Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001687.1

Orthogroup ID

OG0000917

Physical Location & Seq

Genomic Coordinates Forward (+)

85152 .. 86216

Gene Structure 1065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001687.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

atgttaatctccttggctagagaggctaagctgttcgacttcgatcccaaatggccaatgatgccatttggttctatatcaacttgtaggcgttcatgtttagtttctaaggagggtaagtcaataactcctcacggtgatgatcaattgaaaaatctattgacagtactcaatgtaaacgttaaatatcttgatttgaaacaagaatggctcgacaagttgaagagggttgaagttcttcactttgggcggtggcagagctcccctaaatatcacattgaagtggatcagaaaacatttgatggttcacaagctgtatcgtttctaaatggtttgggagctcagaaacacttgaagtatcttagcctcagaggaatatcaagaattagtgaactccctgcttctattcgtagtcttatcagccttgaaattctcgatctgagagcatgccatgacttggagaggttgccttcagacatctcatcattgaagaagctcacgcatttggatgtatcagagtgttacttactagaaggcatgcccaaagggcttcacaaactttcttccctgcaagtactaaaaggttttctgataggatcacaggaaaaaactcccaccaaacttggtgaacttgcgacattgaagaagctaaggaggctcagcatacacattgggaatggggctgcaattcaagcagtggagttcaaaaagttgaaagatatgtcatctcttcgcttcctcaaggtatcatggggagtggtttctaaaaatttgacagagggtattgaagatgagccctcgaaattcttgtttccagagaatttagaaaaattggatcttcaaggctttcccctagcacatgcaccagaagggttgaagcctagcaaactgaaaaatttaaagaagctctatataaggggtggggaacttgagagcttggatcatggggaaaatgagccatggaaagtggaaatcttgcgtctcgagtacttgaagaagttcaaaaacgcagacgaagaagtgaggagaaattttcctcatcggaagtactggacagtcgaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

354

Amino Acids

40.45

Weight (kDa)

9.34

Isoelectric Point (pI)

47.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000917)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g29201 FvH4_6g29201 FvH4_6g29201
malus_domestica	MD09G1222600.v1.1
prunus_persica	Prupe.3G175600_v2.0.a1 Prupe.3G175600_v2.0.a1 Prupe.3G176100_v2.0.a1 Prupe.4G057900_v2.0.a1
pyrus_communis	pycom808g00780
rosa_chinensis	RchiOBHm_Chr2g0111461 RchiOBHm_Chr2g0112821 RchiOBHm_Chr2g0151861 RchiOBHm_Chr2g0152221
rosa_laevigata	RLG00000018013 RLG00000018014 RLG00000020584 RLG00000020617
rosa_multiflora	Rmu_co8270923.1_g000001 Rmu_sc0001687.1_g000009 Rmu_sc0002351.1_g000014 Rmu_sc0003043.1_g000010 Rmu_sc0004286.1_g000015 Rmu_sc0005294.1_g000017 Rmu_sc0005791.1_g000005 Rmu_sc0006226.1_g000001 Rmu_sc0008578.1_g000006 Rmu_sc0017895.1_g000007 Rmu_sc0023925.1_g000005 Rmu_ssc0000400.1_g000039
rosa_roxburghii	Rroxscaffold_2G00096130 Rroxscaffold_2G00131120 Rroxscaffold_4G00302580 Rroxscaffold_7G00189350
rosa_rugosa	Rorug02G0174500 Rorug02G0182800 Rorug02G0429200 Rorug02G0429600.1 Rorug02G0431300 Rorug02G0431400 Rorug02G0431500
rosa_samantha	Rh2AG227200 Rh2AG237600 Rh2AG490200 Rh2AG490400 Rh2AG492800 Rh2BG239000 Rh2BG250300 Rh2BG502600 Rh2BG505400 Rh2CG230800 Rh2CG241400 Rh2CG476500 Rh2CG476800 Rh2CG479200 Rh2DG234800 Rh2DG245100 Rh2DG513800 Rh2DG516600
rosa_wichuraiana	Rw0G018020 Rw0G020240 Rw2G018600 Rw2G040180 Rw2G040300 Rw2G040500 Rw2G040520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	457
AciI	CCGC	1 cut(s)	250
AclI	AACGTT	1 cut(s)	180
AclWI	GGATC	5 cut(s)	38, 294, 604, 843, 948
AcoI	YGGCCR	1 cut(s)	53
AcsI	RAATTY	6 cut(s)	429, 769, 803, 820, 895, 1030
AcuI	CTGAAG	1 cut(s)	456
AfaI	GTAC	4 cut(s)	168, 576, 989, 1049
AfiI	CCNNNNNNNGG	1 cut(s)	457
AluBI	AGCT	8 cut(s)	31, 261, 314, 341, 496, 649, 907, 936
AluI	AGCT	8 cut(s)	31, 261, 314, 341, 496, 649, 907, 936
Alw21I	GWGCWC	2 cut(s)	263, 343
Alw26I	GTCTC	1 cut(s)	986
AlwI	GGATC	5 cut(s)	38, 294, 604, 843, 948
Ama87I	CYCGRG	1 cut(s)	983
AoxI	GGCC	1 cut(s)	53
ApeKI	GCWGC	1 cut(s)	683
ApoI	RAATTY	6 cut(s)	429, 769, 803, 820, 895, 1030
Asp700I	GAANNNNTTC	2 cut(s)	237, 998
AsuHPI	GGTGA	2 cut(s)	149, 638
AvaI	CYCGRG	1 cut(s)	983
BalI	TGGCCA	1 cut(s)	55
BanII	GRGCYC	3 cut(s)	263, 343, 798
Bbv12I	GWGCWC	2 cut(s)	263, 343
BbvI	GCAGC	1 cut(s)	670
BccI	CCATC	1 cut(s)	296
BclI	TGATCA	1 cut(s)	142
BcoDI	GTCTC	1 cut(s)	986
BfaI	CTAG	4 cut(s)	18, 530, 854, 882
BglI	GCCNNNNNGGC	1 cut(s)	547
BisI	GCNGC	1 cut(s)	684
BlpI	GCTNAGC	2 cut(s)	27, 659
BlsI	GCNGC	1 cut(s)	685
BmcAI	AGTACT	4 cut(s)	168, 576, 989, 1049
BmeT110I	CYCGRG	1 cut(s)	983
BmsI	GCATC	1 cut(s)	51
Bpu10I	CCTNAGC	1 cut(s)	650
Bpu1102I	GCTNAGC	2 cut(s)	27, 659
BpuEI	CTTGAG	2 cut(s)	725, 950
BsaJI	CCNNGG	2 cut(s)	12, 959
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bsc4I	CCNNNNNNNGG	1 cut(s)	457
Bse1I	ACTGG	1 cut(s)	1055
BseDI	CCNNGG	2 cut(s)	12, 959
BseGI	GGATG	1 cut(s)	514
BseLI	CCNNNNNNNGG	1 cut(s)	457
BseMII	CTCAG	4 cut(s)	356, 382, 431, 673
BseNI	ACTGG	1 cut(s)	1055
BseRI	GAGGAG	2 cut(s)	120, 1039
BseXI	GCAGC	1 cut(s)	670
BshFI	GGCC	1 cut(s)	55
BsiHKAI	GWGCWC	2 cut(s)	263, 343
BsiHKCI	CYCGRG	1 cut(s)	983
BslI	CCNNNNNNNGG	1 cut(s)	457
BsmAI	GTCTC	1 cut(s)	986
BsmBI	CGTCTC	1 cut(s)	986
BsnI	GGCC	1 cut(s)	55
BsoBI	CYCGRG	1 cut(s)	983
Bsp1286I	GDGCHC	3 cut(s)	263, 343, 798
Bsp143I	GATC	7 cut(s)	43, 142, 286, 436, 596, 835, 940
Bsp1720I	GCTNAGC	2 cut(s)	27, 659
Bsp19I	CCATGG	1 cut(s)	959
BspACI	CCGC	1 cut(s)	250
BspANI	GGCC	1 cut(s)	55
BspCNI	CTCAG	4 cut(s)	355, 381, 432, 672
BspPI	GGATC	5 cut(s)	38, 294, 604, 843, 948
BsrI	ACTGG	1 cut(s)	1055
BssECI	CCNNGG	2 cut(s)	12, 959
BssMI	GATC	7 cut(s)	43, 142, 286, 436, 596, 835, 940
BssT1I	CCWWGG	2 cut(s)	12, 959
Bst4CI	ACNGT	3 cut(s)	137, 166, 1057
Bst6I	CTCTTC	2 cut(s)	218, 735
BstC8I	GCNNGC	2 cut(s)	448, 539
BstDEI	CTNAG	8 cut(s)	27, 108, 342, 362, 368, 440, 650, 659
BstDSI	CCRYGG	1 cut(s)	959
BstF5I	GGATG	1 cut(s)	514
BstKTI	GATC	7 cut(s)	46, 145, 289, 439, 599, 838, 943
BstMAI	GTCTC	1 cut(s)	986
BstMBI	GATC	7 cut(s)	43, 142, 286, 436, 596, 835, 940
BstMWI	GCNNNNNNNGC	5 cut(s)	23, 61, 547, 655, 692
BstNSI	RCATGY	3 cut(s)	450, 541, 863
BstV1I	GCAGC	1 cut(s)	670
BstX2I	RGATCY	1 cut(s)	835
BstYI	RGATCY	1 cut(s)	835
BsuRI	GGCC	1 cut(s)	55
BtgI	CCRYGG	1 cut(s)	959
BtsCI	GGATG	1 cut(s)	514
BtsI	GCAGTG	1 cut(s)	702
BtsIMutI	CAGTG	1 cut(s)	702
Cac8I	GCNNGC	2 cut(s)	448, 539
CseI	GACGC	1 cut(s)	968
Csp6I	GTAC	4 cut(s)	167, 575, 988, 1048
CspCI	CAANNNNNGTGG	2 cut(s)	604, 639
CviAII	CATG	8 cut(s)	96, 447, 452, 538, 750, 860, 944, 960
CviQI	GTAC	4 cut(s)	167, 575, 988, 1048
DdeI	CTNAG	8 cut(s)	27, 108, 342, 362, 368, 440, 650, 659
DpnI	GATC	7 cut(s)	45, 144, 288, 438, 598, 837, 942
DpnII	GATC	7 cut(s)	43, 142, 286, 436, 596, 835, 940
DraI	TTTAAA	1 cut(s)	900
EaeI	YGGCCR	1 cut(s)	53
Eam1104I	CTCTTC	2 cut(s)	218, 735
EarI	CTCTTC	2 cut(s)	218, 735
Ecl136II	GAGCTC	2 cut(s)	261, 341
Eco130I	CCWWGG	2 cut(s)	12, 959
Eco24I	GRGCYC	3 cut(s)	263, 343, 798
Eco53kI	GAGCTC	2 cut(s)	261, 341
Eco57I	CTGAAG	1 cut(s)	456
Eco88I	CYCGRG	1 cut(s)	983
EcoICRI	GAGCTC	2 cut(s)	261, 341
EcoT14I	CCWWGG	2 cut(s)	12, 959
EcoT38I	GRGCYC	3 cut(s)	263, 343, 798
ErhI	CCWWGG	2 cut(s)	12, 959
Esp3I	CGTCTC	1 cut(s)	986
FaeI	CATG	8 cut(s)	99, 450, 455, 541, 753, 863, 947, 963
FatI	CATG	8 cut(s)	95, 446, 451, 537, 749, 859, 943, 959
FbaI	TGATCA	1 cut(s)	142
Fnu4HI	GCNGC	1 cut(s)	684
FokI	GGATG	1 cut(s)	521
FriOI	GRGCYC	3 cut(s)	263, 343, 798
Fsp4HI	GCNGC	1 cut(s)	684
FspBI	CTAG	4 cut(s)	18, 530, 854, 882
GluI	GCNGC	1 cut(s)	684
HaeIII	GGCC	1 cut(s)	55
HgaI	GACGC	1 cut(s)	968
Hin1II	CATG	8 cut(s)	99, 450, 455, 541, 753, 863, 947, 963
HphI	GGTGA	2 cut(s)	149, 638
Hpy166II	GTNNAC	4 cut(s)	178, 308, 392, 629
Hpy188I	TCNGA	8 cut(s)	291, 345, 371, 441, 475, 517, 591, 1044
Hpy188III	TCNNGA	5 cut(s)	191, 381, 434, 815, 983
Hpy8I	GTNNAC	4 cut(s)	178, 308, 392, 629
HpyAV	CCTTC	3 cut(s)	480, 527, 863
HpyCH4III	ACNGT	3 cut(s)	137, 166, 1057
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	3 cut(s)	571, 686, 863
HpyF10VI	GCNNNNNNNGC	5 cut(s)	23, 61, 547, 655, 692
HpyF3I	CTNAG	8 cut(s)	27, 108, 342, 362, 368, 440, 650, 659
HpySE526I	ACGT	1 cut(s)	180
Hsp92II	CATG	8 cut(s)	99, 450, 455, 541, 753, 863, 947, 963
Ksp22I	TGATCA	1 cut(s)	142
Kzo9I	GATC	7 cut(s)	43, 142, 286, 436, 596, 835, 940
LmnI	GCTCC	2 cut(s)	266, 338
LpnPI	CCDG	6 cut(s)	411, 581, 587, 828, 879, 1036
Lsp1109I	GCAGC	1 cut(s)	670
LweI	GCATC	1 cut(s)	51
MaeI	CTAG	4 cut(s)	18, 530, 854, 882
MaeII	ACGT	1 cut(s)	180
MaeIII	GTNAC	1 cut(s)	521
MalI	GATC	7 cut(s)	45, 144, 288, 438, 598, 837, 942
MboI	GATC	7 cut(s)	43, 142, 286, 436, 596, 835, 940
MfeI	CAATTG	1 cut(s)	146
MflI	RGATCY	1 cut(s)	835
MhlI	GDGCHC	3 cut(s)	263, 343, 798
MlsI	TGGCCA	1 cut(s)	55
MluNI	TGGCCA	1 cut(s)	55
Mox20I	TGGCCA	1 cut(s)	55
MroXI	GAANNNNTTC	2 cut(s)	237, 998
MscI	TGGCCA	1 cut(s)	55
MseI	TTAA	3 cut(s)	5, 183, 899
MslI	CAYNNNNRTG	3 cut(s)	138, 281, 507
Msp20I	TGGCCA	1 cut(s)	55
MunI	CAATTG	1 cut(s)	146
MwoI	GCNNNNNNNGC	5 cut(s)	23, 61, 547, 655, 692
NcoI	CCATGG	1 cut(s)	959
NdeII	GATC	7 cut(s)	43, 142, 286, 436, 596, 835, 940
NlaIII	CATG	8 cut(s)	99, 450, 455, 541, 753, 863, 947, 963
NspI	RCATGY	3 cut(s)	450, 541, 863
PaeI	GCATGC	2 cut(s)	450, 541
PaeR7I	CTCGAG	1 cut(s)	983
PdmI	GAANNNNTTC	2 cut(s)	237, 998
PflMI	CCANNNNNTGG	1 cut(s)	457
PkrI	GCNGC	1 cut(s)	685
Psp124BI	GAGCTC	2 cut(s)	263, 343
Psp1406I	AACGTT	1 cut(s)	180
PsuI	RGATCY	1 cut(s)	835
RsaI	GTAC	4 cut(s)	168, 576, 989, 1049
RsaNI	GTAC	4 cut(s)	167, 575, 988, 1048
RseI	CAYNNNNRTG	3 cut(s)	138, 281, 507
SacI	GAGCTC	2 cut(s)	263, 343
SaqAI	TTAA	3 cut(s)	5, 183, 899
SatI	GCNGC	1 cut(s)	684
Sau3AI	GATC	7 cut(s)	43, 142, 286, 436, 596, 835, 940
ScaI	AGTACT	4 cut(s)	168, 576, 989, 1049
SduI	GDGCHC	3 cut(s)	263, 343, 798
SfaNI	GCATC	1 cut(s)	51
Sfr274I	CTCGAG	1 cut(s)	983
SlaI	CTCGAG	1 cut(s)	983
SmiMI	CAYNNNNRTG	3 cut(s)	138, 281, 507
SmlI	CTYRAG	3 cut(s)	740, 929, 983
SmoI	CTYRAG	3 cut(s)	740, 929, 983
SphI	GCATGC	2 cut(s)	450, 541
SsiI	CCGC	1 cut(s)	250
SspMI	CTAG	4 cut(s)	18, 530, 854, 882
SstI	GAGCTC	2 cut(s)	263, 343
StyI	CCWWGG	2 cut(s)	12, 959
TaaI	ACNGT	3 cut(s)	137, 166, 1057
TaiI	ACGT	1 cut(s)	183
TaqI	TCGA	7 cut(s)	36, 42, 213, 435, 800, 984, 1059
TatI	WGTACW	4 cut(s)	166, 574, 987, 1047
Tru1I	TTAA	3 cut(s)	5, 183, 899
Tru9I	TTAA	3 cut(s)	5, 183, 899
TscAI	CASTG	1 cut(s)	702
TseI	GCWGC	1 cut(s)	683
TspDTI	ATGAA	1 cut(s)	84
TspRI	CASTG	1 cut(s)	702
Van91I	CCANNNNNTGG	1 cut(s)	457
XapI	RAATTY	6 cut(s)	429, 769, 803, 820, 895, 1030
XceI	RCATGY	3 cut(s)	450, 541, 863
XhoI	CTCGAG	1 cut(s)	983
XmnI	GAANNNNTTC	2 cut(s)	237, 998
XspI	CTAG	4 cut(s)	18, 530, 854, 882
ZrmI	AGTACT	4 cut(s)	168, 576, 989, 1049

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.