Encoded by
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2657 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2315 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1444, 1531 |
| AccI | GTMKAC | 5 cut(s) | 362, 844, 1396, 2322, 2770 |
| AccII | CGCG | 3 cut(s) | 373, 2099, 2728 |
| AccIII | TCCGGA | 2 cut(s) | 648, 2628 |
| AciI | CCGC | 8 cut(s) | 217, 267, 280, 1387, 1547, 2490, 2493, 2726 |
| AcoI | YGGCCR | 4 cut(s) | 81, 762, 800, 892 |
| AcsI | RAATTY | 4 cut(s) | 1161, 1627, 2054, 2661 |
| AcuI | CTGAAG | 2 cut(s) | 645, 1437 |
| AcyI | GRCGYC | 2 cut(s) | 1943, 2260 |
| AfaI | GTAC | 5 cut(s) | 724, 823, 1596, 2228, 2380 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 901, 1444, 1531, 2069, 2536, 2635 |
| AflIII | ACRYGT | 1 cut(s) | 1591 |
| AjiI | CACGTC | 1 cut(s) | 848 |
| AjnI | CCWGG | 4 cut(s) | 2113, 2472, 2641, 2671 |
| Alw21I | GWGCWC | 1 cut(s) | 1864 |
| Alw26I | GTCTC | 9 cut(s) | 239, 623, 760, 1187, 1676, 1718, 2456, 2691, 2877 |
| Ama87I | CYCGRG | 4 cut(s) | 344, 664, 1890, 2126 |
| Aor13HI | TCCGGA | 2 cut(s) | 648, 2628 |
| ApaI | GGGCCC | 1 cut(s) | 2579 |
| ApeKI | GCWGC | 5 cut(s) | 328, 351, 2496, 2597, 2600 |
| ApoI | RAATTY | 4 cut(s) | 1161, 1627, 2054, 2661 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 197 |
| AspLEI | GCGC | 5 cut(s) | 216, 351, 375, 1779, 2099 |
| AspS9I | GGNCC | 7 cut(s) | 417, 2111, 2304, 2551, 2575, 2576, 2885 |
| AvaI | CYCGRG | 4 cut(s) | 344, 664, 1890, 2126 |
| AvaII | GGWCC | 3 cut(s) | 417, 2111, 2304 |
| BaeGI | GKGCMC | 2 cut(s) | 242, 2579 |
| BalI | TGGCCA | 2 cut(s) | 764, 802 |
| BamHI | GGATCC | 3 cut(s) | 2625, 2638, 2668 |
| BanII | GRGCYC | 4 cut(s) | 1072, 1864, 1960, 2579 |
| BauI | CACGAG | 1 cut(s) | 107 |
| BbsI | GAAGAC | 5 cut(s) | 1287, 1836, 1938, 1980, 2199 |
| Bbv12I | GWGCWC | 1 cut(s) | 1864 |
| BbvCI | CCTCAGC | 1 cut(s) | 1373 |
| BbvI | GCAGC | 5 cut(s) | 340, 363, 2483, 2584, 2612 |
| BceAI | ACGGC | 4 cut(s) | 62, 796, 1956, 2899 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2107, 2141 |
| BciT130I | CCWGG | 4 cut(s) | 2115, 2474, 2643, 2673 |
| BcoDI | GTCTC | 9 cut(s) | 239, 623, 760, 1187, 1676, 1718, 2456, 2691, 2877 |
| BfaI | CTAG | 6 cut(s) | 323, 998, 1262, 1586, 1868, 2249 |
| BfmI | CTRYAG | 4 cut(s) | 705, 1348, 2497, 2598 |
| BfoI | RGCGCY | 1 cut(s) | 217 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2020 |
| BglII | AGATCT | 2 cut(s) | 377, 2438 |
| BisI | GCNGC | 9 cut(s) | 217, 329, 352, 1388, 2491, 2494, 2497, 2598, 2601 |
| BlpI | GCTNAGC | 1 cut(s) | 774 |
| BlsI | GCNGC | 9 cut(s) | 218, 330, 353, 1389, 2492, 2495, 2498, 2599, 2602 |
| Bme1390I | CCNGG | 4 cut(s) | 2115, 2474, 2643, 2673 |
| Bme18I | GGWCC | 3 cut(s) | 417, 2111, 2304 |
| BmeT110I | CYCGRG | 4 cut(s) | 344, 664, 1890, 2126 |
| BmgBI | CACGTC | 1 cut(s) | 848 |
| BmgT120I | GGNCC | 7 cut(s) | 417, 2111, 2304, 2551, 2575, 2576, 2885 |
| BmiI | GGNNCC | 7 cut(s) | 1959, 2448, 2577, 2627, 2640, 2670, 2887 |
| BmrFI | CCNGG | 4 cut(s) | 2115, 2474, 2643, 2673 |
| BmrI | ACTGGG | 1 cut(s) | 184 |
| BmuI | ACTGGG | 1 cut(s) | 184 |
| BpiI | GAAGAC | 5 cut(s) | 1287, 1836, 1938, 1980, 2199 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 338, 370, 2822, 2854 |
| BpmI | CTGGAG | 1 cut(s) | 1188 |
| Bpu10I | CCTNAGC | 4 cut(s) | 965, 1373, 2084, 2829 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 774 |
| BpuEI | CTTGAG | 4 cut(s) | 158, 512, 1607, 1700 |
| Bsa29I | ATCGAT | 1 cut(s) | 1819 |
| BsaHI | GRCGYC | 2 cut(s) | 1943, 2260 |
| BsaI | GGTCTC | 2 cut(s) | 760, 2456 |
| BsaJI | CCNNGG | 9 cut(s) | 78, 734, 759, 803, 1102, 1530, 1889, 2265, 2450 |
| BsaWI | WCCGGW | 4 cut(s) | 409, 648, 2465, 2628 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 896, 926, 1186, 1216, 2460, 2490 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 901, 1444, 1531, 2069, 2536, 2635 |
| Bse118I | RCCGGY | 1 cut(s) | 1972 |
| Bse1I | ACTGG | 4 cut(s) | 179, 196, 581, 1525 |
| Bse3DI | GCAATG | 1 cut(s) | 1275 |
| BseAI | TCCGGA | 2 cut(s) | 648, 2628 |
| BseBI | CCWGG | 4 cut(s) | 2115, 2474, 2643, 2673 |
| BseCI | ATCGAT | 1 cut(s) | 1819 |
| BseDI | CCNNGG | 9 cut(s) | 78, 734, 759, 803, 1102, 1530, 1889, 2265, 2450 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 901, 1444, 1531, 2069, 2536, 2635 |
| BseMI | GCAATG | 1 cut(s) | 1275 |
| BseNI | ACTGG | 4 cut(s) | 179, 196, 581, 1525 |
| BseRI | GAGGAG | 1 cut(s) | 2173 |
| BseSI | GKGCMC | 2 cut(s) | 242, 2579 |
| BseXI | GCAGC | 5 cut(s) | 340, 363, 2483, 2584, 2612 |
| BsgI | GTGCAG | 3 cut(s) | 347, 1891, 2476 |
| Bsh1236I | CGCG | 3 cut(s) | 373, 2099, 2728 |
| BshVI | ATCGAT | 1 cut(s) | 1819 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1864 |
| BsiHKCI | CYCGRG | 4 cut(s) | 344, 664, 1890, 2126 |
| BsiSI | CCGG | 8 cut(s) | 386, 410, 649, 895, 1550, 1973, 2466, 2629 |
| BslFI | GGGAC | 1 cut(s) | 2247 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 901, 1444, 1531, 2069, 2536, 2635 |
| BsmAI | GTCTC | 9 cut(s) | 239, 623, 760, 1187, 1676, 1718, 2456, 2691, 2877 |
| BsmBI | CGTCTC | 2 cut(s) | 1718, 2691 |
| BsmFI | GGGAC | 1 cut(s) | 2247 |
| Bso31I | GGTCTC | 2 cut(s) | 760, 2456 |
| BsoBI | CYCGRG | 4 cut(s) | 344, 664, 1890, 2126 |
| Bsp120I | GGGCCC | 1 cut(s) | 2575 |
| Bsp1286I | GDGCHC | 5 cut(s) | 242, 1072, 1864, 1960, 2579 |
| Bsp13I | TCCGGA | 2 cut(s) | 648, 2628 |
| Bsp1407I | TGTACA | 1 cut(s) | 722 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 774 |
| BspACI | CCGC | 8 cut(s) | 217, 267, 280, 1387, 1547, 2490, 2493, 2726 |
| BspDI | ATCGAT | 1 cut(s) | 1819 |
| BspEI | TCCGGA | 2 cut(s) | 648, 2628 |
| BspFNI | CGCG | 3 cut(s) | 373, 2099, 2728 |
| BspHI | TCATGA | 1 cut(s) | 1801 |
| BspLI | GGNNCC | 7 cut(s) | 1959, 2448, 2577, 2627, 2640, 2670, 2887 |
| BspMAI | CTGCAG | 3 cut(s) | 1352, 2501, 2602 |
| BspTNI | GGTCTC | 2 cut(s) | 760, 2456 |
| BsrDI | GCAATG | 1 cut(s) | 1275 |
| BsrFI | RCCGGY | 1 cut(s) | 1972 |
| BsrGI | TGTACA | 1 cut(s) | 722 |
| BsrI | ACTGG | 4 cut(s) | 179, 196, 581, 1525 |
| BssAI | RCCGGY | 1 cut(s) | 1972 |
| BssECI | CCNNGG | 9 cut(s) | 78, 734, 759, 803, 1102, 1530, 1889, 2265, 2450 |
| BssNAI | GTATAC | 1 cut(s) | 1397 |
| BssNI | GRCGYC | 2 cut(s) | 1943, 2260 |
| BssSI | CACGAG | 1 cut(s) | 107 |
| BssT1I | CCWWGG | 5 cut(s) | 734, 759, 803, 1530, 2265 |
| Bst1107I | GTATAC | 1 cut(s) | 1397 |
| Bst2BI | CACGAG | 1 cut(s) | 107 |
| Bst2UI | CCWGG | 4 cut(s) | 2115, 2474, 2643, 2673 |
| Bst4CI | ACNGT | 9 cut(s) | 727, 919, 939, 1005, 1699, 1799, 1984, 2383, 2482 |
| Bst6I | CTCTTC | 4 cut(s) | 554, 621, 1305, 1467 |
| BstACI | GRCGYC | 2 cut(s) | 1943, 2260 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 334, 1517 |
| BstAUI | TGTACA | 1 cut(s) | 722 |
| BstC8I | GCNNGC | 6 cut(s) | 155, 771, 1180, 2081, 2329, 2518 |
| BstDSI | CCRYGG | 2 cut(s) | 78, 2450 |
| BstFNI | CGCG | 3 cut(s) | 373, 2099, 2728 |
| BstH2I | RGCGCY | 1 cut(s) | 217 |
| BstHHI | GCGC | 5 cut(s) | 216, 351, 375, 1779, 2099 |
| BstMAI | GTCTC | 9 cut(s) | 239, 623, 760, 1187, 1676, 1718, 2456, 2691, 2877 |
| BstNI | CCWGG | 4 cut(s) | 2115, 2474, 2643, 2673 |
| BstNSI | RCATGY | 4 cut(s) | 286, 855, 1182, 1595 |
| BstSCI | CCNGG | 4 cut(s) | 2113, 2472, 2641, 2671 |
| BstSFI | CTRYAG | 4 cut(s) | 705, 1348, 2497, 2598 |
| BstSLI | GKGCMC | 2 cut(s) | 242, 2579 |
| BstUI | CGCG | 3 cut(s) | 373, 2099, 2728 |
| BstV1I | GCAGC | 5 cut(s) | 340, 363, 2483, 2584, 2612 |
| BstV2I | GAAGAC | 5 cut(s) | 1287, 1836, 1938, 1980, 2199 |
| BstX2I | RGATCY | 9 cut(s) | 25, 377, 907, 1567, 2287, 2438, 2625, 2638, 2668 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 52, 79, 2896 |
| BstYI | RGATCY | 9 cut(s) | 25, 377, 907, 1567, 2287, 2438, 2625, 2638, 2668 |
| BstZ17I | GTATAC | 1 cut(s) | 1397 |
| Bsu15I | ATCGAT | 1 cut(s) | 1819 |
| BsuTUI | ATCGAT | 1 cut(s) | 1819 |
| BtgI | CCRYGG | 2 cut(s) | 78, 2450 |
| BtgZI | GCGATG | 1 cut(s) | 2882 |
| BtrI | CACGTC | 1 cut(s) | 848 |
| BtsIMutI | CAGTG | 4 cut(s) | 172, 240, 732, 924 |
| Cac8I | GCNNGC | 6 cut(s) | 155, 771, 1180, 2081, 2329, 2518 |
| CciI | TCATGA | 1 cut(s) | 1801 |
| CfoI | GCGC | 5 cut(s) | 216, 351, 375, 1779, 2099 |
| Cfr10I | RCCGGY | 1 cut(s) | 1972 |
| Cfr13I | GGNCC | 7 cut(s) | 417, 2111, 2304, 2551, 2575, 2576, 2885 |
| ClaI | ATCGAT | 1 cut(s) | 1819 |
| CseI | GACGC | 6 cut(s) | 379, 1700, 1871, 1932, 2249, 2333 |
| Csp6I | GTAC | 5 cut(s) | 723, 822, 1595, 2227, 2379 |
| CviQI | GTAC | 5 cut(s) | 723, 822, 1595, 2227, 2379 |
| DraI | TTTAAA | 1 cut(s) | 1632 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2315 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2315 |
| EaeI | YGGCCR | 4 cut(s) | 81, 762, 800, 892 |
| Eam1104I | CTCTTC | 4 cut(s) | 554, 621, 1305, 1467 |
| EarI | CTCTTC | 4 cut(s) | 554, 621, 1305, 1467 |
| EciI | GGCGGA | 1 cut(s) | 1536 |
| Ecl136II | GAGCTC | 1 cut(s) | 1862 |
| Eco130I | CCWWGG | 5 cut(s) | 734, 759, 803, 1530, 2265 |
| Eco147I | AGGCCT | 2 cut(s) | 565, 2472 |
| Eco24I | GRGCYC | 4 cut(s) | 1072, 1864, 1960, 2579 |
| Eco31I | GGTCTC | 2 cut(s) | 760, 2456 |
| Eco32I | GATATC | 2 cut(s) | 1110, 1210 |
| Eco47I | GGWCC | 3 cut(s) | 417, 2111, 2304 |
| Eco53kI | GAGCTC | 1 cut(s) | 1862 |
| Eco57I | CTGAAG | 2 cut(s) | 645, 1437 |
| Eco88I | CYCGRG | 4 cut(s) | 344, 664, 1890, 2126 |
| EcoICRI | GAGCTC | 1 cut(s) | 1862 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2576 |
| EcoRII | CCWGG | 4 cut(s) | 2113, 2472, 2641, 2671 |
| EcoRV | GATATC | 2 cut(s) | 1110, 1210 |
| EcoT14I | CCWWGG | 5 cut(s) | 734, 759, 803, 1530, 2265 |
| EcoT22I | ATGCAT | 1 cut(s) | 697 |
| EcoT38I | GRGCYC | 4 cut(s) | 1072, 1864, 1960, 2579 |
| ErhI | CCWWGG | 5 cut(s) | 734, 759, 803, 1530, 2265 |
| Esp3I | CGTCTC | 2 cut(s) | 1718, 2691 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 120, 152, 218, 250 |
| FaqI | GGGAC | 1 cut(s) | 2247 |
| FauI | CCCGC | 1 cut(s) | 2733 |
| FauNDI | CATATG | 1 cut(s) | 747 |
| FblI | GTMKAC | 5 cut(s) | 362, 844, 1396, 2322, 2770 |
| Fnu4HI | GCNGC | 9 cut(s) | 217, 329, 352, 1388, 2491, 2494, 2497, 2598, 2601 |
| FriOI | GRGCYC | 4 cut(s) | 1072, 1864, 1960, 2579 |
| Fsp4HI | GCNGC | 9 cut(s) | 217, 329, 352, 1388, 2491, 2494, 2497, 2598, 2601 |
| FspBI | CTAG | 6 cut(s) | 323, 998, 1262, 1586, 1868, 2249 |
| GlaI | GCGC | 5 cut(s) | 215, 350, 374, 1778, 2098 |
| GluI | GCNGC | 9 cut(s) | 217, 329, 352, 1388, 2491, 2494, 2497, 2598, 2601 |
| GsuI | CTGGAG | 1 cut(s) | 1188 |
| HaeII | RGCGCY | 1 cut(s) | 217 |
| HapII | CCGG | 8 cut(s) | 386, 410, 649, 895, 1550, 1973, 2466, 2629 |
| HgaI | GACGC | 6 cut(s) | 379, 1700, 1871, 1932, 2249, 2333 |
| HhaI | GCGC | 5 cut(s) | 216, 351, 375, 1779, 2099 |
| Hin1I | GRCGYC | 2 cut(s) | 1943, 2260 |
| Hin6I | GCGC | 5 cut(s) | 214, 349, 373, 1777, 2097 |
| HinP1I | GCGC | 5 cut(s) | 214, 349, 373, 1777, 2097 |
| HincII | GTYRAC | 4 cut(s) | 363, 915, 2323, 2589 |
| HindII | GTYRAC | 4 cut(s) | 363, 915, 2323, 2589 |
| HindIII | AAGCTT | 3 cut(s) | 99, 776, 1145 |
| HpaII | CCGG | 8 cut(s) | 386, 410, 649, 895, 1550, 1973, 2466, 2629 |
| Hpy99I | CGWCG | 2 cut(s) | 2324, 2327 |
| HpyAV | CCTTC | 7 cut(s) | 348, 1140, 1331, 1531, 1750, 2016, 2369 |
| HpyCH4III | ACNGT | 9 cut(s) | 727, 919, 939, 1005, 1699, 1799, 1984, 2383, 2482 |
| HpyCH4IV | ACGT | 2 cut(s) | 847, 2120 |
| HpySE526I | ACGT | 2 cut(s) | 847, 2120 |
| Hsp92I | GRCGYC | 2 cut(s) | 1943, 2260 |
| HspAI | GCGC | 5 cut(s) | 214, 349, 373, 1777, 2097 |
| Kpn2I | TCCGGA | 2 cut(s) | 648, 2628 |
| LmnI | GCTCC | 7 cut(s) | 178, 211, 298, 359, 456, 1963, 2094 |
| Lsp1109I | GCAGC | 5 cut(s) | 340, 363, 2483, 2584, 2612 |
| MaeI | CTAG | 6 cut(s) | 323, 998, 1262, 1586, 1868, 2249 |
| MaeII | ACGT | 2 cut(s) | 847, 2120 |
| MaeIII | GTNAC | 6 cut(s) | 405, 598, 1253, 1883, 2476, 2900 |
| MflI | RGATCY | 9 cut(s) | 25, 377, 907, 1567, 2287, 2438, 2625, 2638, 2668 |
| MhlI | GDGCHC | 5 cut(s) | 242, 1072, 1864, 1960, 2579 |
| MlsI | TGGCCA | 2 cut(s) | 764, 802 |
| MluNI | TGGCCA | 2 cut(s) | 764, 802 |
| MlyI | GAGTC | 4 cut(s) | 368, 403, 2325, 2776 |
| MmeI | TCCRAC | 1 cut(s) | 2331 |
| Mox20I | TGGCCA | 2 cut(s) | 764, 802 |
| Mph1103I | ATGCAT | 1 cut(s) | 697 |
| MroI | TCCGGA | 2 cut(s) | 648, 2628 |
| MroXI | GAANNNNTTC | 1 cut(s) | 197 |
| MscI | TGGCCA | 2 cut(s) | 764, 802 |
| MseI | TTAA | 1 cut(s) | 1631 |
| MslI | CAYNNNNRTG | 2 cut(s) | 412, 2894 |
| Msp20I | TGGCCA | 2 cut(s) | 764, 802 |
| MspA1I | CMGCKG | 3 cut(s) | 331, 623, 1372 |
| MspI | CCGG | 8 cut(s) | 386, 410, 649, 895, 1550, 1973, 2466, 2629 |
| MspR9I | CCNGG | 4 cut(s) | 2115, 2474, 2643, 2673 |
| MvaI | CCWGG | 4 cut(s) | 2115, 2474, 2643, 2673 |
| MvnI | CGCG | 3 cut(s) | 373, 2099, 2728 |
| NdeI | CATATG | 1 cut(s) | 747 |
| NlaIV | GGNNCC | 7 cut(s) | 1959, 2448, 2577, 2627, 2640, 2670, 2887 |
| NmeAIII | GCCGAG | 2 cut(s) | 995, 2236 |
| NmuCI | GTSAC | 4 cut(s) | 405, 1883, 2476, 2900 |
| NsiI | ATGCAT | 1 cut(s) | 697 |
| NspI | RCATGY | 4 cut(s) | 286, 855, 1182, 1595 |
| PaeI | GCATGC | 1 cut(s) | 1182 |
| PaeR7I | CTCGAG | 1 cut(s) | 2126 |
| PagI | TCATGA | 1 cut(s) | 1801 |
| PceI | AGGCCT | 2 cut(s) | 565, 2472 |
| PciI | ACATGT | 1 cut(s) | 1591 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2174 |
| PdmI | GAANNNNTTC | 1 cut(s) | 197 |
| PfeI | GAWTC | 6 cut(s) | 545, 673, 791, 991, 1225, 2348 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1444, 1531 |
| PkrI | GCNGC | 9 cut(s) | 218, 330, 353, 1389, 2492, 2495, 2498, 2599, 2602 |
| PleI | GAGTC | 4 cut(s) | 367, 402, 2324, 2775 |
| PpsI | GAGTC | 4 cut(s) | 367, 402, 2324, 2775 |
| PscI | ACATGT | 1 cut(s) | 1591 |
| PsiI | TTATAA | 1 cut(s) | 2657 |
| Psp124BI | GAGCTC | 1 cut(s) | 1864 |
| Psp6I | CCWGG | 4 cut(s) | 2113, 2472, 2641, 2671 |
| PspGI | CCWGG | 4 cut(s) | 2113, 2472, 2641, 2671 |
| PspN4I | GGNNCC | 7 cut(s) | 1959, 2448, 2577, 2627, 2640, 2670, 2887 |
| PspOMI | GGGCCC | 1 cut(s) | 2575 |
| PspPI | GGNCC | 7 cut(s) | 417, 2111, 2304, 2551, 2575, 2576, 2885 |
| PspXI | VCTCGAGB | 1 cut(s) | 2126 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2124, 2156 |
| PstI | CTGCAG | 3 cut(s) | 1352, 2501, 2602 |
| PsuI | RGATCY | 9 cut(s) | 25, 377, 907, 1567, 2287, 2438, 2625, 2638, 2668 |
| PvuII | CAGCTG | 3 cut(s) | 331, 623, 1372 |
| RsaI | GTAC | 5 cut(s) | 724, 823, 1596, 2228, 2380 |
| RsaNI | GTAC | 5 cut(s) | 723, 822, 1595, 2227, 2379 |
| RseI | CAYNNNNRTG | 2 cut(s) | 412, 2894 |
| SacI | GAGCTC | 1 cut(s) | 1864 |
| SalI | GTCGAC | 2 cut(s) | 361, 2321 |
| SaqAI | TTAA | 1 cut(s) | 1631 |
| SatI | GCNGC | 9 cut(s) | 217, 329, 352, 1388, 2491, 2494, 2497, 2598, 2601 |
| Sau96I | GGNCC | 7 cut(s) | 417, 2111, 2304, 2551, 2575, 2576, 2885 |
| SchI | GAGTC | 4 cut(s) | 368, 403, 2325, 2776 |
| ScrFI | CCNGG | 4 cut(s) | 2115, 2474, 2643, 2673 |
| SduI | GDGCHC | 5 cut(s) | 242, 1072, 1864, 1960, 2579 |
| SfcI | CTRYAG | 4 cut(s) | 705, 1348, 2497, 2598 |
| Sfr274I | CTCGAG | 1 cut(s) | 2126 |
| SgrDI | CGTCGACG | 1 cut(s) | 2321 |
| SinI | GGWCC | 3 cut(s) | 417, 2111, 2304 |
| SlaI | CTCGAG | 1 cut(s) | 2126 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 412, 2894 |
| SmlI | CTYRAG | 5 cut(s) | 137, 491, 1622, 1715, 2126 |
| SmoI | CTYRAG | 5 cut(s) | 137, 491, 1622, 1715, 2126 |
| SphI | GCATGC | 1 cut(s) | 1182 |
| SseBI | AGGCCT | 2 cut(s) | 565, 2472 |
| SsiI | CCGC | 8 cut(s) | 217, 267, 280, 1387, 1547, 2490, 2493, 2726 |
| SspI | AATATT | 3 cut(s) | 534, 2793, 2913 |
| SspMI | CTAG | 6 cut(s) | 323, 998, 1262, 1586, 1868, 2249 |
| SstI | GAGCTC | 1 cut(s) | 1864 |
| StuI | AGGCCT | 2 cut(s) | 565, 2472 |
| StyD4I | CCNGG | 4 cut(s) | 2113, 2472, 2641, 2671 |
| StyI | CCWWGG | 5 cut(s) | 734, 759, 803, 1530, 2265 |
| TaaI | ACNGT | 9 cut(s) | 727, 919, 939, 1005, 1699, 1799, 1984, 2383, 2482 |
| TaiI | ACGT | 2 cut(s) | 850, 2123 |
| TatI | WGTACW | 2 cut(s) | 722, 821 |
| TauI | GCSGC | 4 cut(s) | 219, 1390, 2493, 2496 |
| TfiI | GAWTC | 6 cut(s) | 545, 673, 791, 991, 1225, 2348 |
| Tru1I | TTAA | 1 cut(s) | 1631 |
| Tru9I | TTAA | 1 cut(s) | 1631 |
| TscAI | CASTG | 4 cut(s) | 179, 247, 732, 924 |
| TseFI | GTSAC | 4 cut(s) | 405, 1883, 2476, 2900 |
| TseI | GCWGC | 5 cut(s) | 328, 351, 2496, 2597, 2600 |
| Tsp45I | GTSAC | 4 cut(s) | 405, 1883, 2476, 2900 |
| TspDTI | ATGAA | 4 cut(s) | 28, 498, 1470, 1842 |
| TspGWI | ACGGA | 3 cut(s) | 1907, 2133, 2439 |
| TspRI | CASTG | 4 cut(s) | 179, 247, 732, 924 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1444, 1531 |
| VpaK11BI | GGWCC | 3 cut(s) | 417, 2111, 2304 |
| XapI | RAATTY | 4 cut(s) | 1161, 1627, 2054, 2661 |
| XbaI | TCTAGA | 1 cut(s) | 2248 |
| XceI | RCATGY | 4 cut(s) | 286, 855, 1182, 1595 |
| XhoI | CTCGAG | 1 cut(s) | 2126 |
| XmiI | GTMKAC | 5 cut(s) | 362, 844, 1396, 2322, 2770 |
| XmnI | GAANNNNTTC | 1 cut(s) | 197 |
| XspI | CTAG | 6 cut(s) | 323, 998, 1262, 1586, 1868, 2249 |
| Zsp2I | ATGCAT | 1 cut(s) | 697 |