Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017895.1

Orthogroup ID

OG0000917

Physical Location & Seq

Genomic Coordinates Reverse (-)

27330 .. 27767

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017895.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atgttgatctccttggctagagaggctaagctgttcgacttcgatcccaaatggccaatgatgccatttggttctatatcaacttgtaggcgttcatgtttagtttctaaggagggtaagtcaataactcctcatggtgatgatcaattgaaaaatctattgacagtattcaatgtaaacgttaaatatcttgatttgaaacaagaatggctcgacaagttgaagagggttgaagttcttcactttggacggtggcagagctcccctaaatatcacattgaagtggatcagaaaacatttgatggttcacaagctgtattatccaactgcaaaatagaaaacaagacccaattatccaactgcaaaatcgaaaacaaaatccaagtacaaagtcgggactcgggaggagattacaatcttaaatcccaaatcgaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

145

Amino Acids

16.72

Weight (kDa)

8.87

Isoelectric Point (pI)

61.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000917)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g29201 FvH4_6g29201 FvH4_6g29201
malus_domestica	MD09G1222600.v1.1
prunus_persica	Prupe.3G175600_v2.0.a1 Prupe.3G175600_v2.0.a1 Prupe.3G176100_v2.0.a1 Prupe.4G057900_v2.0.a1
pyrus_communis	pycom808g00780
rosa_chinensis	RchiOBHm_Chr2g0111461 RchiOBHm_Chr2g0112821 RchiOBHm_Chr2g0151861 RchiOBHm_Chr2g0152221
rosa_laevigata	RLG00000018013 RLG00000018014 RLG00000020584 RLG00000020617
rosa_multiflora	Rmu_co8270923.1_g000001 Rmu_sc0001687.1_g000009 Rmu_sc0002351.1_g000014 Rmu_sc0003043.1_g000010 Rmu_sc0004286.1_g000015 Rmu_sc0005294.1_g000017 Rmu_sc0005791.1_g000005 Rmu_sc0006226.1_g000001 Rmu_sc0008578.1_g000006 Rmu_sc0017895.1_g000007 Rmu_sc0023925.1_g000005 Rmu_ssc0000400.1_g000039
rosa_roxburghii	Rroxscaffold_2G00096130 Rroxscaffold_2G00131120 Rroxscaffold_4G00302580 Rroxscaffold_7G00189350
rosa_rugosa	Rorug02G0174500 Rorug02G0182800 Rorug02G0429200 Rorug02G0429600.1 Rorug02G0431300 Rorug02G0431400 Rorug02G0431500
rosa_samantha	Rh2AG227200 Rh2AG237600 Rh2AG490200 Rh2AG490400 Rh2AG492800 Rh2BG239000 Rh2BG250300 Rh2BG502600 Rh2BG505400 Rh2CG230800 Rh2CG241400 Rh2CG476500 Rh2CG476800 Rh2CG479200 Rh2DG234800 Rh2DG245100 Rh2DG513800 Rh2DG516600
rosa_wichuraiana	Rw0G018020 Rw0G020240 Rw2G018600 Rw2G040180 Rw2G040300 Rw2G040500 Rw2G040520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	180
AclWI	GGATC	2 cut(s)	38, 294
AcoI	YGGCCR	1 cut(s)	53
AfaI	GTAC	1 cut(s)	387
AgsI	TTSAA	6 cut(s)	151, 172, 199, 223, 233, 281
AluBI	AGCT	3 cut(s)	31, 261, 314
AluI	AGCT	3 cut(s)	31, 261, 314
Alw21I	GWGCWC	1 cut(s)	263
AlwI	GGATC	2 cut(s)	38, 294
Ama87I	CYCGRG	1 cut(s)	400
AoxI	GGCC	1 cut(s)	53
Asp700I	GAANNNNTTC	1 cut(s)	237
AsuHPI	GGTGA	1 cut(s)	149
AvaI	CYCGRG	1 cut(s)	400
BalI	TGGCCA	1 cut(s)	55
BanII	GRGCYC	1 cut(s)	263
Bbv12I	GWGCWC	1 cut(s)	263
BccI	CCATC	1 cut(s)	296
BclI	TGATCA	1 cut(s)	142
BfaI	CTAG	1 cut(s)	18
BlpI	GCTNAGC	1 cut(s)	27
BmeT110I	CYCGRG	1 cut(s)	400
BmsI	GCATC	1 cut(s)	51
Bpu1102I	GCTNAGC	1 cut(s)	27
BsaBI	GATNNNNATC	1 cut(s)	414
BsaJI	CCNNGG	1 cut(s)	12
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bse8I	GATNNNNATC	1 cut(s)	414
BseDI	CCNNGG	1 cut(s)	12
BseJI	GATNNNNATC	1 cut(s)	414
BseRI	GAGGAG	2 cut(s)	120, 420
BshFI	GGCC	1 cut(s)	55
BsiHKAI	GWGCWC	1 cut(s)	263
BsiHKCI	CYCGRG	1 cut(s)	400
BslFI	GGGAC	1 cut(s)	410
BsmFI	GGGAC	1 cut(s)	410
BsnI	GGCC	1 cut(s)	55
BsoBI	CYCGRG	1 cut(s)	400
Bsp1286I	GDGCHC	1 cut(s)	263
Bsp143I	GATC	4 cut(s)	6, 43, 142, 286
Bsp1720I	GCTNAGC	1 cut(s)	27
BspANI	GGCC	1 cut(s)	55
BspPI	GGATC	2 cut(s)	38, 294
BssECI	CCNNGG	1 cut(s)	12
BssMI	GATC	4 cut(s)	6, 43, 142, 286
BssT1I	CCWWGG	1 cut(s)	12
Bst4CI	ACNGT	2 cut(s)	166, 252
Bst6I	CTCTTC	1 cut(s)	218
BstDEI	CTNAG	2 cut(s)	27, 108
BstKTI	GATC	4 cut(s)	9, 46, 145, 289
BstMBI	GATC	4 cut(s)	6, 43, 142, 286
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 61
BsuRI	GGCC	1 cut(s)	55
Csp6I	GTAC	1 cut(s)	386
CviAII	CATG	2 cut(s)	96, 134
CviJI	RGCY	7 cut(s)	17, 26, 31, 55, 211, 261, 314
CviKI_1	RGCY	7 cut(s)	17, 26, 31, 55, 211, 261, 314
CviQI	GTAC	1 cut(s)	386
DdeI	CTNAG	2 cut(s)	27, 108
DpnI	GATC	4 cut(s)	8, 45, 144, 288
DpnII	GATC	4 cut(s)	6, 43, 142, 286
EaeI	YGGCCR	1 cut(s)	53
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
Ecl136II	GAGCTC	1 cut(s)	261
Eco130I	CCWWGG	1 cut(s)	12
Eco24I	GRGCYC	1 cut(s)	263
Eco53kI	GAGCTC	1 cut(s)	261
Eco88I	CYCGRG	1 cut(s)	400
EcoICRI	GAGCTC	1 cut(s)	261
EcoT14I	CCWWGG	1 cut(s)	12
EcoT38I	GRGCYC	1 cut(s)	263
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	2 cut(s)	99, 137
FaiI	YATR	3 cut(s)	77, 97, 135
FaqI	GGGAC	1 cut(s)	410
FatI	CATG	2 cut(s)	95, 133
FbaI	TGATCA	1 cut(s)	142
FriOI	GRGCYC	1 cut(s)	263
FspBI	CTAG	1 cut(s)	18
HaeIII	GGCC	1 cut(s)	55
Hin1II	CATG	2 cut(s)	99, 137
HinfI	GANTC	1 cut(s)	398
HphI	GGTGA	1 cut(s)	149
Hpy166II	GTNNAC	2 cut(s)	178, 308
Hpy188I	TCNGA	1 cut(s)	291
Hpy188III	TCNNGA	3 cut(s)	191, 395, 402
Hpy8I	GTNNAC	2 cut(s)	178, 308
HpyCH4III	ACNGT	2 cut(s)	166, 252
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	2 cut(s)	330, 363
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 61
HpyF3I	CTNAG	2 cut(s)	27, 108
HpySE526I	ACGT	1 cut(s)	180
Hsp92II	CATG	2 cut(s)	99, 137
Ksp22I	TGATCA	1 cut(s)	142
Kzo9I	GATC	4 cut(s)	6, 43, 142, 286
LmnI	GCTCC	1 cut(s)	266
LweI	GCATC	1 cut(s)	51
MaeI	CTAG	1 cut(s)	18
MaeII	ACGT	1 cut(s)	180
MalI	GATC	4 cut(s)	8, 45, 144, 288
MboI	GATC	4 cut(s)	6, 43, 142, 286
MboII	GAAGA	2 cut(s)	230, 235
MfeI	CAATTG	1 cut(s)	146
MhlI	GDGCHC	1 cut(s)	263
MlsI	TGGCCA	1 cut(s)	55
MluCI	AATT	2 cut(s)	146, 350
MluNI	TGGCCA	1 cut(s)	55
MlyI	GAGTC	1 cut(s)	392
MmeI	TCCRAC	2 cut(s)	348, 381
MnlI	CCTC	5 cut(s)	16, 106, 141, 219, 398
Mox20I	TGGCCA	1 cut(s)	55
MroXI	GAANNNNTTC	1 cut(s)	237
MscI	TGGCCA	1 cut(s)	55
MseI	TTAA	2 cut(s)	183, 420
MslI	CAYNNNNRTG	2 cut(s)	138, 281
Msp20I	TGGCCA	1 cut(s)	55
MunI	CAATTG	1 cut(s)	146
MwoI	GCNNNNNNNGC	2 cut(s)	23, 61
NdeII	GATC	4 cut(s)	6, 43, 142, 286
NlaIII	CATG	2 cut(s)	99, 137
PdmI	GAANNNNTTC	1 cut(s)	237
PleI	GAGTC	1 cut(s)	392
PpsI	GAGTC	1 cut(s)	392
Psp124BI	GAGCTC	1 cut(s)	263
Psp1406I	AACGTT	1 cut(s)	180
RsaI	GTAC	1 cut(s)	387
RsaNI	GTAC	1 cut(s)	386
RseI	CAYNNNNRTG	2 cut(s)	138, 281
SacI	GAGCTC	1 cut(s)	263
SaqAI	TTAA	2 cut(s)	183, 420
Sau3AI	GATC	4 cut(s)	6, 43, 142, 286
SchI	GAGTC	1 cut(s)	392
SduI	GDGCHC	1 cut(s)	263
SetI	ASST	4 cut(s)	33, 183, 263, 316
SfaNI	GCATC	1 cut(s)	51
SmiMI	CAYNNNNRTG	2 cut(s)	138, 281
Sse9I	AATT	2 cut(s)	146, 350
SspMI	CTAG	1 cut(s)	18
SstI	GAGCTC	1 cut(s)	263
StyI	CCWWGG	1 cut(s)	12
TaaI	ACNGT	2 cut(s)	166, 252
TaiI	ACGT	1 cut(s)	183
TaqI	TCGA	5 cut(s)	36, 42, 213, 369, 432
TasI	AATT	2 cut(s)	146, 350
TatI	WGTACW	1 cut(s)	385
Tru1I	TTAA	2 cut(s)	183, 420
Tru9I	TTAA	2 cut(s)	183, 420
TspDTI	ATGAA	1 cut(s)	84
XmnI	GAANNNNTTC	1 cut(s)	237
XspI	CTAG	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.