Rh2CG476800

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000917
Physical Location & Seq
Reverse (-)
64242113 .. 64251386
9274 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG476800.1

Sequence Viewer

Length: 936 bp
ATGGCTATATCTACCTCTGTTCTCATCGTGAAGAAACATTGGGCGCGAATAACAGACGACTGCTGCTCTAGGTTTCCTCCAGTACTGAACAAGGTTGCAGTCATTCAACTGGGACGGTGGCAAGGATTGCCTATGCATCACATTGAAGTGGAGGATGAAGCATTCTTAAGGGGTTTGGGAGGTCATCAGAATAAGCACTTGAAATATCTGAGCCTTCGAGGAATATCACAAATTACCGAACTACCTTATTGTATCTTTAATATCACCAGCCTTGAAATTCTGGATCTGAGAGCACGTCACAACTTAGAGACATTGCCTGAAGATATCTCACCAGTCAGGAAGCTCACCCATTTTGACATATCCGAGTGTTACTTGCTAGACCGCATGCCGAAAGGGATTGACAAACTTTCATACCTCCAAGTACTCAATGGTTATGTGAATGGAGATTTAAAAGGAACTCCATGCAGAATTGGCGATTTTGCCCAGTTGAATAAGCTAAGGCGCCTCAGTATACATATTGGGAATGAGGCTGTAGTTCGACAAGGGGAGTTCAGCGAGCTGAAGGACATCTCATCTCTTCGCCACCTAAAAATATCATGGGGAGTCGTTGCTCCAAATTCAAAAGCAAAAGTAGCCTTCCAATCCTTGGAGTTCTCATTTCCTCCGTATCTAGAAAAATTGTCTCTTCAAGGCATCCCTCTAGCACAAGTACCAGAATGGTTGAACCCTAGCCAGTTCAAAAACTTAAAGAAGCTCTACATAAGCGGCGGAGAGTTTGATACGTTGGATCACGGGGAGACTGACTGCAAGTGGACAGTGGAAATCTTGCGTCTCAAGTACTTGAGTAATATCGAAAAGAGTTTGCCCGAGTTGAAGGAAGAGTTTCCTTGGCTGCGCTACTCGGAGGTTGGAGAGAAGCGAAAAAGTTATACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

311

Amino Acids

35.67

Weight (kDa)

8.61

Isoelectric Point (pI)

49.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 65 - 255 1.1e-24 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 160 - 256 1e-06 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 501
AccB7I CCANNNNNTGG 1 cut(s) 646
AccI GTMKAC 1 cut(s) 511
AccII CGCG 1 cut(s) 46
AciI CCGC 3 cut(s) 382, 765, 768
AclWI GGATC 2 cut(s) 291, 795
AcsI RAATTY 2 cut(s) 276, 616
AcuI CTGAAG 2 cut(s) 339, 581
AcyI GRCGYC 1 cut(s) 502
AfaI GTAC 4 cut(s) 84, 423, 711, 839
AfiI CCNNNNNNNGG 1 cut(s) 646
AflII CTTAAG 1 cut(s) 166
AjiI CACGTC 1 cut(s) 296
AluBI AGCT 4 cut(s) 343, 496, 559, 754
AluI AGCT 4 cut(s) 343, 496, 559, 754
Alw21I GWGCWC 1 cut(s) 295
Alw26I GTCTC 4 cut(s) 302, 687, 791, 836
AlwI GGATC 2 cut(s) 291, 795
Ama87I CYCGRG 1 cut(s) 866
ApeKI GCWGC 2 cut(s) 63, 892
ApoI RAATTY 2 cut(s) 276, 616
Asp700I GAANNNNTTC 1 cut(s) 882
AspLEI GCGC 3 cut(s) 46, 504, 897
AsuHPI GGTGA 3 cut(s) 256, 321, 337
AvaI CYCGRG 1 cut(s) 866
BanI GGYRCC 1 cut(s) 501
Bbv12I GWGCWC 1 cut(s) 295
BbvI GCAGC 2 cut(s) 50, 879
BcoDI GTCTC 4 cut(s) 302, 687, 791, 836
BfaI CTAG 5 cut(s) 69, 377, 671, 701, 729
BfmI CTRYAG 1 cut(s) 531
BfoI RGCGCY 1 cut(s) 505
BfrI CTTAAG 1 cut(s) 166
BisI GCNGC 3 cut(s) 64, 766, 893
BlsI GCNGC 3 cut(s) 65, 767, 894
BmcAI AGTACT 3 cut(s) 84, 423, 839
BmeT110I CYCGRG 1 cut(s) 866
BmgBI CACGTC 1 cut(s) 296
BmiI GGNNCC 1 cut(s) 503
BmrI ACTGGG 2 cut(s) 119, 478
BmsI GCATC 2 cut(s) 145, 702
BmuI ACTGGG 2 cut(s) 119, 478
BpmI CTGGAG 1 cut(s) 63
Bpu10I CCTNAGC 1 cut(s) 497
BpuEI CTTGAG 2 cut(s) 818, 862
BsaHI GRCGYC 1 cut(s) 502
BsaJI CCNNGG 2 cut(s) 645, 887
Bsc4I CCNNNNNNNGG 1 cut(s) 646
Bse1I ACTGG 5 cut(s) 80, 114, 332, 484, 733
Bse3DI GCAATG 1 cut(s) 311
BseDI CCNNGG 2 cut(s) 645, 887
BseGI GGATG 2 cut(s) 160, 693
BseLI CCNNNNNNNGG 1 cut(s) 646
BseMI GCAATG 1 cut(s) 311
BseMII CTCAG 3 cut(s) 200, 278, 520
BseNI ACTGG 5 cut(s) 80, 114, 332, 484, 733
BseXI GCAGC 2 cut(s) 50, 879
Bsh1236I CGCG 1 cut(s) 46
BshNI GGYRCC 1 cut(s) 501
BsiHKAI GWGCWC 1 cut(s) 295
BsiHKCI CYCGRG 1 cut(s) 866
BslFI GGGAC 1 cut(s) 126
BslI CCNNNNNNNGG 1 cut(s) 646
BsmAI GTCTC 4 cut(s) 302, 687, 791, 836
BsmBI CGTCTC 1 cut(s) 836
BsmFI GGGAC 1 cut(s) 126
BsmI GAATGC 1 cut(s) 161
BsoBI CYCGRG 1 cut(s) 866
Bsp1286I GDGCHC 1 cut(s) 295
Bsp143I GATC 2 cut(s) 283, 787
BspACI CCGC 3 cut(s) 382, 765, 768
BspCNI CTCAG 3 cut(s) 201, 279, 519
BspFNI CGCG 1 cut(s) 46
BspLI GGNNCC 1 cut(s) 503
BspPI GGATC 2 cut(s) 291, 795
BspT107I GGYRCC 1 cut(s) 501
BspTI CTTAAG 1 cut(s) 166
BsrDI GCAATG 1 cut(s) 311
BsrI ACTGG 5 cut(s) 80, 114, 332, 484, 733
BssECI CCNNGG 2 cut(s) 645, 887
BssMI GATC 2 cut(s) 283, 787
BssNAI GTATAC 1 cut(s) 512
BssNI GRCGYC 1 cut(s) 502
BssT1I CCWWGG 2 cut(s) 645, 887
Bst1107I GTATAC 1 cut(s) 512
Bst4CI ACNGT 2 cut(s) 117, 817
Bst6I CTCTTC 3 cut(s) 582, 690, 873
BstACI GRCGYC 1 cut(s) 502
BstAFI CTTAAG 1 cut(s) 166
BstAPI GCANNNNNTGC 1 cut(s) 127
BstC8I GCNNGC 2 cut(s) 386, 557
BstDEI CTNAG 5 cut(s) 209, 287, 304, 497, 506
BstF5I GGATG 2 cut(s) 160, 693
BstFNI CGCG 1 cut(s) 46
BstH2I RGCGCY 1 cut(s) 505
BstHHI GCGC 3 cut(s) 46, 504, 897
BstKTI GATC 2 cut(s) 286, 790
BstMAI GTCTC 4 cut(s) 302, 687, 791, 836
BstMBI GATC 2 cut(s) 283, 787
BstMWI GCNNNNNNNGC 3 cut(s) 127, 471, 632
BstNSI RCATGY 1 cut(s) 388
BstSFI CTRYAG 1 cut(s) 531
BstUI CGCG 1 cut(s) 46
BstV1I GCAGC 2 cut(s) 50, 879
BstX2I RGATCY 1 cut(s) 283
BstYI RGATCY 1 cut(s) 283
BstZ17I GTATAC 1 cut(s) 512
BtrI CACGTC 1 cut(s) 296
BtsCI GGATG 2 cut(s) 160, 693
BtsIMutI CAGTG 1 cut(s) 822
Cac8I GCNNGC 2 cut(s) 386, 557
CfoI GCGC 3 cut(s) 46, 504, 897
CseI GACGC 1 cut(s) 818
Csp6I GTAC 4 cut(s) 83, 422, 710, 838
CviAII CATG 3 cut(s) 385, 462, 597
CviQI GTAC 4 cut(s) 83, 422, 710, 838
DdeI CTNAG 5 cut(s) 209, 287, 304, 497, 506
DinI GGCGCC 1 cut(s) 503
DpnI GATC 2 cut(s) 285, 789
DpnII GATC 2 cut(s) 283, 787
DraI TTTAAA 1 cut(s) 450
Eam1104I CTCTTC 3 cut(s) 582, 690, 873
EarI CTCTTC 3 cut(s) 582, 690, 873
EciI GGCGGA 1 cut(s) 783
Eco130I CCWWGG 2 cut(s) 645, 887
Eco32I GATATC 1 cut(s) 325
Eco57I CTGAAG 2 cut(s) 339, 581
Eco88I CYCGRG 1 cut(s) 866
EcoRV GATATC 1 cut(s) 325
EcoT14I CCWWGG 2 cut(s) 645, 887
EcoT22I ATGCAT 1 cut(s) 138
EgeI GGCGCC 1 cut(s) 503
EheI GGCGCC 1 cut(s) 503
ErhI CCWWGG 2 cut(s) 645, 887
Esp3I CGTCTC 1 cut(s) 836
FaeI CATG 3 cut(s) 388, 465, 600
FaqI GGGAC 1 cut(s) 126
FatI CATG 3 cut(s) 384, 461, 596
FblI GTMKAC 1 cut(s) 511
Fnu4HI GCNGC 3 cut(s) 64, 766, 893
FokI GGATG 2 cut(s) 167, 680
Fsp4HI GCNGC 3 cut(s) 64, 766, 893
FspBI CTAG 5 cut(s) 69, 377, 671, 701, 729
GlaI GCGC 3 cut(s) 45, 503, 896
GluI GCNGC 3 cut(s) 64, 766, 893
GsuI CTGGAG 1 cut(s) 63
HaeII RGCGCY 1 cut(s) 505
HgaI GACGC 1 cut(s) 818
HhaI GCGC 3 cut(s) 46, 504, 897
Hin1I GRCGYC 1 cut(s) 502
Hin1II CATG 3 cut(s) 388, 465, 600
Hin6I GCGC 3 cut(s) 44, 502, 895
HinP1I GCGC 3 cut(s) 44, 502, 895
HinfI GANTC 1 cut(s) 603
HphI GGTGA 3 cut(s) 256, 321, 337
Hpy166II GTNNAC 2 cut(s) 512, 813
Hpy188I TCNGA 5 cut(s) 189, 210, 288, 364, 904
Hpy188III TCNNGA 4 cut(s) 28, 281, 337, 671
Hpy8I GTNNAC 2 cut(s) 512, 813
HpyAV CCTTC 4 cut(s) 224, 556, 646, 868
HpyCH4III ACNGT 2 cut(s) 117, 817
HpyCH4IV ACGT 2 cut(s) 295, 782
HpyCH4V TGCA 4 cut(s) 98, 136, 465, 807
HpyF10VI GCNNNNNNNGC 3 cut(s) 127, 471, 632
HpyF3I CTNAG 5 cut(s) 209, 287, 304, 497, 506
HpySE526I ACGT 2 cut(s) 295, 782
Hsp92I GRCGYC 1 cut(s) 502
Hsp92II CATG 3 cut(s) 388, 465, 600
HspAI GCGC 3 cut(s) 44, 502, 895
KasI GGCGCC 1 cut(s) 501
Kzo9I GATC 2 cut(s) 283, 787
LmnI GCTCC 1 cut(s) 616
Lsp1109I GCAGC 2 cut(s) 50, 879
LweI GCATC 2 cut(s) 145, 702
MaeI CTAG 5 cut(s) 69, 377, 671, 701, 729
MaeII ACGT 2 cut(s) 295, 782
MaeIII GTNAC 2 cut(s) 296, 368
MalI GATC 2 cut(s) 285, 789
MboI GATC 2 cut(s) 283, 787
MboII GAAGA 5 cut(s) 43, 332, 569, 677, 890
MflI RGATCY 1 cut(s) 283
MhlI GDGCHC 1 cut(s) 295
MluCI AATT 5 cut(s) 231, 276, 468, 616, 677
Mly113I GGCGCC 1 cut(s) 502
MlyI GAGTC 1 cut(s) 612
MmeI TCCRAC 2 cut(s) 765, 889
Mph1103I ATGCAT 1 cut(s) 138
MroXI GAANNNNTTC 1 cut(s) 882
MseI TTAA 4 cut(s) 167, 258, 449, 746
MslI CAYNNNNRTG 1 cut(s) 146
MspCI CTTAAG 1 cut(s) 166
Mva1269I GAATGC 1 cut(s) 161
MvnI CGCG 1 cut(s) 46
MwoI GCNNNNNNNGC 3 cut(s) 127, 471, 632
NarI GGCGCC 1 cut(s) 502
NdeII GATC 2 cut(s) 283, 787
NlaIII CATG 3 cut(s) 388, 465, 600
NlaIV GGNNCC 1 cut(s) 503
NmuCI GTSAC 1 cut(s) 296
NsiI ATGCAT 1 cut(s) 138
NspI RCATGY 1 cut(s) 388
PaeI GCATGC 1 cut(s) 388
PctI GAATGC 1 cut(s) 161
PdmI GAANNNNTTC 1 cut(s) 882
PflMI CCANNNNNTGG 1 cut(s) 646
PkrI GCNGC 3 cut(s) 65, 767, 894
PleI GAGTC 1 cut(s) 611
PluTI GGCGCC 1 cut(s) 505
PpsI GAGTC 1 cut(s) 611
PspN4I GGNNCC 1 cut(s) 503
PsuI RGATCY 1 cut(s) 283
RsaI GTAC 4 cut(s) 84, 423, 711, 839
RsaNI GTAC 4 cut(s) 83, 422, 710, 838
RseI CAYNNNNRTG 1 cut(s) 146
SaqAI TTAA 4 cut(s) 167, 258, 449, 746
SatI GCNGC 3 cut(s) 64, 766, 893
Sau3AI GATC 2 cut(s) 283, 787
ScaI AGTACT 3 cut(s) 84, 423, 839
SchI GAGTC 1 cut(s) 612
SduI GDGCHC 1 cut(s) 295
SfaNI GCATC 2 cut(s) 145, 702
SfcI CTRYAG 1 cut(s) 531
SfoI GGCGCC 1 cut(s) 503
SmiMI CAYNNNNRTG 1 cut(s) 146
SmlI CTYRAG 3 cut(s) 166, 833, 841
SmoI CTYRAG 3 cut(s) 166, 833, 841
SphI GCATGC 1 cut(s) 388
Sse9I AATT 5 cut(s) 231, 276, 468, 616, 677
SsiI CCGC 3 cut(s) 382, 765, 768
SspDI GGCGCC 1 cut(s) 501
SspMI CTAG 5 cut(s) 69, 377, 671, 701, 729
StyI CCWWGG 2 cut(s) 645, 887
TaaI ACNGT 2 cut(s) 117, 817
TaiI ACGT 2 cut(s) 298, 785
TaqI TCGA 3 cut(s) 217, 538, 852
TasI AATT 5 cut(s) 231, 276, 468, 616, 677
TatI WGTACW 3 cut(s) 82, 421, 837
TauI GCSGC 1 cut(s) 768
Tru1I TTAA 4 cut(s) 167, 258, 449, 746
Tru9I TTAA 4 cut(s) 167, 258, 449, 746
TscAI CASTG 1 cut(s) 822
TseFI GTSAC 1 cut(s) 296
TseI GCWGC 2 cut(s) 63, 892
Tsp45I GTSAC 1 cut(s) 296
TspDTI ATGAA 2 cut(s) 171, 399
TspGWI ACGGA 1 cut(s) 654
TspRI CASTG 1 cut(s) 822
Van91I CCANNNNNTGG 1 cut(s) 646
Vha464I CTTAAG 1 cut(s) 166
XapI RAATTY 2 cut(s) 276, 616
XbaI TCTAGA 1 cut(s) 670
XceI RCATGY 1 cut(s) 388
XcmI CCANNNNNNNNNTGG 1 cut(s) 425
XmiI GTMKAC 1 cut(s) 511
XmnI GAANNNNTTC 1 cut(s) 882
XspI CTAG 5 cut(s) 69, 377, 671, 701, 729
ZrmI AGTACT 3 cut(s) 84, 423, 839
Zsp2I ATGCAT 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.