Rh2DG245100

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000917
Physical Location & Seq
Forward (+)
24995840 .. 24998243
2404 bp
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UTR
Exon/CDS
Intron
Rh2DG245100.1

Sequence Viewer

Length: 1482 bp
ATGGCAAATTCCGAGGCGGCGTTGGGTGATCCACCTGAGGAAATATCACAAGATCAGCGGAAACTGAGCGCGGAGGAAATTTTCGATAAAAGTGAGGCCATGACCAACATAAGGAGGAGTTATGGAGATCTTCGGGGCACGGAATTGAAGGTCTGTCTACTTTCTTTCTCAATCTTCCCTGAGGGTTCTGAGATAAGAAAGAGGCCTCTAATTTACTGGTGGATCGGCGAGGGCTTCATCACGGCTACCAAAGAGAAGACAGCAGAGGAGATAGGAGAAGACATCTTTGCAAAACTCTTGAGAAAGGACTTGATTCAACCAGCTACAGGTCAGTCCAACTGTGAATTACTTGTCAAAAATTGTTGTGTTCACCCTTGGATTCGTCGTATGTTGATCTCCTTGGCTAGAGAGGCTAAGCTGTTCGACTTCGATCCCAAATGGCCAATGATGCCATCTGATTCTATATGGACTTGTAGGCGTTCATGTTTAGTTTCTAAGGAGGATAAGTCAATAACTCCTCAGGGTGATGATCAATGGAAACAAAATCTATTGACAGTATTCAATGTAAACGTTCAATATCTTGATTTGAAACAAGAATGGCTCGACAAGTTGAAGAGGGTTGAAGTTCTTCACTTCGGACGGTGGCAGAGCTCCCCCAAATATCACATTGAAGTGGATCAGAAAACATTTGATGGTTCACAAGCTGTATCGTTTCTAAATGGTTTGGGAGCTCAGAAGCACTTGAAGTATCTTAGCCTCAGAGGAATATCAAGAATTAGTGAACTCCCTGCTTCTATTCGTAGTCTTATCAGCCTTGAAATTCTCGATCTGAGAGCATGCCATGACTTGGAGAGGTTGCCTTCAGACATCTCATCATTGAAGAAGCTCACGCATTTGGATGTATCAGAGTGTTACTTACTAGAAGGCATGCCCAAAGGGCTTCACAAACTTTCTTCCCTGCAAGTACTAAAAGGTTTTCTGATAGGATCACAGGAAAAAACTCCCACCAAACTTGGTGAACTTGCAACATTGAAGAAGCTAAGGAGGCTCAGCATACACATTGGGAATGGGGCTGCAATTCAAGCAGGGGAGTTTGAAAAGTTGAAAGTTATGTCATCTCTTCGCTTCCTGAAAGTATCATGGGGAGTGGTTTCTAAAAATTTAACAGAGATTGATGATGAGTCCTCGAAATTCTTGTTTCCAGAGAATTTAGAAAAATTGGATCTTCAAGGGTTTTCTCTACCAAAGGCACCAGAAGGGTTGAAGCCTAGCAAACTGAAAAATTTAAAGAAGCTCTATATAAGGGGTGGGGAACTTCAGAGCTTGGATCTTGAGGAAAATGAGCCGCTATGGAAAGTGGAAATCTTGCGTCTCAAGTACTTGGAGAAGTTCATAAAATCAGAAGAAGAAGTGAAGAGAATTTTTCCTCATCTGAAGTACTGGACAGTGGATACAGAGAACTCCAGTAAAGCTGAAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

493

Amino Acids

56.38

Weight (kDa)

8.41

Isoelectric Point (pI)

55.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_DRP PF23559 58 - 128 1.4e-14 Disease resistance protein Winged helix domain
LRR_R13L1-DRL21 PF25019 195 - 304 1e-05 R13L1/DRL21 LRRs
LRR_14 PF23598 239 - 484 1.1e-30 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1249
AccB7I CCANNNNNTGG 1 cut(s) 847
AccI GTMKAC 1 cut(s) 157
AccII CGCG 1 cut(s) 71
AciI CCGC 4 cut(s) 17, 58, 71, 1346
AclI AACGTT 1 cut(s) 570
AclWI GGATC 7 cut(s) 23, 230, 425, 684, 994, 1230, 1335
AcoI YGGCCR 1 cut(s) 440
AcsI RAATTY 8 cut(s) 7, 78, 819, 1159, 1190, 1207, 1282, 1419
AcuI CTGAAG 3 cut(s) 846, 1301, 1454
AfaI GTAC 3 cut(s) 966, 1379, 1439
AfiI CCNNNNNNNGG 3 cut(s) 111, 326, 847
Alw21I GWGCWC 2 cut(s) 653, 733
Alw26I GTCTC 1 cut(s) 1376
AlwI GGATC 7 cut(s) 23, 230, 425, 684, 994, 1230, 1335
AoxI GGCC 3 cut(s) 96, 203, 440
ApeKI GCWGC 1 cut(s) 1073
ApoI RAATTY 8 cut(s) 7, 78, 819, 1159, 1190, 1207, 1282, 1419
Asp700I GAANNNNTTC 1 cut(s) 627
AspLEI GCGC 1 cut(s) 71
AsuHPI GGTGA 4 cut(s) 38, 362, 536, 1028
AxyI CCTNAGG 3 cut(s) 36, 180, 519
BaeGI GKGCMC 1 cut(s) 140
BalI TGGCCA 1 cut(s) 442
BanI GGYRCC 1 cut(s) 1249
BanII GRGCYC 2 cut(s) 653, 733
BbsI GAAGAC 2 cut(s) 263, 285
Bbv12I GWGCWC 2 cut(s) 653, 733
BbvI GCAGC 1 cut(s) 1060
BccI CCATC 2 cut(s) 460, 686
BceAI ACGGC 1 cut(s) 258
BciVI GTATCC 1 cut(s) 1444
BclI TGATCA 1 cut(s) 529
BcoDI GTCTC 1 cut(s) 1376
BfaI CTAG 4 cut(s) 405, 920, 1269, 1480
BfmI CTRYAG 1 cut(s) 324
BfuI GTATCC 1 cut(s) 1444
BglI GCCNNNNNGGC 1 cut(s) 937
BglII AGATCT 1 cut(s) 127
BisI GCNGC 3 cut(s) 18, 1074, 1346
BlpI GCTNAGC 2 cut(s) 414, 1049
BlsI GCNGC 3 cut(s) 19, 1075, 1347
BmcAI AGTACT 3 cut(s) 966, 1379, 1439
BmiI GGNNCC 1 cut(s) 1251
BmsI GCATC 1 cut(s) 438
BpiI GAAGAC 2 cut(s) 263, 285
BpmI CTGGAG 1 cut(s) 1447
Bpu10I CCTNAGC 1 cut(s) 1040
Bpu1102I GCTNAGC 2 cut(s) 414, 1049
BpuEI CTTGAG 3 cut(s) 319, 1352, 1358
BsaJI CCNNGG 3 cut(s) 12, 374, 399
BsaXI ACNNNNNCTCC 2 cut(s) 491, 521
Bsc4I CCNNNNNNNGG 3 cut(s) 111, 326, 847
Bse1I ACTGG 3 cut(s) 221, 1445, 1464
Bse21I CCTNAGG 3 cut(s) 36, 180, 519
BseDI CCNNGG 3 cut(s) 12, 374, 399
BseGI GGATG 1 cut(s) 904
BseLI CCNNNNNNNGG 3 cut(s) 111, 326, 847
BseMII CTCAG 9 cut(s) 27, 56, 171, 180, 533, 746, 772, 821, 1063
BseNI ACTGG 3 cut(s) 221, 1445, 1464
BseRI GAGGAG 3 cut(s) 130, 281, 507
BseSI GKGCMC 1 cut(s) 140
BseXI GCAGC 1 cut(s) 1060
Bsh1236I CGCG 1 cut(s) 71
BshFI GGCC 3 cut(s) 98, 205, 442
BshNI GGYRCC 1 cut(s) 1249
BsiHKAI GWGCWC 2 cut(s) 653, 733
BslI CCNNNNNNNGG 3 cut(s) 111, 326, 847
BsmAI GTCTC 1 cut(s) 1376
BsmBI CGTCTC 1 cut(s) 1376
BsnI GGCC 3 cut(s) 98, 205, 442
Bsp1286I GDGCHC 3 cut(s) 140, 653, 733
Bsp1720I GCTNAGC 2 cut(s) 414, 1049
BspACI CCGC 4 cut(s) 17, 58, 71, 1346
BspANI GGCC 3 cut(s) 98, 205, 442
BspCNI CTCAG 9 cut(s) 28, 57, 172, 181, 532, 745, 771, 822, 1062
BspFNI CGCG 1 cut(s) 71
BspLI GGNNCC 1 cut(s) 1251
BspPI GGATC 7 cut(s) 23, 230, 425, 684, 994, 1230, 1335
BspT107I GGYRCC 1 cut(s) 1249
BsrI ACTGG 3 cut(s) 221, 1445, 1464
BssECI CCNNGG 3 cut(s) 12, 374, 399
BssT1I CCWWGG 2 cut(s) 374, 399
Bst4CI ACNGT 4 cut(s) 341, 556, 642, 1447
Bst6I CTCTTC 3 cut(s) 608, 1125, 1409
BstC8I GCNNGC 2 cut(s) 838, 929
BstF5I GGATG 1 cut(s) 904
BstFNI CGCG 1 cut(s) 71
BstHHI GCGC 1 cut(s) 71
BstMAI GTCTC 1 cut(s) 1376
BstMWI GCNNNNNNNGC 5 cut(s) 410, 448, 937, 1045, 1082
BstNSI RCATGY 2 cut(s) 840, 931
BstSFI CTRYAG 1 cut(s) 324
BstSLI GKGCMC 1 cut(s) 140
BstUI CGCG 1 cut(s) 71
BstV1I GCAGC 1 cut(s) 1060
BstV2I GAAGAC 2 cut(s) 263, 285
BstX2I RGATCY 3 cut(s) 127, 1222, 1327
BstYI RGATCY 3 cut(s) 127, 1222, 1327
Bsu36I CCTNAGG 3 cut(s) 36, 180, 519
BsuI GTATCC 1 cut(s) 1444
BsuRI GGCC 3 cut(s) 98, 205, 442
BtsCI GGATG 1 cut(s) 904
BtsIMutI CAGTG 1 cut(s) 1452
Cac8I GCNNGC 2 cut(s) 838, 929
CfoI GCGC 1 cut(s) 71
CseI GACGC 1 cut(s) 1358
Csp6I GTAC 3 cut(s) 965, 1378, 1438
CspCI CAANNNNNGTGG 2 cut(s) 994, 1029
CviAII CATG 6 cut(s) 100, 483, 837, 842, 928, 1140
CviQI GTAC 3 cut(s) 965, 1378, 1438
DraI TTTAAA 1 cut(s) 1287
EaeI YGGCCR 1 cut(s) 440
Eam1104I CTCTTC 3 cut(s) 608, 1125, 1409
EarI CTCTTC 3 cut(s) 608, 1125, 1409
Ecl136II GAGCTC 2 cut(s) 651, 731
Eco130I CCWWGG 2 cut(s) 374, 399
Eco147I AGGCCT 1 cut(s) 205
Eco24I GRGCYC 2 cut(s) 653, 733
Eco53kI GAGCTC 2 cut(s) 651, 731
Eco57I CTGAAG 3 cut(s) 846, 1301, 1454
Eco81I CCTNAGG 3 cut(s) 36, 180, 519
EcoICRI GAGCTC 2 cut(s) 651, 731
EcoT14I CCWWGG 2 cut(s) 374, 399
EcoT38I GRGCYC 2 cut(s) 653, 733
ErhI CCWWGG 2 cut(s) 374, 399
Esp3I CGTCTC 1 cut(s) 1376
FaeI CATG 6 cut(s) 103, 486, 840, 845, 931, 1143
FatI CATG 6 cut(s) 99, 482, 836, 841, 927, 1139
FbaI TGATCA 1 cut(s) 529
FblI GTMKAC 1 cut(s) 157
Fnu4HI GCNGC 3 cut(s) 18, 1074, 1346
FokI GGATG 1 cut(s) 911
FriOI GRGCYC 2 cut(s) 653, 733
Fsp4HI GCNGC 3 cut(s) 18, 1074, 1346
FspBI CTAG 4 cut(s) 405, 920, 1269, 1480
GlaI GCGC 1 cut(s) 70
GluI GCNGC 3 cut(s) 18, 1074, 1346
GsuI CTGGAG 1 cut(s) 1447
HaeIII GGCC 3 cut(s) 98, 205, 442
HgaI GACGC 1 cut(s) 1358
HhaI GCGC 1 cut(s) 71
Hin1II CATG 6 cut(s) 103, 486, 840, 845, 931, 1143
Hin6I GCGC 1 cut(s) 69
HinP1I GCGC 1 cut(s) 69
HinfI GANTC 4 cut(s) 313, 379, 458, 1181
HphI GGTGA 4 cut(s) 38, 362, 536, 1028
Hpy166II GTNNAC 6 cut(s) 158, 370, 568, 698, 782, 1019
Hpy188III TCNNGA 7 cut(s) 298, 581, 771, 824, 1129, 1202, 1331
Hpy8I GTNNAC 6 cut(s) 158, 370, 568, 698, 782, 1019
Hpy99I CGWCG 1 cut(s) 387
HpyAV CCTTC 5 cut(s) 142, 870, 917, 1250, 1469
HpyCH4III ACNGT 4 cut(s) 341, 556, 642, 1447
HpyCH4IV ACGT 1 cut(s) 570
HpyCH4V TGCA 4 cut(s) 290, 961, 1025, 1076
HpyF10VI GCNNNNNNNGC 5 cut(s) 410, 448, 937, 1045, 1082
HpySE526I ACGT 1 cut(s) 570
Hsp92II CATG 6 cut(s) 103, 486, 840, 845, 931, 1143
HspAI GCGC 1 cut(s) 69
Ksp22I TGATCA 1 cut(s) 529
LmnI GCTCC 2 cut(s) 656, 728
Lsp1109I GCAGC 1 cut(s) 1060
LweI GCATC 1 cut(s) 438
MaeI CTAG 4 cut(s) 405, 920, 1269, 1480
MaeII ACGT 1 cut(s) 570
MaeIII GTNAC 1 cut(s) 911
MflI RGATCY 3 cut(s) 127, 1222, 1327
MhlI GDGCHC 3 cut(s) 140, 653, 733
MlsI TGGCCA 1 cut(s) 442
MluNI TGGCCA 1 cut(s) 442
MlyI GAGTC 1 cut(s) 1190
MmeI TCCRAC 1 cut(s) 360
Mox20I TGGCCA 1 cut(s) 442
MroXI GAANNNNTTC 1 cut(s) 627
MscI TGGCCA 1 cut(s) 442
MseI TTAA 2 cut(s) 1163, 1286
MslI CAYNNNNRTG 2 cut(s) 671, 897
Msp20I TGGCCA 1 cut(s) 442
MspA1I CMGCKG 1 cut(s) 58
MvnI CGCG 1 cut(s) 71
MwoI GCNNNNNNNGC 5 cut(s) 410, 448, 937, 1045, 1082
NlaIII CATG 6 cut(s) 103, 486, 840, 845, 931, 1143
NlaIV GGNNCC 1 cut(s) 1251
NspI RCATGY 2 cut(s) 840, 931
PaeI GCATGC 2 cut(s) 840, 931
PceI AGGCCT 1 cut(s) 205
PdmI GAANNNNTTC 1 cut(s) 627
PfeI GAWTC 3 cut(s) 313, 379, 458
PflMI CCANNNNNTGG 1 cut(s) 847
PkrI GCNGC 3 cut(s) 19, 1075, 1347
PleI GAGTC 1 cut(s) 1189
PpsI GAGTC 1 cut(s) 1189
Psp124BI GAGCTC 2 cut(s) 653, 733
Psp1406I AACGTT 1 cut(s) 570
PspN4I GGNNCC 1 cut(s) 1251
PsuI RGATCY 3 cut(s) 127, 1222, 1327
RsaI GTAC 3 cut(s) 966, 1379, 1439
RsaNI GTAC 3 cut(s) 965, 1378, 1438
RseI CAYNNNNRTG 2 cut(s) 671, 897
SacI GAGCTC 2 cut(s) 653, 733
SaqAI TTAA 2 cut(s) 1163, 1286
SatI GCNGC 3 cut(s) 18, 1074, 1346
ScaI AGTACT 3 cut(s) 966, 1379, 1439
SchI GAGTC 1 cut(s) 1190
SduI GDGCHC 3 cut(s) 140, 653, 733
SfaNI GCATC 1 cut(s) 438
SfcI CTRYAG 1 cut(s) 324
SmiMI CAYNNNNRTG 2 cut(s) 671, 897
SmlI CTYRAG 3 cut(s) 298, 1331, 1373
SmoI CTYRAG 3 cut(s) 298, 1331, 1373
SphI GCATGC 2 cut(s) 840, 931
SseBI AGGCCT 1 cut(s) 205
SsiI CCGC 4 cut(s) 17, 58, 71, 1346
SspMI CTAG 4 cut(s) 405, 920, 1269, 1480
SstI GAGCTC 2 cut(s) 653, 733
StuI AGGCCT 1 cut(s) 205
StyI CCWWGG 2 cut(s) 374, 399
TaaI ACNGT 4 cut(s) 341, 556, 642, 1447
TaiI ACGT 1 cut(s) 573
TaqI TCGA 6 cut(s) 84, 423, 429, 603, 825, 1187
TatI WGTACW 3 cut(s) 964, 1377, 1437
TauI GCSGC 2 cut(s) 20, 1348
TfiI GAWTC 3 cut(s) 313, 379, 458
Tru1I TTAA 2 cut(s) 1163, 1286
Tru9I TTAA 2 cut(s) 1163, 1286
TscAI CASTG 1 cut(s) 1452
TseI GCWGC 1 cut(s) 1073
TspDTI ATGAA 3 cut(s) 226, 471, 1381
TspGWI ACGGA 1 cut(s) 155
TspRI CASTG 1 cut(s) 1452
Van91I CCANNNNNTGG 1 cut(s) 847
XapI RAATTY 8 cut(s) 7, 78, 819, 1159, 1190, 1207, 1282, 1419
XceI RCATGY 2 cut(s) 840, 931
XmiI GTMKAC 1 cut(s) 157
XmnI GAANNNNTTC 1 cut(s) 627
XspI CTAG 4 cut(s) 405, 920, 1269, 1480
ZrmI AGTACT 3 cut(s) 966, 1379, 1439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.