Rorug02G0174500

Encoded by

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
15973945 .. 15974175
231 bp
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UTR
Exon/CDS
Intron
Rorug02G0174500.1

Sequence Viewer

Length: 231 bp
ATGGATTCTGTTGGTGTTCAAAGCGTTCATTATATTCCTAGAGGGGCTAATATGGCGGCTCATGTAGTAGCAGGATTCGTAGCTCGTGATACTGGGCGGTATGTTTGGTTAGGGATTGGGCCTTCTTGGCTCATGGATGTTATCCATGGTGACGGACCTATAACTGGTTTGGTTAGTAGGGAAGAGAGTGGGGATTTAGTGTCCACCACTGGTCATTCCCATATTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

76

Amino Acids

8.07

Weight (kDa)

5.84

Isoelectric Point (pI)

33.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 56, 97
AfiI CCNNNNNNNGG 1 cut(s) 164
AgsI TTSAA 1 cut(s) 20
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
AoxI GGCC 1 cut(s) 119
AspS9I GGNCC 2 cut(s) 119, 155
AsuHPI GGTGA 1 cut(s) 161
AvaII GGWCC 1 cut(s) 155
BauI CACGAG 1 cut(s) 84
BfaI CTAG 1 cut(s) 39
BglI GCCNNNNNGGC 1 cut(s) 127
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
Bme18I GGWCC 1 cut(s) 155
BmgT120I GGNCC 2 cut(s) 119, 155
BmrI ACTGGG 1 cut(s) 102
BmuI ACTGGG 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 145
Bsc4I CCNNNNNNNGG 1 cut(s) 164
Bse1I ACTGG 3 cut(s) 97, 169, 214
BseDI CCNNGG 1 cut(s) 145
BseGI GGATG 1 cut(s) 142
BseLI CCNNNNNNNGG 1 cut(s) 164
BseNI ACTGG 3 cut(s) 97, 169, 214
BshFI GGCC 1 cut(s) 121
BslI CCNNNNNNNGG 1 cut(s) 164
BsnI GGCC 1 cut(s) 121
Bsp19I CCATGG 1 cut(s) 145
BspACI CCGC 2 cut(s) 56, 97
BspANI GGCC 1 cut(s) 121
BsrI ACTGG 3 cut(s) 97, 169, 214
BssECI CCNNGG 1 cut(s) 145
BssSI CACGAG 1 cut(s) 84
BssT1I CCWWGG 1 cut(s) 145
Bst2BI CACGAG 1 cut(s) 84
Bst6I CTCTTC 1 cut(s) 177
BstDSI CCRYGG 1 cut(s) 145
BstF5I GGATG 1 cut(s) 142
BstMWI GCNNNNNNNGC 2 cut(s) 53, 127
BsuRI GGCC 1 cut(s) 121
BtgI CCRYGG 1 cut(s) 145
BtsCI GGATG 1 cut(s) 142
BtsIMutI CAGTG 1 cut(s) 207
Cfr13I GGNCC 2 cut(s) 119, 155
CviAII CATG 3 cut(s) 62, 133, 146
CviJI RGCY 5 cut(s) 47, 59, 83, 121, 130
CviKI_1 RGCY 5 cut(s) 47, 59, 83, 121, 130
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
Eco130I CCWWGG 1 cut(s) 145
Eco47I GGWCC 1 cut(s) 155
EcoT14I CCWWGG 1 cut(s) 145
ErhI CCWWGG 1 cut(s) 145
FaeI CATG 3 cut(s) 65, 136, 149
FaiI YATR 9 cut(s) 33, 53, 63, 102, 134, 147, 161, 222, 227
FatI CATG 3 cut(s) 61, 132, 145
Fnu4HI GCNGC 1 cut(s) 57
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 1 cut(s) 57
FspBI CTAG 1 cut(s) 39
GluI GCNGC 1 cut(s) 57
HaeIII GGCC 1 cut(s) 121
Hin1II CATG 3 cut(s) 65, 136, 149
HinfI GANTC 2 cut(s) 5, 75
HphI GGTGA 1 cut(s) 161
Hpy166II GTNNAC 1 cut(s) 204
Hpy188III TCNNGA 1 cut(s) 86
Hpy8I GTNNAC 1 cut(s) 204
HpyAV CCTTC 1 cut(s) 132
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 127
Hsp92II CATG 3 cut(s) 65, 136, 149
LpnPI CCDG 4 cut(s) 57, 78, 150, 195
MaeI CTAG 1 cut(s) 39
MaeIII GTNAC 1 cut(s) 149
MboII GAAGA 1 cut(s) 194
MnlI CCTC 1 cut(s) 35
MwoI GCNNNNNNNGC 2 cut(s) 53, 127
NcoI CCATGG 1 cut(s) 145
NlaIII CATG 3 cut(s) 65, 136, 149
NmuCI GTSAC 1 cut(s) 149
PfeI GAWTC 2 cut(s) 5, 75
PkrI GCNGC 1 cut(s) 58
PspPI GGNCC 2 cut(s) 119, 155
SatI GCNGC 1 cut(s) 57
Sau96I GGNCC 2 cut(s) 119, 155
SetI ASST 2 cut(s) 85, 160
SinI GGWCC 1 cut(s) 155
SsiI CCGC 2 cut(s) 56, 97
SspMI CTAG 1 cut(s) 39
StyI CCWWGG 1 cut(s) 145
TauI GCSGC 1 cut(s) 59
TfiI GAWTC 2 cut(s) 5, 75
TscAI CASTG 1 cut(s) 214
TseFI GTSAC 1 cut(s) 149
Tsp45I GTSAC 1 cut(s) 149
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 168
TspRI CASTG 1 cut(s) 214
VpaK11BI GGWCC 1 cut(s) 155
XspI CTAG 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.