Rmu_sc0005791.1_g000005

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005791.1
OG0000917
Physical Location & Seq
Forward (+)
24493 .. 25896
1404 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005791.1_g000005.1.cds

Sequence Viewer

Length: 1404 bp
atgtcacaagatcggccaacagtgggcacggataaagaatctggtgtcatgattgccaacatcaggaggagttatgaagatcttgatggcacggaattgaaggtctgcttgctttctttgtcgatcttccccgaaaatgcagccataaagaagaggcctctaagctactggtggataggcgaggacttcatcacatctaccaaagagaagagagccgaagagatcggacaagaaatcttcggaaagctcatgaggaaggacttgattcaaccaggtgcaggtgagcccgactgtgaattacttgtcaaaagttgtacaatgcacccttggattcgtcgcatgttgatatccttggccagtgaggctaagctgtttgaattcgattccaaatggccaatgatgccatcttattccacgaaaaagtatgggcgtgcatgtttagtttctaaggatccagaaaatgttaagccaatttccgagggtgctgagtcggatactctattgacattattcaatgtaaatgttcgatatcttgatctggaacaaaaacgactagaggagttgaagaaggttgaggttcttcagcttggacggtggcagaactcgcctacacatcacattgaagtggaacatcgaagatttgttggttcctcagctgagggaattctaaatggtttgggggctcagaagtacttgaagtatctgagcctccgaggaatatcgagaattacccaactccctgattccatcttgaatcttatcagcctcgaaattctcgatctgagagcctgtcacgacttagagaggttaccttcggatatctcttcactgaagaagctcacacatttggatgtatcagagtgtttcttactagaaggcatgccgaaagggcttcaaaaacttgcttccctccaagtactaaaaggttttctgataggaacactgaagaaaactccctgccggcttggtgagcttgccaagttgaagaatctaaggcggcttagcatacacatgggaaatgaggttgtcgttcaaccaggagaattcacaaagctagaggttgcatcttccctccgccacctgaagatatcatggggagtgctttcttcaaatttcaaagaagatatcgacagtgagtccgagaatttattgtttccacccaacttagaaaaacttgatcttcaaagctttccaacaccgaaattaccagacgggttgaagcctagcaaactgccgaagttaaagaagctctatataatgggtggggaacttgctagcttgtctcatgaggaaactaatgagcgctggaaagtggaaatcttgcgtctccatttcctgaaaaatctgaaaaaactggacttgccgaccttgagagagtttacctactgcgcagtgactaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

467

Amino Acids

53.11

Weight (kDa)

8.78

Isoelectric Point (pI)

50.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 269
Acc16I TGCGCA 1 cut(s) 1390
Acc36I ACCTGC 1 cut(s) 269
AciI CCGC 2 cut(s) 997, 1075
AclWI GGATC 2 cut(s) 446, 459
AcoI YGGCCR 3 cut(s) 14, 354, 392
AcsI RAATTY 6 cut(s) 377, 663, 771, 1043, 1111, 1144
AcuI CTGAAG 4 cut(s) 566, 851, 965, 1103
AfaI GTAC 3 cut(s) 316, 692, 918
AfeI AGCGCT 1 cut(s) 1304
AfiI CCNNNNNNNGG 3 cut(s) 23, 63, 278
AhdI GACNNNNNGTC 1 cut(s) 1135
AjnI CCWGG 2 cut(s) 271, 1036
Alw26I GTCTC 2 cut(s) 1287, 1331
AlwI GGATC 2 cut(s) 446, 459
Aor51HI AGCGCT 1 cut(s) 1304
AoxI GGCC 4 cut(s) 14, 155, 354, 392
ApeKI GCWGC 1 cut(s) 140
ApoI RAATTY 6 cut(s) 377, 663, 771, 1043, 1111, 1144
AspLEI GCGC 2 cut(s) 1305, 1391
AsuHPI GGTGA 2 cut(s) 293, 980
AsuNHI GCTAGC 1 cut(s) 1274
BaeGI GKGCMC 1 cut(s) 29
BalI TGGCCA 2 cut(s) 356, 394
BamHI GGATCC 1 cut(s) 451
BanII GRGCYC 2 cut(s) 288, 685
BbvCI CCTCAGC 2 cut(s) 652, 657
BbvI GCAGC 1 cut(s) 152
BccI CCATC 3 cut(s) 80, 412, 755
BciT130I CCWGG 2 cut(s) 273, 1038
BciVI GTATCC 1 cut(s) 487
BcoDI GTCTC 2 cut(s) 1287, 1331
BfaI CTAG 5 cut(s) 554, 872, 1055, 1224, 1275
BfoI RGCGCY 1 cut(s) 1306
BfuAI ACCTGC 1 cut(s) 269
BfuI GTATCC 1 cut(s) 487
BglI GCCNNNNNGGC 2 cut(s) 362, 889
BglII AGATCT 1 cut(s) 79
BisI GCNGC 2 cut(s) 141, 998
BlpI GCTNAGC 2 cut(s) 366, 1001
BlsI GCNGC 2 cut(s) 142, 999
BmcAI AGTACT 2 cut(s) 692, 918
Bme1390I CCNGG 2 cut(s) 273, 1038
BmeRI GACNNNNNGTC 1 cut(s) 1135
BmiI GGNNCC 2 cut(s) 453, 649
BmrFI CCNGG 2 cut(s) 273, 1038
BmsI GCATC 2 cut(s) 390, 1073
BmtI GCTAGC 1 cut(s) 1278
Bpu10I CCTNAGC 2 cut(s) 652, 657
Bpu1102I GCTNAGC 2 cut(s) 366, 1001
BpuEI CTTGAG 1 cut(s) 1390
BsaJI CCNNGG 4 cut(s) 326, 351, 477, 712
Bsc4I CCNNNNNNNGG 3 cut(s) 23, 63, 278
Bse118I RCCGGY 1 cut(s) 960
Bse1I ACTGG 3 cut(s) 173, 357, 1359
BseBI CCWGG 2 cut(s) 273, 1038
BseDI CCNNGG 4 cut(s) 326, 351, 477, 712
BseGI GGATG 1 cut(s) 856
BseLI CCNNNNNNNGG 3 cut(s) 23, 63, 278
BseMII CTCAG 6 cut(s) 477, 648, 666, 695, 698, 773
BseNI ACTGG 3 cut(s) 173, 357, 1359
BseRI GAGGAG 2 cut(s) 82, 572
BseSI GKGCMC 1 cut(s) 29
BseXI GCAGC 1 cut(s) 152
BsgI GTGCAG 1 cut(s) 297
BshFI GGCC 4 cut(s) 16, 157, 356, 394
BsiSI CCGG 1 cut(s) 961
BslI CCNNNNNNNGG 3 cut(s) 23, 63, 278
BsmAI GTCTC 2 cut(s) 1287, 1331
BsmBI CGTCTC 1 cut(s) 1331
BsnI GGCC 4 cut(s) 16, 157, 356, 394
Bsp1286I GDGCHC 3 cut(s) 29, 288, 685
Bsp1407I TGTACA 1 cut(s) 314
Bsp143I GATC 8 cut(s) 10, 79, 123, 222, 451, 535, 778, 1177
Bsp1720I GCTNAGC 2 cut(s) 366, 1001
BspACI CCGC 2 cut(s) 997, 1075
BspANI GGCC 4 cut(s) 16, 157, 356, 394
BspCNI CTCAG 6 cut(s) 478, 649, 665, 696, 697, 774
BspHI TCATGA 3 cut(s) 48, 249, 1285
BspLI GGNNCC 2 cut(s) 453, 649
BspMI ACCTGC 1 cut(s) 269
BspOI GCTAGC 1 cut(s) 1278
BspPI GGATC 2 cut(s) 446, 459
BsrFI RCCGGY 1 cut(s) 960
BsrGI TGTACA 1 cut(s) 314
BsrI ACTGG 3 cut(s) 173, 357, 1359
BssAI RCCGGY 1 cut(s) 960
BssECI CCNNGG 4 cut(s) 326, 351, 477, 712
BssMI GATC 8 cut(s) 10, 79, 123, 222, 451, 535, 778, 1177
BssT1I CCWWGG 2 cut(s) 326, 351
Bst2UI CCWGG 2 cut(s) 273, 1038
Bst4CI ACNGT 4 cut(s) 22, 293, 594, 1133
Bst6I CTCTTC 4 cut(s) 146, 203, 213, 829
BstAUI TGTACA 1 cut(s) 314
BstC8I GCNNGC 6 cut(s) 110, 432, 881, 962, 975, 1276
BstEII GGTNACC 1 cut(s) 807
BstF5I GGATG 1 cut(s) 856
BstH2I RGCGCY 1 cut(s) 1306
BstHHI GCGC 2 cut(s) 1305, 1391
BstKTI GATC 8 cut(s) 13, 82, 126, 225, 454, 538, 781, 1180
BstMAI GTCTC 2 cut(s) 1287, 1331
BstMBI GATC 8 cut(s) 10, 79, 123, 222, 451, 535, 778, 1177
BstMWI GCNNNNNNNGC 5 cut(s) 362, 400, 604, 889, 970
BstNI CCWGG 2 cut(s) 273, 1038
BstNSI RCATGY 3 cut(s) 343, 438, 883
BstPI GGTNACC 1 cut(s) 807
BstSCI CCNGG 2 cut(s) 271, 1036
BstSLI GKGCMC 1 cut(s) 29
BstV1I GCAGC 1 cut(s) 152
BstX2I RGATCY 2 cut(s) 79, 451
BstYI RGATCY 2 cut(s) 79, 451
BsuI GTATCC 1 cut(s) 487
BsuRI GGCC 4 cut(s) 16, 157, 356, 394
BtsCI GGATG 1 cut(s) 856
BtsI GCAGTG 1 cut(s) 1398
BtsIMutI CAGTG 6 cut(s) 27, 364, 827, 941, 1138, 1398
BveI ACCTGC 1 cut(s) 269
Cac8I GCNNGC 6 cut(s) 110, 432, 881, 962, 975, 1276
CciI TCATGA 3 cut(s) 48, 249, 1285
CfoI GCGC 2 cut(s) 1305, 1391
Cfr10I RCCGGY 1 cut(s) 960
CseI GACGC 1 cut(s) 1313
CsiI ACCWGGT 1 cut(s) 271
Csp6I GTAC 3 cut(s) 315, 691, 917
CviAII CATG 8 cut(s) 49, 250, 340, 435, 880, 1012, 1092, 1286
CviQI GTAC 3 cut(s) 315, 691, 917
DpnI GATC 8 cut(s) 12, 81, 125, 224, 453, 537, 780, 1179
DpnII GATC 8 cut(s) 10, 79, 123, 222, 451, 535, 778, 1177
DriI GACNNNNNGTC 1 cut(s) 1135
EaeI YGGCCR 3 cut(s) 14, 354, 392
Eam1104I CTCTTC 4 cut(s) 146, 203, 213, 829
Eam1105I GACNNNNNGTC 1 cut(s) 1135
EarI CTCTTC 4 cut(s) 146, 203, 213, 829
EciI GGCGGA 1 cut(s) 1064
Eco130I CCWWGG 2 cut(s) 326, 351
Eco147I AGGCCT 1 cut(s) 157
Eco24I GRGCYC 2 cut(s) 288, 685
Eco32I GATATC 5 cut(s) 348, 530, 820, 1089, 1126
Eco47III AGCGCT 1 cut(s) 1304
Eco57I CTGAAG 4 cut(s) 566, 851, 965, 1103
Eco91I GGTNACC 1 cut(s) 807
EcoO65I GGTNACC 1 cut(s) 807
EcoRI GAATTC 3 cut(s) 377, 663, 1043
EcoRII CCWGG 2 cut(s) 271, 1036
EcoRV GATATC 5 cut(s) 348, 530, 820, 1089, 1126
EcoT14I CCWWGG 2 cut(s) 326, 351
EcoT38I GRGCYC 2 cut(s) 288, 685
ErhI CCWWGG 2 cut(s) 326, 351
Esp3I CGTCTC 1 cut(s) 1331
FaeI CATG 8 cut(s) 52, 253, 343, 438, 883, 1015, 1095, 1289
FalI AAGNNNNNCTT 2 cut(s) 92, 124
FatI CATG 8 cut(s) 48, 249, 339, 434, 879, 1011, 1091, 1285
Fnu4HI GCNGC 2 cut(s) 141, 998
FokI GGATG 1 cut(s) 863
FriOI GRGCYC 2 cut(s) 288, 685
Fsp4HI GCNGC 2 cut(s) 141, 998
FspBI CTAG 5 cut(s) 554, 872, 1055, 1224, 1275
FspI TGCGCA 1 cut(s) 1390
GlaI GCGC 2 cut(s) 1304, 1390
GluI GCNGC 2 cut(s) 141, 998
HaeII RGCGCY 1 cut(s) 1306
HaeIII GGCC 4 cut(s) 16, 157, 356, 394
HapII CCGG 1 cut(s) 961
HgaI GACGC 1 cut(s) 1313
HhaI GCGC 2 cut(s) 1305, 1391
Hin1II CATG 8 cut(s) 52, 253, 343, 438, 883, 1015, 1095, 1289
Hin6I GCGC 2 cut(s) 1303, 1389
HinP1I GCGC 2 cut(s) 1303, 1389
HindIII AAGCTT 1 cut(s) 1186
HinfI GANTC 9 cut(s) 38, 265, 331, 383, 488, 743, 754, 988, 1136
HpaII CCGG 1 cut(s) 961
HphI GGTGA 2 cut(s) 293, 980
Hpy166II GTNNAC 1 cut(s) 1380
Hpy8I GTNNAC 1 cut(s) 1380
Hpy99I CGWCG 1 cut(s) 339
HpyAV CCTTC 5 cut(s) 94, 250, 562, 822, 869
HpyCH4III ACNGT 4 cut(s) 22, 293, 594, 1133
HpyCH4V TGCA 5 cut(s) 140, 278, 322, 434, 1064
HpyF10VI GCNNNNNNNGC 5 cut(s) 362, 400, 604, 889, 970
Hsp92II CATG 8 cut(s) 52, 253, 343, 438, 883, 1015, 1095, 1289
HspAI GCGC 2 cut(s) 1303, 1389
KroI GCCGGC 1 cut(s) 960
KroNI GCCGGC 1 cut(s) 962
Kzo9I GATC 8 cut(s) 10, 79, 123, 222, 451, 535, 778, 1177
Lsp1109I GCAGC 1 cut(s) 152
LweI GCATC 2 cut(s) 390, 1073
MabI ACCWGGT 1 cut(s) 271
MaeI CTAG 5 cut(s) 554, 872, 1055, 1224, 1275
MaeIII GTNAC 4 cut(s) 3, 791, 807, 1393
MalI GATC 8 cut(s) 12, 81, 125, 224, 453, 537, 780, 1179
MboI GATC 8 cut(s) 10, 79, 123, 222, 451, 535, 778, 1177
MflI RGATCY 2 cut(s) 79, 451
MhlI GDGCHC 3 cut(s) 29, 288, 685
MlsI TGGCCA 2 cut(s) 356, 394
MluNI TGGCCA 2 cut(s) 356, 394
MlyI GAGTC 2 cut(s) 497, 1145
MmeI TCCRAC 2 cut(s) 471, 1217
Mox20I TGGCCA 2 cut(s) 356, 394
MroNI GCCGGC 1 cut(s) 960
MscI TGGCCA 2 cut(s) 356, 394
MseI TTAA 2 cut(s) 465, 1241
MslI CAYNNNNRTG 3 cut(s) 623, 849, 1010
Msp20I TGGCCA 2 cut(s) 356, 394
MspA1I CMGCKG 1 cut(s) 656
MspI CCGG 1 cut(s) 961
MspR9I CCNGG 2 cut(s) 273, 1038
MvaI CCWGG 2 cut(s) 273, 1038
MwoI GCNNNNNNNGC 5 cut(s) 362, 400, 604, 889, 970
NaeI GCCGGC 1 cut(s) 962
NdeII GATC 8 cut(s) 10, 79, 123, 222, 451, 535, 778, 1177
NgoMIV GCCGGC 1 cut(s) 960
NheI GCTAGC 1 cut(s) 1274
NlaIII CATG 8 cut(s) 52, 253, 343, 438, 883, 1015, 1095, 1289
NlaIV GGNNCC 2 cut(s) 453, 649
NmuCI GTSAC 3 cut(s) 3, 791, 1393
NsbI TGCGCA 1 cut(s) 1390
NspI RCATGY 3 cut(s) 343, 438, 883
PaeI GCATGC 1 cut(s) 883
PagI TCATGA 3 cut(s) 48, 249, 1285
PaqCI CACCTGC 1 cut(s) 269
PceI AGGCCT 1 cut(s) 157
PcsI WCGNNNNNNNCGW 1 cut(s) 774
PdiI GCCGGC 1 cut(s) 962
PfeI GAWTC 7 cut(s) 38, 265, 331, 383, 743, 754, 988
PkrI GCNGC 2 cut(s) 142, 999
PleI GAGTC 2 cut(s) 496, 1144
PpsI GAGTC 2 cut(s) 496, 1144
Psp6I CCWGG 2 cut(s) 271, 1036
PspEI GGTNACC 1 cut(s) 807
PspGI CCWGG 2 cut(s) 271, 1036
PspN4I GGNNCC 2 cut(s) 453, 649
PsuI RGATCY 2 cut(s) 79, 451
PvuII CAGCTG 1 cut(s) 656
RsaI GTAC 3 cut(s) 316, 692, 918
RsaNI GTAC 3 cut(s) 315, 691, 917
RseI CAYNNNNRTG 3 cut(s) 623, 849, 1010
SaqAI TTAA 2 cut(s) 465, 1241
SatI GCNGC 2 cut(s) 141, 998
Sau3AI GATC 8 cut(s) 10, 79, 123, 222, 451, 535, 778, 1177
ScaI AGTACT 2 cut(s) 692, 918
SchI GAGTC 2 cut(s) 497, 1145
ScrFI CCNGG 2 cut(s) 273, 1038
SduI GDGCHC 3 cut(s) 29, 288, 685
SexAI ACCWGGT 1 cut(s) 271
SfaNI GCATC 2 cut(s) 390, 1073
SmiMI CAYNNNNRTG 3 cut(s) 623, 849, 1010
SmlI CTYRAG 1 cut(s) 1369
SmoI CTYRAG 1 cut(s) 1369
SphI GCATGC 1 cut(s) 883
SseBI AGGCCT 1 cut(s) 157
SsiI CCGC 2 cut(s) 997, 1075
SspMI CTAG 5 cut(s) 554, 872, 1055, 1224, 1275
StuI AGGCCT 1 cut(s) 157
StyD4I CCNGG 2 cut(s) 271, 1036
StyI CCWWGG 2 cut(s) 326, 351
TaaI ACNGT 4 cut(s) 22, 293, 594, 1133
TaqI TCGA 8 cut(s) 122, 381, 526, 634, 722, 768, 777, 1128
TatI WGTACW 3 cut(s) 314, 690, 916
TauI GCSGC 1 cut(s) 1000
TfiI GAWTC 7 cut(s) 38, 265, 331, 383, 743, 754, 988
Tru1I TTAA 2 cut(s) 465, 1241
Tru9I TTAA 2 cut(s) 465, 1241
TscAI CASTG 6 cut(s) 27, 364, 834, 948, 1138, 1398
TseFI GTSAC 3 cut(s) 3, 791, 1393
TseI GCWGC 1 cut(s) 140
Tsp45I GTSAC 3 cut(s) 3, 791, 1393
TspDTI ATGAA 2 cut(s) 90, 178
TspGWI ACGGA 2 cut(s) 44, 107
TspRI CASTG 6 cut(s) 27, 364, 834, 948, 1138, 1398
XapI RAATTY 6 cut(s) 377, 663, 771, 1043, 1111, 1144
XceI RCATGY 3 cut(s) 343, 438, 883
XspI CTAG 5 cut(s) 554, 872, 1055, 1224, 1275
ZrmI AGTACT 2 cut(s) 692, 918
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.