RLG00000018013

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000917
Physical Location & Seq
Forward (+)
24423546 .. 24425036
1491 bp
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UTR
Exon/CDS
Intron
RLM00000018013

Sequence Viewer

Length: 1491 bp
ATGGCAAATATCGTGGTGGAGTTGATGGATGAGGAAATATCACAAGATCAGGATGAGGAAATATCACAAGATCAGCCGAAACTCAGCGCGGAGGCAATTTTCGATAAAAGTGAGGCCATGGCCAACATAAGGAGGAGTTATGGAGATCTTCGGGGCACGGAGTTGAAGGTCTGTCTTCTTTCTTTCTCAATCTTCCCCGAGGAATCTGAGATAAGAAAGAGGCCTCTAATTTACTGGTGGATCGGCGAGGGCTTCATAACGGCTACCAAAGAGAAGACAGCAGAGGAGATAGGAGAAGACATCTTTGCAAAACTCTTGAGAAAGGACTTGATTCAACCAGCTACAGGTGAGTCCAACTGCGAATTACTTGTCAAAAATTGTTGTGTTCACCCTTGGATTCGTCGCATGTTGATCTCCTTGGCTAGAGAGGCTAAGCTGTTCGAATTCGATCCCAAATGGCCAATGATGGCATCTGATTCTATATTGACTTGTAGGCGTTCATGTTTAGTTTCTAAGGAGGATATGTCAATAACTCCTCAGGCTGATGATCAGTTGAAAAATCTGTTGACAGTATTCAATGTAAACGTTCAATATCTTAATTTGAAACAAGAATGGCTCGACAAGTTGAAGAGGGTTGAAGTTCTTCACTTTGGACGGTGGCGGAGCGACCCCAAATATCACATTGAAGTGGATCAGAAAACATTTGATGGTTCACAAGCTGTATCGTTTCTGAATGGTTTGGGAGCTCAGAAGCACTTGAAGTATCTTAGCCTCAGAGGAATATCGAGAATTAGCGAACTCCCTGCTTCTATTCGTAGTCTTATCAGCCTTGAAATTCTCGATCTGAGAGCATGCCATGACTTGGAGAGGTTGCCTTCAGACATCTCATCATTGAAGAAGCTCACGCATTTGGATGTATCAGAGTGTTACTTACTAGAGGGCATGCCCAAAGGGCTTCACAAACTTTCTTCCCTGCAAGTACTTAAAGGTTTTCTGATAGGATCACAGGAAAAAACTCCCACCAAACTTGGTGAACTTGCAACTTTGAAGAAGCTAAGGAGGCTCAGCATACACATTGGGAATGGGGCTGCAATTCAAGCAGGGGATTTCAAAAAGTTGAAAGATATGTCATCTCTTCGCTTCCTGAAAGTATCATGGGGAGTGGTTTCTAAAAATTTGACAGAGGGTATTGACGATGAGCCCTCGAAATTCTTGTTTCCAGAGAATTTAGAAAAATTGGATCTTCAAGGGTTTCCCCTGTCAGATGCACCAGAAGGGTTGAAGCCTAGCAAACTGAAAAATTTAAAGAAGCTCTATATAAGGGGTGGGGAACTTAAGAGCTTGGTTCATGGGGAAAATGAGCAGTGGAAAGTGGAAATCTTCCGTCTCGAGTACTTGAAGAAGTTCATATACTCAGAAGAAGAAGTGAAGAGAATTTTTCCCCATCGGAAGTACTGGACAGTGAAGAACCTCAGTGAAGCTGAAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

497

Amino Acids

56.83

Weight (kDa)

7.57

Isoelectric Point (pI)

51.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_DRP PF23559 64 - 134 2.3e-14 Disease resistance protein Winged helix domain
LRR_R13L1-DRL21 PF25019 200 - 309 9.7e-06 R13L1/DRL21 LRRs
LRR_14 PF23598 244 - 442 5e-28 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 862
AccII CGCG 1 cut(s) 89
AciI CCGC 2 cut(s) 89, 661
AclI AACGTT 1 cut(s) 585
AclWI GGATC 5 cut(s) 248, 443, 699, 1009, 1248
AcoI YGGCCR 2 cut(s) 120, 458
AcsI RAATTY 7 cut(s) 443, 834, 1174, 1208, 1225, 1300, 1434
AcuI CTGAAG 1 cut(s) 861
AfaI GTAC 3 cut(s) 981, 1394, 1454
AfiI CCNNNNNNNGG 3 cut(s) 129, 344, 862
AflII CTTAAG 1 cut(s) 1334
AluBI AGCT 9 cut(s) 341, 436, 719, 746, 901, 1054, 1312, 1341, 1481
AluI AGCT 9 cut(s) 341, 436, 719, 746, 901, 1054, 1312, 1341, 1481
Alw21I GWGCWC 1 cut(s) 748
Alw26I GTCTC 1 cut(s) 1391
AlwI GGATC 5 cut(s) 248, 443, 699, 1009, 1248
Ama87I CYCGRG 2 cut(s) 197, 1388
AoxI GGCC 4 cut(s) 114, 120, 221, 458
ApeKI GCWGC 1 cut(s) 1088
ApoI RAATTY 7 cut(s) 443, 834, 1174, 1208, 1225, 1300, 1434
ArsI GACNNNNNNTTYG 2 cut(s) 354, 386
Asp700I GAANNNNTTC 2 cut(s) 642, 1403
AspLEI GCGC 1 cut(s) 89
AsuHPI GGTGA 3 cut(s) 359, 380, 1043
AsuII TTCGAA 1 cut(s) 441
AvaI CYCGRG 2 cut(s) 197, 1388
AxyI CCTNAGG 1 cut(s) 537
BaeGI GKGCMC 1 cut(s) 158
BalI TGGCCA 2 cut(s) 122, 460
BanII GRGCYC 2 cut(s) 748, 1203
BarI GAAGNNNNNNTAC 2 cut(s) 1394, 1426
BbsI GAAGAC 3 cut(s) 167, 281, 303
Bbv12I GWGCWC 1 cut(s) 748
BbvI GCAGC 1 cut(s) 1075
BccI CCATC 4 cut(s) 19, 460, 701, 1452
BceAI ACGGC 1 cut(s) 276
BcgI CGANNNNNNTGC 2 cut(s) 785, 819
BclI TGATCA 1 cut(s) 547
BcoDI GTCTC 1 cut(s) 1391
BfaI CTAG 4 cut(s) 423, 935, 1287, 1489
BfmI CTRYAG 1 cut(s) 342
BfrI CTTAAG 1 cut(s) 1334
BglI GCCNNNNNGGC 1 cut(s) 952
BglII AGATCT 1 cut(s) 145
BisI GCNGC 1 cut(s) 1089
BlpI GCTNAGC 2 cut(s) 432, 1064
BlsI GCNGC 1 cut(s) 1090
BmcAI AGTACT 3 cut(s) 981, 1394, 1454
BmeT110I CYCGRG 2 cut(s) 197, 1388
BmsI GCATC 2 cut(s) 479, 1255
BpiI GAAGAC 3 cut(s) 167, 281, 303
Bpu10I CCTNAGC 1 cut(s) 1055
Bpu1102I GCTNAGC 2 cut(s) 432, 1064
Bpu14I TTCGAA 1 cut(s) 441
BpuEI CTTGAG 1 cut(s) 337
BsaJI CCNNGG 4 cut(s) 117, 198, 392, 417
BsaXI ACNNNNNCTCC 2 cut(s) 509, 539
Bsc4I CCNNNNNNNGG 3 cut(s) 129, 344, 862
Bse1I ACTGG 2 cut(s) 239, 1460
Bse21I CCTNAGG 1 cut(s) 537
BseDI CCNNGG 4 cut(s) 117, 198, 392, 417
BseGI GGATG 3 cut(s) 34, 58, 919
BseLI CCNNNNNNNGG 3 cut(s) 129, 344, 862
BseMII CTCAG 9 cut(s) 97, 198, 551, 761, 787, 836, 1078, 1428, 1486
BseNI ACTGG 2 cut(s) 239, 1460
BseRI GAGGAG 3 cut(s) 148, 299, 525
BseSI GKGCMC 1 cut(s) 158
BseXI GCAGC 1 cut(s) 1075
Bsh1236I CGCG 1 cut(s) 89
BshFI GGCC 4 cut(s) 116, 122, 223, 460
BsiHKAI GWGCWC 1 cut(s) 748
BsiHKCI CYCGRG 2 cut(s) 197, 1388
BslI CCNNNNNNNGG 3 cut(s) 129, 344, 862
BsmAI GTCTC 1 cut(s) 1391
BsmBI CGTCTC 1 cut(s) 1391
BsnI GGCC 4 cut(s) 116, 122, 223, 460
BsoBI CYCGRG 2 cut(s) 197, 1388
Bsp119I TTCGAA 1 cut(s) 441
Bsp1286I GDGCHC 3 cut(s) 158, 748, 1203
Bsp1720I GCTNAGC 2 cut(s) 432, 1064
Bsp19I CCATGG 1 cut(s) 117
BspACI CCGC 2 cut(s) 89, 661
BspANI GGCC 4 cut(s) 116, 122, 223, 460
BspCNI CTCAG 9 cut(s) 96, 199, 550, 760, 786, 837, 1077, 1427, 1485
BspFNI CGCG 1 cut(s) 89
BspPI GGATC 5 cut(s) 248, 443, 699, 1009, 1248
BspT104I TTCGAA 1 cut(s) 441
BspTI CTTAAG 1 cut(s) 1334
BsrI ACTGG 2 cut(s) 239, 1460
BssECI CCNNGG 4 cut(s) 117, 198, 392, 417
BssT1I CCWWGG 3 cut(s) 117, 392, 417
Bst4CI ACNGT 3 cut(s) 571, 657, 1462
Bst6I CTCTTC 3 cut(s) 623, 1140, 1424
BstAFI CTTAAG 1 cut(s) 1334
BstBI TTCGAA 1 cut(s) 441
BstC8I GCNNGC 2 cut(s) 853, 944
BstDSI CCRYGG 1 cut(s) 117
BstF5I GGATG 3 cut(s) 34, 58, 919
BstFNI CGCG 1 cut(s) 89
BstHHI GCGC 1 cut(s) 89
BstMAI GTCTC 1 cut(s) 1391
BstMWI GCNNNNNNNGC 4 cut(s) 428, 952, 1060, 1097
BstNSI RCATGY 3 cut(s) 409, 855, 946
BstSFI CTRYAG 1 cut(s) 342
BstSLI GKGCMC 1 cut(s) 158
BstUI CGCG 1 cut(s) 89
BstV1I GCAGC 1 cut(s) 1075
BstV2I GAAGAC 3 cut(s) 167, 281, 303
BstX2I RGATCY 2 cut(s) 145, 1240
BstYI RGATCY 2 cut(s) 145, 1240
Bsu36I CCTNAGG 1 cut(s) 537
BsuRI GGCC 4 cut(s) 116, 122, 223, 460
BtgI CCRYGG 1 cut(s) 117
BtsCI GGATG 3 cut(s) 34, 58, 919
BtsI GCAGTG 1 cut(s) 1370
BtsIMutI CAGTG 3 cut(s) 1370, 1467, 1480
Cac8I GCNNGC 2 cut(s) 853, 944
CfoI GCGC 1 cut(s) 89
Csp6I GTAC 3 cut(s) 980, 1393, 1453
CspCI CAANNNNNGTGG 3 cut(s) 29, 1009, 1044
CviAII CATG 8 cut(s) 118, 406, 501, 852, 857, 943, 1155, 1349
CviQI GTAC 3 cut(s) 980, 1393, 1453
DraI TTTAAA 1 cut(s) 1305
EaeI YGGCCR 2 cut(s) 120, 458
Eam1104I CTCTTC 3 cut(s) 623, 1140, 1424
EarI CTCTTC 3 cut(s) 623, 1140, 1424
EciI GGCGGA 1 cut(s) 676
Ecl136II GAGCTC 1 cut(s) 746
Eco130I CCWWGG 3 cut(s) 117, 392, 417
Eco147I AGGCCT 1 cut(s) 223
Eco24I GRGCYC 2 cut(s) 748, 1203
Eco53kI GAGCTC 1 cut(s) 746
Eco57I CTGAAG 1 cut(s) 861
Eco81I CCTNAGG 1 cut(s) 537
Eco88I CYCGRG 2 cut(s) 197, 1388
EcoICRI GAGCTC 1 cut(s) 746
EcoRI GAATTC 1 cut(s) 443
EcoT14I CCWWGG 3 cut(s) 117, 392, 417
EcoT38I GRGCYC 2 cut(s) 748, 1203
ErhI CCWWGG 3 cut(s) 117, 392, 417
Esp3I CGTCTC 1 cut(s) 1391
FaeI CATG 8 cut(s) 121, 409, 504, 855, 860, 946, 1158, 1352
FatI CATG 8 cut(s) 117, 405, 500, 851, 856, 942, 1154, 1348
FbaI TGATCA 1 cut(s) 547
Fnu4HI GCNGC 1 cut(s) 1089
FokI GGATG 3 cut(s) 41, 65, 926
FriOI GRGCYC 2 cut(s) 748, 1203
Fsp4HI GCNGC 1 cut(s) 1089
FspBI CTAG 4 cut(s) 423, 935, 1287, 1489
GlaI GCGC 1 cut(s) 88
GluI GCNGC 1 cut(s) 1089
HaeIII GGCC 4 cut(s) 116, 122, 223, 460
HhaI GCGC 1 cut(s) 89
Hin1II CATG 8 cut(s) 121, 409, 504, 855, 860, 946, 1158, 1352
Hin6I GCGC 1 cut(s) 87
HinP1I GCGC 1 cut(s) 87
HincII GTYRAC 1 cut(s) 567
HindII GTYRAC 1 cut(s) 567
HinfI GANTC 5 cut(s) 203, 331, 350, 397, 476
HphI GGTGA 3 cut(s) 359, 380, 1043
Hpy166II GTNNAC 5 cut(s) 388, 567, 583, 713, 1034
Hpy188III TCNNGA 7 cut(s) 50, 316, 786, 839, 1144, 1220, 1388
Hpy8I GTNNAC 5 cut(s) 388, 567, 583, 713, 1034
Hpy99I CGWCG 1 cut(s) 405
HpyAV CCTTC 4 cut(s) 160, 885, 1268, 1478
HpyCH4III ACNGT 3 cut(s) 571, 657, 1462
HpyCH4IV ACGT 1 cut(s) 585
HpyCH4V TGCA 5 cut(s) 308, 976, 1040, 1091, 1268
HpyF10VI GCNNNNNNNGC 4 cut(s) 428, 952, 1060, 1097
HpySE526I ACGT 1 cut(s) 585
Hsp92II CATG 8 cut(s) 121, 409, 504, 855, 860, 946, 1158, 1352
HspAI GCGC 1 cut(s) 87
Ksp22I TGATCA 1 cut(s) 547
LmnI GCTCC 2 cut(s) 663, 743
Lsp1109I GCAGC 1 cut(s) 1075
LweI GCATC 2 cut(s) 479, 1255
MaeI CTAG 4 cut(s) 423, 935, 1287, 1489
MaeII ACGT 1 cut(s) 585
MaeIII GTNAC 1 cut(s) 926
MflI RGATCY 2 cut(s) 145, 1240
MhlI GDGCHC 3 cut(s) 158, 748, 1203
MlsI TGGCCA 2 cut(s) 122, 460
MluNI TGGCCA 2 cut(s) 122, 460
MlyI GAGTC 1 cut(s) 359
MmeI TCCRAC 1 cut(s) 378
Mox20I TGGCCA 2 cut(s) 122, 460
MroXI GAANNNNTTC 2 cut(s) 642, 1403
MscI TGGCCA 2 cut(s) 122, 460
MseI TTAA 4 cut(s) 597, 984, 1304, 1335
MslI CAYNNNNRTG 2 cut(s) 686, 912
Msp20I TGGCCA 2 cut(s) 122, 460
MspCI CTTAAG 1 cut(s) 1334
MvnI CGCG 1 cut(s) 89
MwoI GCNNNNNNNGC 4 cut(s) 428, 952, 1060, 1097
NcoI CCATGG 1 cut(s) 117
NlaIII CATG 8 cut(s) 121, 409, 504, 855, 860, 946, 1158, 1352
NspI RCATGY 3 cut(s) 409, 855, 946
NspV TTCGAA 1 cut(s) 441
PaeI GCATGC 2 cut(s) 855, 946
PaeR7I CTCGAG 1 cut(s) 1388
PceI AGGCCT 1 cut(s) 223
PdmI GAANNNNTTC 2 cut(s) 642, 1403
PfeI GAWTC 4 cut(s) 203, 331, 397, 476
PflMI CCANNNNNTGG 1 cut(s) 862
PkrI GCNGC 1 cut(s) 1090
PleI GAGTC 1 cut(s) 358
PpsI GAGTC 1 cut(s) 358
Psp124BI GAGCTC 1 cut(s) 748
Psp1406I AACGTT 1 cut(s) 585
PsuI RGATCY 2 cut(s) 145, 1240
RsaI GTAC 3 cut(s) 981, 1394, 1454
RsaNI GTAC 3 cut(s) 980, 1393, 1453
RseI CAYNNNNRTG 2 cut(s) 686, 912
SacI GAGCTC 1 cut(s) 748
SaqAI TTAA 4 cut(s) 597, 984, 1304, 1335
SatI GCNGC 1 cut(s) 1089
ScaI AGTACT 3 cut(s) 981, 1394, 1454
SchI GAGTC 1 cut(s) 359
SduI GDGCHC 3 cut(s) 158, 748, 1203
SfaNI GCATC 2 cut(s) 479, 1255
SfcI CTRYAG 1 cut(s) 342
Sfr274I CTCGAG 1 cut(s) 1388
SfuI TTCGAA 1 cut(s) 441
SlaI CTCGAG 1 cut(s) 1388
SmiMI CAYNNNNRTG 2 cut(s) 686, 912
SmlI CTYRAG 3 cut(s) 316, 1334, 1388
SmoI CTYRAG 3 cut(s) 316, 1334, 1388
SphI GCATGC 2 cut(s) 855, 946
SseBI AGGCCT 1 cut(s) 223
SsiI CCGC 2 cut(s) 89, 661
SspMI CTAG 4 cut(s) 423, 935, 1287, 1489
SstI GAGCTC 1 cut(s) 748
StuI AGGCCT 1 cut(s) 223
StyI CCWWGG 3 cut(s) 117, 392, 417
TaaI ACNGT 3 cut(s) 571, 657, 1462
TaiI ACGT 1 cut(s) 588
TaqI TCGA 8 cut(s) 102, 441, 447, 618, 785, 840, 1205, 1389
TatI WGTACW 3 cut(s) 979, 1392, 1452
TfiI GAWTC 4 cut(s) 203, 331, 397, 476
Tru1I TTAA 4 cut(s) 597, 984, 1304, 1335
Tru9I TTAA 4 cut(s) 597, 984, 1304, 1335
TscAI CASTG 3 cut(s) 1370, 1467, 1480
TseI GCWGC 1 cut(s) 1088
TspDTI ATGAA 4 cut(s) 244, 489, 1337, 1396
TspGWI ACGGA 2 cut(s) 173, 1373
TspRI CASTG 3 cut(s) 1370, 1467, 1480
Van91I CCANNNNNTGG 1 cut(s) 862
Vha464I CTTAAG 1 cut(s) 1334
XapI RAATTY 7 cut(s) 443, 834, 1174, 1208, 1225, 1300, 1434
XceI RCATGY 3 cut(s) 409, 855, 946
XhoI CTCGAG 1 cut(s) 1388
XmnI GAANNNNTTC 2 cut(s) 642, 1403
XspI CTAG 4 cut(s) 423, 935, 1287, 1489
ZrmI AGTACT 3 cut(s) 981, 1394, 1454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.