 cut(s) 248, 443, 702, 1012, 1251
Ama87I CYCGRG 2 cut(s) 29, 1391
AoxI GGCC 4 cut(s) 114, 120, 221, 458
ApeKI GCWGC 1 cut(s) 1091
ApoI RAATTY 7 cut(s) 7, 837, 1177, 1211, 1228, 1303, 1437
Asp700I GAANNNNTTC 2 cut(s) 645, 1406
AspLEI GCGC 1 cut(s) 89
AsuHPI GGTGA 4 cut(s) 359, 380, 554, 1046
AvaI CYCGRG 2 cut(s) 29, 1391
AxyI CCTNAGG 3 cut(s) 54, 198, 537
BaeGI GKGCMC 2 cut(s) 158, 951
BalI TGGCCA 2 cut(s) 122, 460
BanII GRGCYC 3 cut(s) 671, 751, 1206
BarI GAAGNNNNNNTAC 2 cut(s) 1397, 1429
BbsI GAAGAC 2 cut(s) 281, 303
Bbv12I GWGCWC 2 cut(s) 671, 751
BbvI GCAGC 1 cut(s) 1078
BccI CCATC 3 cut(s) 450, 478, 704
BceAI ACGGC 1 cut(s) 276
BcgI CGANNNNNNTGC 2 cut(s) 788, 822
BciT130I CCWGG 1 cut(s) 345
BclI TGATCA 1 cut(s) 547
BcoDI GTCTC 2 cut(s) 32, 1394
BfaI CTAG 5 cut(s) 423, 432, 938, 1290, 1492
BfrI CTTAAG 1 cut(s) 1337
BglI GCCNNNNNGGC 1 cut(s) 955
BglII AGATCT 1 cut(s) 145
BisI GCNGC 1 cut(s) 1092
BlpI GCTNAGC 1 cut(s) 1067
BlsI GCNGC 1 cut(s) 1093
BmcAI AGTACT 3 cut(s) 984, 1397, 1457
Bme1390I CCNGG 1 cut(s) 345
BmeT110I CYCGRG 2 cut(s) 29, 1391
BmrFI CCNGG 1 cut(s) 345
BmsI GCATC 2 cut(s) 456, 1258
BpiI GAAGAC 2 cut(s) 281, 303
BpmI CTGGAG 1 cut(s) 327
Bpu10I CCTNAGC 1 cut(s) 1058
Bpu1102I GCTNAGC 1 cut(s) 1067
BpuEI CTTGAG 1 cut(s) 337
BsaI GGTCTC 1 cut(s) 32
BsaJI CCNNGG 4 cut(s) 12, 117, 392, 417
BsaXI ACNNNNNCTCC 2 cut(s) 509, 539
Bsc4I CCNNNNNNNGG 3 cut(s) 129, 344, 865
Bse1I ACTGG 2 cut(s) 239, 1463
Bse21I CCTNAGG 3 cut(s) 54, 198, 537
BseBI CCWGG 1 cut(s) 345
BseDI CCNNGG 4 cut(s) 12, 117, 392, 417
BseGI GGATG 1 cut(s) 922
BseLI CCNNNNNNNGG 3 cut(s) 129, 344, 865
BseNI ACTGG 2 cut(s) 239, 1463
BseRI GAGGAG 3 cut(s) 148, 299, 525
BseSI GKGCMC 2 cut(s) 158, 951
BseXI GCAGC 1 cut(s) 1078
Bsh1236I CGCG 1 cut(s) 89
BshFI GGCC 4 cut(s) 116, 122, 223, 460
BsiHKAI GWGCWC 2 cut(s) 671, 751
BsiHKCI CYCGRG 2 cut(s) 29, 1391
BslI CCNNNNNNNGG 3 cut(s) 129, 344, 865
BsmAI GTCTC 2 cut(s) 32, 1394
BsmBI CGTCTC 1 cut(s) 1394
BsnI GGCC 4 cut(s) 116, 122, 223, 460
Bso31I GGTCTC 1 cut(s) 32
BsoBI CYCGRG 2 cut(s) 29, 1391
Bsp1286I GDGCHC 5 cut(s) 158, 671, 751, 951, 1206
Bsp1720I GCTNAGC 1 cut(s) 1067
Bsp19I CCATGG 1 cut(s) 117
BspACI CCGC 2 cut(s) 76, 89
BspANI GGCC 4 cut(s) 116, 122, 223, 460
BspFNI CGCG 1 cut(s) 89
BspPI GGATC 5 cut(s) 248, 443, 702, 1012, 1251
BspTI CTTAAG 1 cut(s) 1337
BspTNI GGTCTC 1 cut(s) 32
BsrI ACTGG 2 cut(s) 239, 1463
BssECI CCNNGG 4 cut(s) 12, 117, 392, 417
BssT1I CCWWGG 3 cut(s) 117, 392, 417
Bst2UI CCWGG 1 cut(s) 345
Bst4CI ACNGT 4 cut(s) 359, 574, 660, 1465
Bst6I CTCTTC 3 cut(s) 626, 1143, 1427
BstAFI CTTAAG 1 cut(s) 1337
BstC8I GCNNGC 2 cut(s) 856, 947
BstDSI CCRYGG 1 cut(s) 117
BstF5I GGATG 1 cut(s) 922
BstFNI CGCG 1 cut(s) 89
BstHHI GCGC 1 cut(s) 89
BstMAI GTCTC 2 cut(s) 32, 1394
BstMWI GCNNNNNNNGC 5 cut(s) 428, 466, 955, 1063, 1100
BstNI CCWGG 1 cut(s) 345
BstNSI RCATGY 1 cut(s) 858
BstSCI CCNGG 1 cut(s) 343
BstSLI GKGCMC 2 cut(s) 158, 951
BstUI CGCG 1 cut(s) 89
BstV1I GCAGC 1 cut(s) 1078
BstV2I GAAGAC 2 cut(s) 281, 303
BstX2I RGATCY 2 cut(s) 145, 1243
BstYI RGATCY 2 cut(s) 145, 1243
Bsu36I CCTNAGG 3 cut(s) 54, 198, 537
BsuRI GGCC 4 cut(s) 116, 122, 223, 460
BtgI CCRYGG 1 cut(s) 117
BtsCI GGATG 1 cut(s) 922
BtsI GCAGTG 1 cut(s) 1373
BtsIMutI CAGTG 3 cut(s) 1373, 1470, 1483
Cac8I GCNNGC 2 cut(s) 856, 947
CfoI GCGC 1 cut(s) 89
Csp6I GTAC 3 cut(s) 983, 1396, 1456
CspCI CAANNNNNGTGG 2 cut(s) 1012, 1047
CviAII CATG 6 cut(s) 118, 501, 855, 860, 1158, 1352
CviQI GTAC 3 cut(s) 983, 1396, 1456
DraI TTTAAA 1 cut(s) 1308
EaeI YGGCCR 2 cut(s) 120, 458
Eam1104I CTCTTC 3 cut(s) 626, 1143, 1427
EarI CTCTTC 3 cut(s) 626, 1143, 1427
Ecl136II GAGCTC 2 cut(s) 669, 749
Eco130I CCWWGG 3 cut(s) 117, 392, 417
Eco147I AGGCCT 1 cut(s) 223
Eco24I GRGCYC 3 cut(s) 671, 751, 1206
Eco31I GGTCTC 1 cut(s) 32
Eco53kI GAGCTC 2 cut(s) 669, 749
Eco57I CTGAAG 1 cut(s) 864
Eco81I CCTNAGG 3 cut(s) 54, 198, 537
Eco88I CYCGRG 2 cut(s) 29, 1391
EcoICRI GAGCTC 2 cut(s) 669, 749
EcoRII CCWGG 1 cut(s) 343
EcoT14I CCWWGG 3 cut(s) 117, 392, 417
EcoT38I GRGCYC 3 cut(s) 671, 751, 1206
ErhI CCWWGG 3 cut(s) 117, 392, 417
Esp3I CGTCTC 1 cut(s) 1394
FaeI CATG 6 cut(s) 121, 504, 858, 863, 1161, 1355
FatI CATG 6 cut(s) 117, 500, 854, 859, 1157, 1351
FbaI TGATCA 1 cut(s) 547
FblI GTMKAC 1 cut(s) 175
Fnu4HI GCNGC 1 cut(s) 1092
FokI GGATG 1 cut(s) 929
FriOI GRGCYC 3 cut(s) 671, 751, 1206
Fsp4HI GCNGC 1 cut(s) 1092
FspBI CTAG 5 cut(s) 423, 432, 938, 1290, 1492
GlaI GCGC 1 cut(s) 88
GluI GCNGC 1 cut(s) 1092
GsuI CTGGAG 1 cut(s) 327
HaeIII GGCC 4 cut(s) 116, 122, 223, 460
HhaI GCGC 1 cut(s) 89
Hin1II CATG 6 cut(s) 121, 504, 858, 863, 1161, 1355
Hin6I GCGC 1 cut(s) 87
HinP1I GCGC 1 cut(s) 87
HinfI GANTC 4 cut(s) 331, 350, 397, 476
HphI GGTGA 4 cut(s) 359, 380, 554, 1046
Hpy166II GTNNAC 5 cut(s) 176, 388, 586, 716, 1037
Hpy188III TCNNGA 7 cut(s) 29, 316, 599, 789, 842, 1223, 1391
Hpy8I GTNNAC 5 cut(s) 176, 388, 586, 716, 1037
Hpy99I CGWCG 1 cut(s) 405
HpyAV CCTTC 5 cut(s) 160, 888, 935, 1271, 1481
HpyCH4III ACNGT 4 cut(s) 359, 574, 660, 1465
HpyCH4IV ACGT 1 cut(s) 588
HpyCH4V TGCA 4 cut(s) 308, 979, 1094, 1271
HpyF10VI GCNNNNNNNGC 5 cut(s) 428, 466, 955, 1063, 1100
HpySE526I ACGT 1 cut(s) 588
Hsp92II CATG 6 cut(s) 121, 504, 858, 863, 1161, 1355
HspAI GCGC 1 cut(s) 87
Ksp22I TGATCA 1 cut(s) 547
LmnI GCTCC 3 cut(s) 346, 674, 746
Lsp1109I GCAGC 1 cut(s) 1078
LweI GCATC 2 cut(s) 456, 1258
MaeI CTAG 5 cut(s) 423, 432, 938, 1290, 1492
MaeII ACGT 1 cut(s) 588
MaeIII GTNAC 1 cut(s) 929
MflI RGATCY 2 cut(s) 145, 1243
MhlI GDGCHC 5 cut(s) 158, 671, 751, 951, 1206
MlsI TGGCCA 2 cut(s) 122, 460
MluNI TGGCCA 2 cut(s) 122, 460
MlyI GAGTC 1 cut(s) 359
MmeI TCCRAC 1 cut(s) 378
Mox20I TGGCCA 2 cut(s) 122, 460
MroXI GAANNNNTTC 2 cut(s) 645, 1406
MscI TGGCCA 2 cut(s) 122, 460
MseI TTAA 3 cut(s) 987, 1307, 1338
MslI CAYNNNNRTG 2 cut(s) 689, 915
Msp20I TGGCCA 2 cut(s) 122, 460
MspA1I CMGCKG 1 cut(s) 76
MspCI CTTAAG 1 cut(s) 1337
MspR9I CCNGG 1 cut(s) 345
MvaI CCWGG 1 cut(s) 345
MvnI CGCG 1 cut(s) 89
MwoI GCNNNNNNNGC 5 cut(s) 428, 466, 955, 1063, 1100
NcoI CCATGG 1 cut(s) 117
NlaIII CATG 6 cut(s) 121, 504, 858, 863, 1161, 1355
NspI RCATGY 1 cut(s) 858
PaeI GCATGC 1 cut(s) 858
PaeR7I CTCGAG 2 cut(s) 29, 1391
PceI AGGCCT 1 cut(s) 223
PdmI GAANNNNTTC 2 cut(s) 645, 1406
PfeI GAWTC 3 cut(s) 331, 397, 476
PflMI CCANNNNNTGG 1 cut(s) 865
PkrI GCNGC 1 cut(s) 1093
PleI GAGTC 1 cut(s) 358
PpsI GAGTC 1 cut(s) 358
Psp124BI GAGCTC 2 cut(s) 671, 751
Psp1406I AACGTT 1 cut(s) 588
Psp6I CCWGG 1 cut(s) 343
PspGI CCWGG 1 cut(s) 343
PsuI RGATCY 2 cut(s) 145, 1243
RsaI GTAC 3 cut(s) 984, 1397, 1457
RsaNI GTAC 3 cut(s) 983, 1396, 1456
RseI CAYNNNNRTG 2 cut(s) 689, 915
SacI GAGCTC 2 cut(s) 671, 751
SaqAI TTAA 3 cut(s) 987, 1307, 1338
SatI GCNGC 1 cut(s) 1092
ScaI AGTACT 3 cut(s) 984, 1397, 1457
SchI GAGTC 1 cut(s) 359
ScrFI CCNGG 1 cut(s) 345
SduI GDGCHC 5 cut(s) 158, 671, 751, 951, 1206
SfaNI GCATC 2 cut(s) 456, 1258
Sfr274I CTCGAG 2 cut(s) 29, 1391
SlaI CTCGAG 2 cut(s) 29, 1391
SmiMI CAYNNNNRTG 2 cut(s) 689, 915
SmlI CTYRAG 4 cut(s) 29, 316, 1337, 1391
SmoI CTYRAG 4 cut(s) 29, 316, 1337, 1391
SphI GCATGC 1 cut(s) 858
SseBI AGGCCT 1 cut(s) 223
SsiI CCGC 2 cut(s) 76, 89
SspMI CTAG 5 cut(s) 423, 432, 938, 1290, 1492
SstI GAGCTC 2 cut(s) 671, 751
StuI AGGCCT 1 cut(s) 223
StyD4I CCNGG 1 cut(s) 343
StyI CCWWGG 3 cut(s) 117, 392, 417
TaaI ACNGT 4 cut(s) 359, 574, 660, 1465
TaiI ACGT 1 cut(s) 591
TaqI TCGA 8 cut(s) 30, 49, 102, 441, 447, 621, 1208, 1392
TatI WGTACW 3 cut(s) 982, 1395, 1455
TfiI GAWTC 3 cut(s) 331, 397, 476
Tru1I TTAA 3 cut(s) 987, 1307, 1338
Tru9I TTAA 3 cut(s) 987, 1307, 1338
TscAI CASTG 3 cut(s) 1373, 1470, 1483
TseI GCWGC 1 cut(s) 1091
TspDTI ATGAA 4 cut(s) 244, 489, 1340, 1399
TspGWI ACGGA 2 cut(s) 173, 1376
TspRI CASTG 3 cut(s) 1373, 1470, 1483
Van91I CCANNNNNTGG 1 cut(s) 865
Vha464I CTTAAG 1 cut(s) 1337
XapI RAATTY 7 cut(s) 7, 837, 1177, 1211, 1228, 1303, 1437
XceI RCATGY 1 cut(s) 858
XhoI CTCGAG 2 cut(s) 29, 1391
XmiI GTMKAC 1 cut(s) 175
XmnI GAANNNNTTC 2 cut(s) 645, 1406
XspI CTAG 5 cut(s) 423, 432, 938, 1290, 1492
ZrmI AGTACT 3 cut(s) 984, 1397, 1457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.