Rorug02G0431500

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000917
Physical Location & Seq
Forward (+)
55324842 .. 55329115
4274 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0431500.1

Sequence Viewer

Length: 1119 bp
ATGAGTTCAACATCTGTGAAACCCAACATGTTGCCTGCGGGCCTGGTCTCCAATCTCCAAGACGTGTTGAGCAAAAGAGGTGGAGGTGACCAACCCACTGAGCCTTCAACTTCTGAAGCTGCAGAGGACCCTGTTGATAGTTCCAAGCCCATCGTTTTGGTCACCAATGGTGATGGGATTGACTCCCCTGGTCTTACTTACCTTATTGAAGCTCTCGTCCGCCAAGGCCTTTACAATGTCCATGTCTGCGCTCCTCAATCGGACAAATCAGTATCCGGTCATTCCGTGACTCTCCGAGAAACGGTTTCTGTTAGTTCTACTGTGATAAATGGTGCCACAGCTTATGAAGTTGCAGGCACTCCCGTAGATTGTGTCTCATTAGCGTTATCTGGCGCACTGTTTTCTTGGTCAAAGCCTCTGCTGGTAATCAGTGGAATCAACCGGGGATCAAACTGTGGCCATCACATGTTGTACTCGGGTGTTGTTGCTGGAGCTAGGGAGGCACTAATAAGTGGAGTGCCCTCGTTATCAATATCACTAAATTGGAGGAAGGATGAAAGTCAAGAAAATGATTTCAAAGATGCAGTTGCTGTTTGTTTACCTCTAATAAATGCAGCTATCAGGGATATTGAGAAGGGGGAATTCCCCAAGAGTTGCTTTCTGAATATAGAGATTCCTTCATCTCCTTTATCAAACAAGGGGTTTAAAATAACCAAGCAAAGCACGTGGAGATCTACTCCCAGCTGGCAAGCTGTTTCAGCTAATCGTTATCCTCCTGGACATTTCATGAACAATCAACAAAGCCTTGGGATTCAGCTTGCACAACTTGGCCGAGATGCATCTGCTGCTGGTGCAGCTCGTCGTGTGACGACACAGAAGAAGAATGTGGAGATTGAATCAACTGGAGCTGCAGGAAAACCTGATTTTGAACGGGTGAAAAAGTACTTCCGACTAGAGTTTGTGGATAAAGAGCAGGAAAATACGGATGAGGATCTGGATTTCAGAGCACTCGAAAGTGGATTTGTATCAGTAACTCCTCTTTCCCTTTCACCACATCTCGAGTCCGATACTCAAACAGCTGCCACCAATTGGATCTCATCTGCACTTCAAGAGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

372

Amino Acids

39.82

Weight (kDa)

5.37

Isoelectric Point (pI)

41.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SurE PF01975 52 - 244 6.5e-52 Survival protein SurE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 332
AccB7I CCANNNNNTGG 1 cut(s) 1089
AciI CCGC 2 cut(s) 38, 220
AclWI GGATC 3 cut(s) 454, 999, 1100
AcoI YGGCCR 2 cut(s) 457, 829
AcsI RAATTY 1 cut(s) 641
AcuI CTGAAG 1 cut(s) 135
AcvI CACGTG 1 cut(s) 726
AfaI GTAC 2 cut(s) 473, 944
AfiI CCNNNNNNNGG 2 cut(s) 301, 1089
AflIII ACRYGT 3 cut(s) 27, 63, 465
AgsI TTSAA 7 cut(s) 9, 108, 209, 577, 896, 929, 1109
AjiI CACGTC 1 cut(s) 64
AjnI CCWGG 3 cut(s) 42, 187, 775
Alw21I GWGCWC 1 cut(s) 1009
Alw26I GTCTC 2 cut(s) 52, 379
AlwI GGATC 3 cut(s) 454, 999, 1100
AlwNI CAGNNNCTG 1 cut(s) 590
Ama87I CYCGRG 2 cut(s) 475, 1058
AoxI GGCC 4 cut(s) 40, 226, 457, 829
ApeKI GCWGC 6 cut(s) 119, 614, 845, 854, 908, 1079
ApoI RAATTY 1 cut(s) 641
AspLEI GCGC 2 cut(s) 251, 395
AspS9I GGNCC 2 cut(s) 40, 127
AsuC2I CCSGG 1 cut(s) 443
AsuHPI GGTGA 5 cut(s) 98, 154, 182, 946, 1041
AvaI CYCGRG 2 cut(s) 475, 1058
AvaII GGWCC 1 cut(s) 127
BaeGI GKGCMC 1 cut(s) 522
BalI TGGCCA 1 cut(s) 459
BanI GGYRCC 1 cut(s) 332
BbrPI CACGTG 1 cut(s) 726
Bbv12I GWGCWC 1 cut(s) 1009
BbvI GCAGC 6 cut(s) 106, 626, 832, 866, 895, 1066
BccI CCATC 3 cut(s) 158, 167, 468
BciT130I CCWGG 3 cut(s) 44, 189, 777
BciVI GTATCC 1 cut(s) 283
BcnI CCSGG 1 cut(s) 443
BcoDI GTCTC 2 cut(s) 52, 379
BfaI CTAG 2 cut(s) 495, 953
BfmI CTRYAG 2 cut(s) 120, 909
BfuI GTATCC 1 cut(s) 283
BglII AGATCT 1 cut(s) 731
BisI GCNGC 6 cut(s) 120, 615, 846, 855, 909, 1080
BlsI GCNGC 6 cut(s) 121, 616, 847, 856, 910, 1081
BmcAI AGTACT 1 cut(s) 944
Bme1390I CCNGG 4 cut(s) 44, 189, 443, 777
Bme18I GGWCC 1 cut(s) 127
BmeT110I CYCGRG 2 cut(s) 475, 1058
BmgBI CACGTC 1 cut(s) 64
BmgT120I GGNCC 2 cut(s) 40, 127
BmiI GGNNCC 2 cut(s) 129, 334
BmrFI CCNGG 4 cut(s) 44, 189, 443, 777
BmsI GCATC 3 cut(s) 571, 826, 848
BplI GAGNNNNNCTC 2 cut(s) 721, 753
BpmI CTGGAG 2 cut(s) 510, 924
BpuMI CCSGG 1 cut(s) 443
BsaAI YACGTR 1 cut(s) 726
BsaBI GATNNNNATC 2 cut(s) 990, 1024
BsaI GGTCTC 1 cut(s) 52
BsaJI CCNNGG 4 cut(s) 187, 223, 442, 805
BsaWI WCCGGW 1 cut(s) 275
Bsc4I CCNNNNNNNGG 2 cut(s) 301, 1089
Bse1I ACTGG 1 cut(s) 907
Bse8I GATNNNNATC 2 cut(s) 990, 1024
BseBI CCWGG 3 cut(s) 44, 189, 777
BseDI CCNNGG 4 cut(s) 187, 223, 442, 805
BseGI GGATG 2 cut(s) 559, 991
BseJI GATNNNNATC 2 cut(s) 990, 1024
BseLI CCNNNNNNNGG 2 cut(s) 301, 1089
BseMII CTCAG 1 cut(s) 90
BseNI ACTGG 1 cut(s) 907
BseRI GAGGAG 2 cut(s) 243, 1026
BseSI GKGCMC 1 cut(s) 522
BseXI GCAGC 6 cut(s) 106, 626, 832, 866, 895, 1066
BseYI CCCAGC 1 cut(s) 740
BsgI GTGCAG 2 cut(s) 873, 1086
BshFI GGCC 4 cut(s) 42, 228, 459, 831
BshNI GGYRCC 1 cut(s) 332
BsiHKAI GWGCWC 1 cut(s) 1009
BsiHKCI CYCGRG 2 cut(s) 475, 1058
BsiSI CCGG 2 cut(s) 276, 442
BslI CCNNNNNNNGG 2 cut(s) 301, 1089
BsmAI GTCTC 2 cut(s) 52, 379
BsnI GGCC 4 cut(s) 42, 228, 459, 831
Bso31I GGTCTC 1 cut(s) 52
BsoBI CYCGRG 2 cut(s) 475, 1058
Bsp1286I GDGCHC 2 cut(s) 522, 1009
Bsp143I GATC 4 cut(s) 446, 731, 991, 1092
BspACI CCGC 2 cut(s) 38, 220
BspANI GGCC 4 cut(s) 42, 228, 459, 831
BspCNI CTCAG 1 cut(s) 91
BspHI TCATGA 1 cut(s) 786
BspLI GGNNCC 2 cut(s) 129, 334
BspMAI CTGCAG 2 cut(s) 124, 913
BspPI GGATC 3 cut(s) 454, 999, 1100
BspT107I GGYRCC 1 cut(s) 332
BspTNI GGTCTC 1 cut(s) 52
BsrI ACTGG 1 cut(s) 907
BssECI CCNNGG 4 cut(s) 187, 223, 442, 805
BssMI GATC 4 cut(s) 446, 731, 991, 1092
BssT1I CCWWGG 2 cut(s) 223, 805
Bst2UI CCWGG 3 cut(s) 44, 189, 777
Bst4CI ACNGT 4 cut(s) 304, 322, 399, 455
BstAPI GCANNNNNTGC 1 cut(s) 845
BstBAI YACGTR 1 cut(s) 726
BstC8I GCNNGC 6 cut(s) 36, 40, 355, 746, 750, 819
BstDEI CTNAG 1 cut(s) 99
BstEII GGTNACC 2 cut(s) 86, 160
BstF5I GGATG 2 cut(s) 559, 991
BstHHI GCGC 2 cut(s) 251, 395
BstKTI GATC 4 cut(s) 449, 734, 994, 1095
BstMAI GTCTC 2 cut(s) 52, 379
BstMBI GATC 4 cut(s) 446, 731, 991, 1092
BstMWI GCNNNNNNNGC 5 cut(s) 500, 758, 845, 851, 854
BstNI CCWGG 3 cut(s) 44, 189, 777
BstNSI RCATGY 2 cut(s) 31, 469
BstPI GGTNACC 2 cut(s) 86, 160
BstSCI CCNGG 4 cut(s) 42, 187, 441, 775
BstSFI CTRYAG 2 cut(s) 120, 909
BstSLI GKGCMC 1 cut(s) 522
BstV1I GCAGC 6 cut(s) 106, 626, 832, 866, 895, 1066
BstX2I RGATCY 3 cut(s) 731, 991, 1092
BstXI CCANNNNNNTGG 1 cut(s) 157
BstYI RGATCY 3 cut(s) 731, 991, 1092
BsuI GTATCC 1 cut(s) 283
BsuRI GGCC 4 cut(s) 42, 228, 459, 831
BtrI CACGTC 1 cut(s) 64
BtsCI GGATG 2 cut(s) 559, 991
BtsIMutI CAGTG 3 cut(s) 96, 395, 436
Cac8I GCNNGC 6 cut(s) 36, 40, 355, 746, 750, 819
CaiI CAGNNNCTG 1 cut(s) 590
CciI TCATGA 1 cut(s) 786
CfoI GCGC 2 cut(s) 251, 395
Cfr13I GGNCC 2 cut(s) 40, 127
Csp6I GTAC 2 cut(s) 472, 943
CspCI CAANNNNNGTGG 4 cut(s) 61, 96, 707, 742
CviAII CATG 4 cut(s) 28, 242, 466, 787
CviQI GTAC 2 cut(s) 472, 943
DdeI CTNAG 1 cut(s) 99
DpnI GATC 4 cut(s) 448, 733, 993, 1094
DpnII GATC 4 cut(s) 446, 731, 991, 1092
DraI TTTAAA 1 cut(s) 706
EaeI YGGCCR 2 cut(s) 457, 829
EciI GGCGGA 1 cut(s) 209
Eco130I CCWWGG 2 cut(s) 223, 805
Eco147I AGGCCT 1 cut(s) 228
Eco31I GGTCTC 1 cut(s) 52
Eco47I GGWCC 1 cut(s) 127
Eco57I CTGAAG 1 cut(s) 135
Eco72I CACGTG 1 cut(s) 726
Eco88I CYCGRG 2 cut(s) 475, 1058
Eco91I GGTNACC 2 cut(s) 86, 160
EcoO109I RGGNCCY 1 cut(s) 127
EcoO65I GGTNACC 2 cut(s) 86, 160
EcoRI GAATTC 1 cut(s) 641
EcoRII CCWGG 3 cut(s) 42, 187, 775
EcoT14I CCWWGG 2 cut(s) 223, 805
EcoT22I ATGCAT 1 cut(s) 841
ErhI CCWWGG 2 cut(s) 223, 805
FaeI CATG 4 cut(s) 31, 245, 469, 790
FaiI YATR 6 cut(s) 29, 243, 345, 467, 668, 788
FalI AAGNNNNNCTT 2 cut(s) 641, 673
FatI CATG 4 cut(s) 27, 241, 465, 786
FauI CCCGC 1 cut(s) 31
Fnu4HI GCNGC 6 cut(s) 120, 615, 846, 855, 909, 1080
FokI GGATG 2 cut(s) 566, 998
Fsp4HI GCNGC 6 cut(s) 120, 615, 846, 855, 909, 1080
FspBI CTAG 2 cut(s) 495, 953
GlaI GCGC 2 cut(s) 250, 394
GluI GCNGC 6 cut(s) 120, 615, 846, 855, 909, 1080
GsaI CCCAGC 1 cut(s) 744
GsuI CTGGAG 2 cut(s) 510, 924
HaeIII GGCC 4 cut(s) 42, 228, 459, 831
HapII CCGG 2 cut(s) 276, 442
HhaI GCGC 2 cut(s) 251, 395
Hin1II CATG 4 cut(s) 31, 245, 469, 790
Hin6I GCGC 2 cut(s) 249, 393
HinP1I GCGC 2 cut(s) 249, 393
HinfI GANTC 7 cut(s) 182, 289, 435, 673, 811, 896, 1061
HpaII CCGG 2 cut(s) 276, 442
HphI GGTGA 5 cut(s) 98, 154, 182, 946, 1041
Hpy166II GTNNAC 1 cut(s) 599
Hpy188I TCNGA 7 cut(s) 115, 262, 296, 663, 950, 1004, 1066
Hpy188III TCNNGA 5 cut(s) 563, 787, 995, 1058, 1109
Hpy8I GTNNAC 1 cut(s) 599
Hpy99I CGWCG 1 cut(s) 864
HpyAV CCTTC 4 cut(s) 114, 544, 628, 687
HpyCH4III ACNGT 4 cut(s) 304, 322, 399, 455
HpyCH4IV ACGT 2 cut(s) 63, 725
HpyCH4V TGCA 9 cut(s) 122, 353, 584, 614, 821, 839, 854, 911, 1103
HpyF10VI GCNNNNNNNGC 5 cut(s) 500, 758, 845, 851, 854
HpyF3I CTNAG 1 cut(s) 99
HpySE526I ACGT 2 cut(s) 63, 725
Hsp92II CATG 4 cut(s) 31, 245, 469, 790
HspAI GCGC 2 cut(s) 249, 393
Kzo9I GATC 4 cut(s) 446, 731, 991, 1092
LmnI GCTCC 3 cut(s) 256, 491, 905
Lsp1109I GCAGC 6 cut(s) 106, 626, 832, 866, 895, 1066
LweI GCATC 3 cut(s) 571, 826, 848
MaeI CTAG 2 cut(s) 495, 953
MaeII ACGT 2 cut(s) 63, 725
MaeIII GTNAC 5 cut(s) 86, 160, 286, 865, 1030
MalI GATC 4 cut(s) 448, 733, 993, 1094
MboI GATC 4 cut(s) 446, 731, 991, 1092
MboII GAAGA 2 cut(s) 889, 892
MfeI CAATTG 1 cut(s) 1087
MflI RGATCY 3 cut(s) 731, 991, 1092
MhlI GDGCHC 2 cut(s) 522, 1009
MlsI TGGCCA 1 cut(s) 459
MluCI AATT 3 cut(s) 541, 641, 1087
MluNI TGGCCA 1 cut(s) 459
MlyI GAGTC 3 cut(s) 176, 283, 1070
MmeI TCCRAC 1 cut(s) 973
Mox20I TGGCCA 1 cut(s) 459
Mph1103I ATGCAT 1 cut(s) 841
MscI TGGCCA 1 cut(s) 459
MseI TTAA 1 cut(s) 705
Msp20I TGGCCA 1 cut(s) 459
MspA1I CMGCKG 2 cut(s) 744, 1079
MspI CCGG 2 cut(s) 276, 442
MspR9I CCNGG 4 cut(s) 44, 189, 443, 777
MunI CAATTG 1 cut(s) 1087
MvaI CCWGG 3 cut(s) 44, 189, 777
MwoI GCNNNNNNNGC 5 cut(s) 500, 758, 845, 851, 854
NciI CCSGG 1 cut(s) 443
NdeII GATC 4 cut(s) 446, 731, 991, 1092
NlaIII CATG 4 cut(s) 31, 245, 469, 790
NlaIV GGNNCC 2 cut(s) 129, 334
NmeAIII GCCGAG 1 cut(s) 857
NmuCI GTSAC 4 cut(s) 86, 160, 286, 865
NsiI ATGCAT 1 cut(s) 841
NspI RCATGY 2 cut(s) 31, 469
PaeR7I CTCGAG 1 cut(s) 1058
PagI TCATGA 1 cut(s) 786
PceI AGGCCT 1 cut(s) 228
PciI ACATGT 2 cut(s) 27, 465
PfeI GAWTC 4 cut(s) 435, 673, 811, 896
PflMI CCANNNNNTGG 1 cut(s) 1089
PfoI TCCNGGA 1 cut(s) 775
PkrI GCNGC 6 cut(s) 121, 616, 847, 856, 910, 1081
PleI GAGTC 3 cut(s) 176, 283, 1069
PmaCI CACGTG 1 cut(s) 726
PmlI CACGTG 1 cut(s) 726
PpsI GAGTC 3 cut(s) 176, 283, 1069
Ppu21I YACGTR 1 cut(s) 726
PpuMI RGGWCCY 1 cut(s) 127
PscI ACATGT 2 cut(s) 27, 465
Psp5II RGGWCCY 1 cut(s) 127
Psp6I CCWGG 3 cut(s) 42, 187, 775
PspCI CACGTG 1 cut(s) 726
PspEI GGTNACC 2 cut(s) 86, 160
PspFI CCCAGC 1 cut(s) 740
PspGI CCWGG 3 cut(s) 42, 187, 775
PspN4I GGNNCC 2 cut(s) 129, 334
PspPI GGNCC 2 cut(s) 40, 127
PspPPI RGGWCCY 1 cut(s) 127
PstI CTGCAG 2 cut(s) 124, 913
PstNI CAGNNNCTG 1 cut(s) 590
PsuI RGATCY 3 cut(s) 731, 991, 1092
PvuII CAGCTG 2 cut(s) 744, 1079
RsaI GTAC 2 cut(s) 473, 944
RsaNI GTAC 2 cut(s) 472, 943
SaqAI TTAA 1 cut(s) 705
SatI GCNGC 6 cut(s) 120, 615, 846, 855, 909, 1080
Sau3AI GATC 4 cut(s) 446, 731, 991, 1092
Sau96I GGNCC 2 cut(s) 40, 127
ScaI AGTACT 1 cut(s) 944
SchI GAGTC 3 cut(s) 176, 283, 1070
ScrFI CCNGG 4 cut(s) 44, 189, 443, 777
SduI GDGCHC 2 cut(s) 522, 1009
SfaNI GCATC 3 cut(s) 571, 826, 848
SfcI CTRYAG 2 cut(s) 120, 909
Sfr274I CTCGAG 1 cut(s) 1058
SinI GGWCC 1 cut(s) 127
SlaI CTCGAG 1 cut(s) 1058
SmlI CTYRAG 1 cut(s) 1058
SmoI CTYRAG 1 cut(s) 1058
Sse9I AATT 3 cut(s) 541, 641, 1087
SseBI AGGCCT 1 cut(s) 228
SsiI CCGC 2 cut(s) 38, 220
SspMI CTAG 2 cut(s) 495, 953
StuI AGGCCT 1 cut(s) 228
StyD4I CCNGG 4 cut(s) 42, 187, 441, 775
StyI CCWWGG 2 cut(s) 223, 805
TaaI ACNGT 4 cut(s) 304, 322, 399, 455
TaiI ACGT 2 cut(s) 66, 728
TaqI TCGA 2 cut(s) 1011, 1059
TasI AATT 3 cut(s) 541, 641, 1087
TatI WGTACW 2 cut(s) 471, 942
TfiI GAWTC 4 cut(s) 435, 673, 811, 896
Tru1I TTAA 1 cut(s) 705
Tru9I TTAA 1 cut(s) 705
TscAI CASTG 3 cut(s) 103, 402, 436
TseFI GTSAC 4 cut(s) 86, 160, 286, 865
TseI GCWGC 6 cut(s) 119, 614, 845, 854, 908, 1079
Tsp45I GTSAC 4 cut(s) 86, 160, 286, 865
TspDTI ATGAA 5 cut(s) 360, 570, 669, 775, 803
TspGWI ACGGA 2 cut(s) 274, 998
TspRI CASTG 3 cut(s) 103, 402, 436
Van91I CCANNNNNTGG 1 cut(s) 1089
VpaK11BI GGWCC 1 cut(s) 127
XapI RAATTY 1 cut(s) 641
XceI RCATGY 2 cut(s) 31, 469
XhoI CTCGAG 1 cut(s) 1058
XspI CTAG 2 cut(s) 495, 953
ZrmI AGTACT 1 cut(s) 944
Zsp2I ATGCAT 1 cut(s) 841
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.