Rroxscaffold_2G00131120

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000917
Physical Location & Seq
Reverse (-)
67675771 .. 67677216
1446 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00131120.1

Sequence Viewer

Length: 1446 bp
ATGGCAAATATCGAGATGGGTCCACCTGAGAGCGCGGAGGCAATTTTCGATAAAAGTGAGGCCATGGCCAACATAAGGAGGAGTTATGGAGATCTTCGGGGCACGGAATTGAAGGTCTGTCTTCTTTCTTTCTCAATCTTCCCTGAGGGTTCTGTGATAAGAAAGAGGCCTCTAATTTACTGGTGGATCGGCGAGGGCTTCATCACGGCTACCAAAGAGAAGACAGCAGAGGAGATAGGAGAAGACATCTTTGCAAAACTCTTGAGAAAGGACTTGATTCAACCAGCTTCAGGTGAGTCCAACTGTGAATTACTTGTCAAAAATTGTTGTGTTCACCCTTGGATTCGTCGTATGTTGATCTCCTTGGCTAGAGAGGCTAGGCTGTTCGACTTCGATCCCCAATGGCCAATGATGCCATCTGATTCTATATGGACTTGTAGGCGTTCATGCTTAGTTTCTAAGGAGGATAAGTCAAGAACTCCTCAGGGTGATGATCAATTGAAACAAAATCTATTGACAGTATTCAATGTAAACGTTCAATATCTTGATTTGAAACAAGAATGGCTCGACAAGTTGAAGAGGGTTGAAGTTCTTCACTTTGGCCGGTGGCAGAGCTCCCCCAAATATCACATTGAAGTGGATCAGAAAACATTTGATGGTTCACAAGCTGTATCGTTTCTAAATGGTTTGGGAGCTCAGAAGCACTTGAAGTATCTTAGCCTCAGAGGAATATCAAGAATTAGCGAACTCCCTGCTTCTATTCGCAGTCTTATCAGCCTTGAAATTCTCGATCTGAGAGCATGCCATGACTTGGAGAGGTTGCCTTCAGACATCTCATCATTGAAGAAGCTCACGCATTTGGATGTATCAGAGTGTTACTTACTAGAAGGCATGCCCAAAGGGCTTCACAAACTTTCTTCCCTGCAAGTACTTAAAGGTTTTCTGATAGGATCACAGGAAAAAACTCCCACCAAACTTGGTGAACTTGCAACATTGAAGAAGCTAAGGAGGCTCAGCATACACTTTGGGAATGGGGCTGCAATTCAAGCAGTGGAGTTCAAAAAGTTGAAAGATATGTCATCTCTTCGCTTCCTGAAGGTATCATGGGGAGTGGTTTCTAAAAATTTGACAAAGGAGATTGATGATGAGTCCTCGAAACTCTTGTTTCCAGAGAATTTAGAAAAATTGGATCTTCAAGGCTTTCCCCTAGCACATGCACCAGAAGGGTTGAAGCCTAGCAAACTGAAAAATTTAAAGAAGCTCTATATAAGGGGTGGGGAACTTGAGAGCTTGGATCATGGGGAAAATGAGCCATGGAAAGTGGAAATCTTGCGTCTCGAGTACTTGAAGAAGTTCATATACTCAGAAGAAGAAGTGAAGAGAAATTTTCCTCATCGGAAGTACTGGACAGTGAAGAACCTCAGTGAAGCTGAGGCTAGGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

481

Amino Acids

55.17

Weight (kDa)

8.99

Isoelectric Point (pI)

52.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_DRP PF23559 46 - 116 4.1e-14 Disease resistance protein Winged helix domain
LRR_R13L1-DRL21 PF25019 183 - 292 9.6e-06 R13L1/DRL21 LRRs
LRR_14 PF23598 227 - 429 6.7e-28 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 811
AccII CGCG 1 cut(s) 35
AciI CCGC 1 cut(s) 35
AclI AACGTT 1 cut(s) 534
AclWI GGATC 6 cut(s) 194, 389, 648, 958, 1197, 1302
AcoI YGGCCR 3 cut(s) 66, 404, 601
AcsI RAATTY 5 cut(s) 783, 1123, 1174, 1249, 1384
AcuI CTGAAG 3 cut(s) 273, 810, 1115
AfaI GTAC 3 cut(s) 930, 1343, 1403
AfiI CCNNNNNNNGG 3 cut(s) 75, 290, 811
AluBI AGCT 9 cut(s) 287, 615, 668, 695, 850, 1003, 1261, 1290, 1430
AluI AGCT 9 cut(s) 287, 615, 668, 695, 850, 1003, 1261, 1290, 1430
Alw21I GWGCWC 2 cut(s) 617, 697
Alw26I GTCTC 1 cut(s) 1340
AlwI GGATC 6 cut(s) 194, 389, 648, 958, 1197, 1302
Ama87I CYCGRG 1 cut(s) 1337
AoxI GGCC 5 cut(s) 60, 66, 167, 404, 601
ApeKI GCWGC 1 cut(s) 1037
ApoI RAATTY 5 cut(s) 783, 1123, 1174, 1249, 1384
Asp700I GAANNNNTTC 2 cut(s) 591, 1352
AspLEI GCGC 1 cut(s) 35
AspS9I GGNCC 1 cut(s) 20
AsuHPI GGTGA 4 cut(s) 305, 326, 500, 992
AvaI CYCGRG 1 cut(s) 1337
AvaII GGWCC 1 cut(s) 20
AxyI CCTNAGG 2 cut(s) 144, 483
BaeGI GKGCMC 1 cut(s) 104
BalI TGGCCA 2 cut(s) 68, 406
BanII GRGCYC 2 cut(s) 617, 697
BarI GAAGNNNNNNTAC 2 cut(s) 1343, 1375
BbsI GAAGAC 3 cut(s) 113, 227, 249
Bbv12I GWGCWC 2 cut(s) 617, 697
BbvCI CCTCAGC 1 cut(s) 1431
BbvI GCAGC 1 cut(s) 1024
BccI CCATC 3 cut(s) 10, 424, 650
BceAI ACGGC 1 cut(s) 222
BcgI CGANNNNNNTGC 2 cut(s) 734, 768
BclI TGATCA 1 cut(s) 493
BcoDI GTCTC 1 cut(s) 1340
BfaI CTAG 6 cut(s) 369, 378, 884, 1208, 1236, 1437
BglI GCCNNNNNGGC 1 cut(s) 901
BglII AGATCT 1 cut(s) 91
BisI GCNGC 1 cut(s) 1038
BlpI GCTNAGC 1 cut(s) 1013
BlsI GCNGC 1 cut(s) 1039
BmcAI AGTACT 3 cut(s) 930, 1343, 1403
Bme18I GGWCC 1 cut(s) 20
BmeT110I CYCGRG 1 cut(s) 1337
BmgT120I GGNCC 1 cut(s) 20
BmiI GGNNCC 1 cut(s) 21
BmsI GCATC 1 cut(s) 402
BpiI GAAGAC 3 cut(s) 113, 227, 249
Bpu10I CCTNAGC 2 cut(s) 1004, 1431
Bpu1102I GCTNAGC 1 cut(s) 1013
BpuEI CTTGAG 2 cut(s) 283, 1304
BsaJI CCNNGG 4 cut(s) 63, 338, 363, 1313
BsaXI ACNNNNNCTCC 2 cut(s) 455, 485
Bsc4I CCNNNNNNNGG 3 cut(s) 75, 290, 811
Bse118I RCCGGY 1 cut(s) 603
Bse1I ACTGG 2 cut(s) 185, 1409
Bse21I CCTNAGG 2 cut(s) 144, 483
BseDI CCNNGG 4 cut(s) 63, 338, 363, 1313
BseGI GGATG 1 cut(s) 868
BseLI CCNNNNNNNGG 3 cut(s) 75, 290, 811
BseNI ACTGG 2 cut(s) 185, 1409
BseRI GAGGAG 3 cut(s) 94, 245, 471
BseSI GKGCMC 1 cut(s) 104
BseXI GCAGC 1 cut(s) 1024
Bsh1236I CGCG 1 cut(s) 35
BshFI GGCC 5 cut(s) 62, 68, 169, 406, 603
BsiHKAI GWGCWC 2 cut(s) 617, 697
BsiHKCI CYCGRG 1 cut(s) 1337
BsiSI CCGG 1 cut(s) 604
BslI CCNNNNNNNGG 3 cut(s) 75, 290, 811
BsmAI GTCTC 1 cut(s) 1340
BsmBI CGTCTC 1 cut(s) 1340
BsnI GGCC 5 cut(s) 62, 68, 169, 406, 603
BsoBI CYCGRG 1 cut(s) 1337
Bsp1286I GDGCHC 3 cut(s) 104, 617, 697
Bsp1720I GCTNAGC 1 cut(s) 1013
Bsp19I CCATGG 2 cut(s) 63, 1313
BspACI CCGC 1 cut(s) 35
BspANI GGCC 5 cut(s) 62, 68, 169, 406, 603
BspFNI CGCG 1 cut(s) 35
BspLI GGNNCC 1 cut(s) 21
BspPI GGATC 6 cut(s) 194, 389, 648, 958, 1197, 1302
BsrFI RCCGGY 1 cut(s) 603
BsrI ACTGG 2 cut(s) 185, 1409
BssAI RCCGGY 1 cut(s) 603
BssECI CCNNGG 4 cut(s) 63, 338, 363, 1313
BssT1I CCWWGG 4 cut(s) 63, 338, 363, 1313
Bst4CI ACNGT 3 cut(s) 305, 520, 1411
Bst6I CTCTTC 3 cut(s) 572, 1089, 1373
BstC8I GCNNGC 2 cut(s) 802, 893
BstDSI CCRYGG 2 cut(s) 63, 1313
BstF5I GGATG 1 cut(s) 868
BstFNI CGCG 1 cut(s) 35
BstHHI GCGC 1 cut(s) 35
BstMAI GTCTC 1 cut(s) 1340
BstMWI GCNNNNNNNGC 5 cut(s) 374, 412, 901, 1009, 1046
BstNSI RCATGY 3 cut(s) 804, 895, 1217
BstSLI GKGCMC 1 cut(s) 104
BstUI CGCG 1 cut(s) 35
BstV1I GCAGC 1 cut(s) 1024
BstV2I GAAGAC 3 cut(s) 113, 227, 249
BstX2I RGATCY 2 cut(s) 91, 1189
BstYI RGATCY 2 cut(s) 91, 1189
Bsu36I CCTNAGG 2 cut(s) 144, 483
BsuRI GGCC 5 cut(s) 62, 68, 169, 406, 603
BtgI CCRYGG 2 cut(s) 63, 1313
BtsCI GGATG 1 cut(s) 868
BtsI GCAGTG 1 cut(s) 1056
BtsIMutI CAGTG 3 cut(s) 1056, 1416, 1429
Cac8I GCNNGC 2 cut(s) 802, 893
CfoI GCGC 1 cut(s) 35
Cfr10I RCCGGY 1 cut(s) 603
Cfr13I GGNCC 1 cut(s) 20
CseI GACGC 1 cut(s) 1322
Csp6I GTAC 3 cut(s) 929, 1342, 1402
CspCI CAANNNNNGTGG 2 cut(s) 958, 993
CviAII CATG 9 cut(s) 64, 447, 801, 806, 892, 1104, 1214, 1298, 1314
CviQI GTAC 3 cut(s) 929, 1342, 1402
DraI TTTAAA 1 cut(s) 1254
EaeI YGGCCR 3 cut(s) 66, 404, 601
Eam1104I CTCTTC 3 cut(s) 572, 1089, 1373
EarI CTCTTC 3 cut(s) 572, 1089, 1373
Ecl136II GAGCTC 2 cut(s) 615, 695
Eco130I CCWWGG 4 cut(s) 63, 338, 363, 1313
Eco147I AGGCCT 1 cut(s) 169
Eco24I GRGCYC 2 cut(s) 617, 697
Eco47I GGWCC 1 cut(s) 20
Eco53kI GAGCTC 2 cut(s) 615, 695
Eco57I CTGAAG 3 cut(s) 273, 810, 1115
Eco81I CCTNAGG 2 cut(s) 144, 483
Eco88I CYCGRG 1 cut(s) 1337
EcoICRI GAGCTC 2 cut(s) 615, 695
EcoT14I CCWWGG 4 cut(s) 63, 338, 363, 1313
EcoT38I GRGCYC 2 cut(s) 617, 697
ErhI CCWWGG 4 cut(s) 63, 338, 363, 1313
Esp3I CGTCTC 1 cut(s) 1340
FaeI CATG 9 cut(s) 67, 450, 804, 809, 895, 1107, 1217, 1301, 1317
FatI CATG 9 cut(s) 63, 446, 800, 805, 891, 1103, 1213, 1297, 1313
FbaI TGATCA 1 cut(s) 493
Fnu4HI GCNGC 1 cut(s) 1038
FokI GGATG 1 cut(s) 875
FriOI GRGCYC 2 cut(s) 617, 697
Fsp4HI GCNGC 1 cut(s) 1038
FspBI CTAG 6 cut(s) 369, 378, 884, 1208, 1236, 1437
GlaI GCGC 1 cut(s) 34
GluI GCNGC 1 cut(s) 1038
HaeIII GGCC 5 cut(s) 62, 68, 169, 406, 603
HapII CCGG 1 cut(s) 604
HgaI GACGC 1 cut(s) 1322
HhaI GCGC 1 cut(s) 35
Hin1II CATG 9 cut(s) 67, 450, 804, 809, 895, 1107, 1217, 1301, 1317
Hin6I GCGC 1 cut(s) 33
HinP1I GCGC 1 cut(s) 33
HinfI GANTC 5 cut(s) 277, 296, 343, 422, 1148
HpaII CCGG 1 cut(s) 604
HphI GGTGA 4 cut(s) 305, 326, 500, 992
Hpy166II GTNNAC 5 cut(s) 23, 334, 532, 662, 983
Hpy188III TCNNGA 9 cut(s) 13, 262, 474, 545, 735, 788, 1093, 1169, 1337
Hpy8I GTNNAC 5 cut(s) 23, 334, 532, 662, 983
Hpy99I CGWCG 1 cut(s) 351
HpyAV CCTTC 5 cut(s) 106, 834, 881, 1090, 1217
HpyCH4III ACNGT 3 cut(s) 305, 520, 1411
HpyCH4IV ACGT 1 cut(s) 534
HpyCH4V TGCA 5 cut(s) 254, 925, 989, 1040, 1217
HpyF10VI GCNNNNNNNGC 5 cut(s) 374, 412, 901, 1009, 1046
HpySE526I ACGT 1 cut(s) 534
Hsp92II CATG 9 cut(s) 67, 450, 804, 809, 895, 1107, 1217, 1301, 1317
HspAI GCGC 1 cut(s) 33
Ksp22I TGATCA 1 cut(s) 493
LmnI GCTCC 2 cut(s) 620, 692
Lsp1109I GCAGC 1 cut(s) 1024
LweI GCATC 1 cut(s) 402
MaeI CTAG 6 cut(s) 369, 378, 884, 1208, 1236, 1437
MaeII ACGT 1 cut(s) 534
MaeIII GTNAC 1 cut(s) 875
MfeI CAATTG 1 cut(s) 497
MflI RGATCY 2 cut(s) 91, 1189
MhlI GDGCHC 3 cut(s) 104, 617, 697
MlsI TGGCCA 2 cut(s) 68, 406
MluNI TGGCCA 2 cut(s) 68, 406
MlyI GAGTC 2 cut(s) 305, 1157
MmeI TCCRAC 1 cut(s) 324
Mox20I TGGCCA 2 cut(s) 68, 406
MroXI GAANNNNTTC 2 cut(s) 591, 1352
MscI TGGCCA 2 cut(s) 68, 406
MseI TTAA 2 cut(s) 933, 1253
MslI CAYNNNNRTG 2 cut(s) 635, 861
Msp20I TGGCCA 2 cut(s) 68, 406
MspI CCGG 1 cut(s) 604
MunI CAATTG 1 cut(s) 497
MvnI CGCG 1 cut(s) 35
MwoI GCNNNNNNNGC 5 cut(s) 374, 412, 901, 1009, 1046
NcoI CCATGG 2 cut(s) 63, 1313
NlaIII CATG 9 cut(s) 67, 450, 804, 809, 895, 1107, 1217, 1301, 1317
NlaIV GGNNCC 1 cut(s) 21
NspI RCATGY 3 cut(s) 804, 895, 1217
PaeI GCATGC 2 cut(s) 804, 895
PaeR7I CTCGAG 1 cut(s) 1337
PceI AGGCCT 1 cut(s) 169
PdmI GAANNNNTTC 2 cut(s) 591, 1352
PfeI GAWTC 3 cut(s) 277, 343, 422
PflMI CCANNNNNTGG 1 cut(s) 811
PkrI GCNGC 1 cut(s) 1039
PleI GAGTC 2 cut(s) 304, 1156
PpsI GAGTC 2 cut(s) 304, 1156
Psp124BI GAGCTC 2 cut(s) 617, 697
Psp1406I AACGTT 1 cut(s) 534
PspN4I GGNNCC 1 cut(s) 21
PspPI GGNCC 1 cut(s) 20
PsuI RGATCY 2 cut(s) 91, 1189
RsaI GTAC 3 cut(s) 930, 1343, 1403
RsaNI GTAC 3 cut(s) 929, 1342, 1402
RseI CAYNNNNRTG 2 cut(s) 635, 861
SacI GAGCTC 2 cut(s) 617, 697
SaqAI TTAA 2 cut(s) 933, 1253
SatI GCNGC 1 cut(s) 1038
Sau96I GGNCC 1 cut(s) 20
ScaI AGTACT 3 cut(s) 930, 1343, 1403
SchI GAGTC 2 cut(s) 305, 1157
SduI GDGCHC 3 cut(s) 104, 617, 697
SfaNI GCATC 1 cut(s) 402
Sfr274I CTCGAG 1 cut(s) 1337
SinI GGWCC 1 cut(s) 20
SlaI CTCGAG 1 cut(s) 1337
SmiMI CAYNNNNRTG 2 cut(s) 635, 861
SmlI CTYRAG 3 cut(s) 262, 1283, 1337
SmoI CTYRAG 3 cut(s) 262, 1283, 1337
SphI GCATGC 2 cut(s) 804, 895
SseBI AGGCCT 1 cut(s) 169
SsiI CCGC 1 cut(s) 35
SspMI CTAG 6 cut(s) 369, 378, 884, 1208, 1236, 1437
SstI GAGCTC 2 cut(s) 617, 697
StuI AGGCCT 1 cut(s) 169
StyI CCWWGG 4 cut(s) 63, 338, 363, 1313
TaaI ACNGT 3 cut(s) 305, 520, 1411
TaiI ACGT 1 cut(s) 537
TaqI TCGA 8 cut(s) 12, 48, 387, 393, 567, 789, 1154, 1338
TatI WGTACW 3 cut(s) 928, 1341, 1401
TfiI GAWTC 3 cut(s) 277, 343, 422
Tru1I TTAA 2 cut(s) 933, 1253
Tru9I TTAA 2 cut(s) 933, 1253
TscAI CASTG 3 cut(s) 1056, 1416, 1429
TseI GCWGC 1 cut(s) 1037
TspDTI ATGAA 3 cut(s) 190, 435, 1345
TspGWI ACGGA 1 cut(s) 119
TspRI CASTG 3 cut(s) 1056, 1416, 1429
Van91I CCANNNNNTGG 1 cut(s) 811
VpaK11BI GGWCC 1 cut(s) 20
XapI RAATTY 5 cut(s) 783, 1123, 1174, 1249, 1384
XceI RCATGY 3 cut(s) 804, 895, 1217
XhoI CTCGAG 1 cut(s) 1337
XmnI GAANNNNTTC 2 cut(s) 591, 1352
XspI CTAG 6 cut(s) 369, 378, 884, 1208, 1236, 1437
ZrmI AGTACT 3 cut(s) 930, 1343, 1403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.