Rmu_sc0002351.1_g000014

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002351.1
OG0000917
Physical Location & Seq
Forward (+)
38296 .. 39840
1545 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002351.1_g000014.1.cds

Sequence Viewer

Length: 1545 bp
atggcaaattccgaggcggcgtcgggtgatccacctgaggaaatatcacaagatcagcggaaactgagcgcggaggaaattttcgataaaagtgaggccatggccaacataaggaggagttatggagatcttcggggcacggaattgaaggtctgtctactttctttctcaatcttccctgagggttctgagataagaaggaggcctctaatttactggtggatcggcgagggcttcatcacggctaccaaagagaagacagcagaggagataggagaagacatctttgcaaaactcttgagaaaggacttgattcaaccagctccaggtgagtccaactgtgaattacttgtcaaaaattgttgcgttcacccttggattcgtcgtatgttgatctccttggctagagaggctaagctgttcgacttcgatcccaaatggccaatgttgccatctggttctatatcgacctgtaggcgttcatgtttagtttctaatgagaaaaagccaaatcctgaagaaaagctaaatcctcaggataagccaattcctgaggaaaacccaaatcctcaggataagccaaattctcgtgatgttgatcaatggaaacaaaatctattgacagttttcaatgtaaacgttcaatatcttgatttgaaacaagaatggctggacaagttgaagagggttgaagtgcttcactttggacgctggcagagcgaccccaaatatcacattgaagtggatcagaaaacatttgatggttcacaagctgtatcgtttctaaatggtttgggagctcagaagcacttgaagtatcttagcctcagaggaatatcaagaattagtgaactccctgcttctattcgtagtcttatcagccttgaaattctcgatctgagagcatgccatgacttggagaggttgccttcagacatctcatcattgaagaagctcacgcatttggatgtatcagagtgttacttactagaaggcatgcccaaagggcttcacaaactttcttccctgcaagtactaaaaggttttctgataggatcacaggaaaaaactcccaccaaacttggtgaacttgcgacattgaagaagctaaggaggctcagcatacacattgggaatggggctgcaattcaagcaggggatttcaaaaagttgaaagatatgtcatctcttcgctacctgaaagtatcatggggagtggtttctaaaaatttgacagagggtattgaagatgagccctcgaaattcttgtttccagagaatttagaaaaattggatcttcaaggctttcccctagcacatgcaccagaagggttgaagcctagcaaactgaaaaatttaaagaagctctatataaggggtggggaacttgagagcttggatcatggggaaaatgagccatggaaagtggaaatcttgcgtctcgagtacttgaagaagttcataaactcagaagacgaagtgaagagaaattttcctcatcggaagtactggacagtgaagaacctcagtaaagctgaaggctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

514

Amino Acids

58.67

Weight (kDa)

8.53

Isoelectric Point (pI)

52.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 916
AccI GTMKAC 1 cut(s) 157
AccII CGCG 1 cut(s) 71
AciI CCGC 3 cut(s) 17, 58, 71
AclI AACGTT 1 cut(s) 639
AclWI GGATC 7 cut(s) 23, 230, 425, 753, 1063, 1302, 1407
AcoI YGGCCR 2 cut(s) 102, 440
AcsI RAATTY 9 cut(s) 7, 78, 583, 888, 1228, 1262, 1279, 1354, 1489
AcuI CTGAAG 2 cut(s) 537, 915
AcyI GRCGYC 1 cut(s) 20
AfaI GTAC 3 cut(s) 1035, 1448, 1508
AfiI CCNNNNNNNGG 3 cut(s) 111, 326, 916
AjnI CCWGG 1 cut(s) 325
Alw21I GWGCWC 1 cut(s) 802
Alw26I GTCTC 1 cut(s) 1445
AlwI GGATC 7 cut(s) 23, 230, 425, 753, 1063, 1302, 1407
Ama87I CYCGRG 1 cut(s) 1442
AoxI GGCC 4 cut(s) 96, 102, 203, 440
ApeKI GCWGC 1 cut(s) 1142
ApoI RAATTY 9 cut(s) 7, 78, 583, 888, 1228, 1262, 1279, 1354, 1489
Asp700I GAANNNNTTC 2 cut(s) 696, 1457
AspLEI GCGC 1 cut(s) 71
AsuHPI GGTGA 4 cut(s) 38, 341, 362, 1097
AvaI CYCGRG 1 cut(s) 1442
AxyI CCTNAGG 5 cut(s) 36, 180, 534, 552, 570
BaeGI GKGCMC 1 cut(s) 140
BalI TGGCCA 2 cut(s) 104, 442
BanII GRGCYC 2 cut(s) 802, 1257
BauI CACGAG 1 cut(s) 588
BbsI GAAGAC 3 cut(s) 263, 285, 1479
Bbv12I GWGCWC 1 cut(s) 802
BbvI GCAGC 1 cut(s) 1129
BccI CCATC 2 cut(s) 460, 755
BceAI ACGGC 1 cut(s) 258
BciT130I CCWGG 1 cut(s) 327
BclI TGATCA 1 cut(s) 598
BcoDI GTCTC 1 cut(s) 1445
BfaI CTAG 5 cut(s) 405, 989, 1313, 1341, 1543
BfmI CTRYAG 1 cut(s) 472
BglI GCCNNNNNGGC 1 cut(s) 1006
BglII AGATCT 1 cut(s) 127
BisI GCNGC 2 cut(s) 18, 1143
BlpI GCTNAGC 2 cut(s) 414, 1118
BlsI GCNGC 2 cut(s) 19, 1144
BmcAI AGTACT 3 cut(s) 1035, 1448, 1508
Bme1390I CCNGG 1 cut(s) 327
BmeT110I CYCGRG 1 cut(s) 1442
BmrFI CCNGG 1 cut(s) 327
BpiI GAAGAC 3 cut(s) 263, 285, 1479
BpmI CTGGAG 1 cut(s) 309
Bpu10I CCTNAGC 1 cut(s) 1109
Bpu1102I GCTNAGC 2 cut(s) 414, 1118
BpuEI CTTGAG 2 cut(s) 319, 1409
BsaBI GATNNNNATC 1 cut(s) 597
BsaHI GRCGYC 1 cut(s) 20
BsaJI CCNNGG 5 cut(s) 12, 99, 374, 399, 1418
Bsc4I CCNNNNNNNGG 3 cut(s) 111, 326, 916
Bse1I ACTGG 2 cut(s) 221, 1514
Bse21I CCTNAGG 5 cut(s) 36, 180, 534, 552, 570
Bse8I GATNNNNATC 1 cut(s) 597
BseBI CCWGG 1 cut(s) 327
BseDI CCNNGG 5 cut(s) 12, 99, 374, 399, 1418
BseGI GGATG 1 cut(s) 973
BseJI GATNNNNATC 1 cut(s) 597
BseLI CCNNNNNNNGG 3 cut(s) 111, 326, 916
BseNI ACTGG 2 cut(s) 221, 1514
BseRI GAGGAG 2 cut(s) 130, 281
BseSI GKGCMC 1 cut(s) 140
BseXI GCAGC 1 cut(s) 1129
Bsh1236I CGCG 1 cut(s) 71
BshFI GGCC 4 cut(s) 98, 104, 205, 442
BsiHKAI GWGCWC 1 cut(s) 802
BsiHKCI CYCGRG 1 cut(s) 1442
BslI CCNNNNNNNGG 3 cut(s) 111, 326, 916
BsmAI GTCTC 1 cut(s) 1445
BsmBI CGTCTC 1 cut(s) 1445
BsnI GGCC 4 cut(s) 98, 104, 205, 442
BsoBI CYCGRG 1 cut(s) 1442
Bsp1286I GDGCHC 3 cut(s) 140, 802, 1257
Bsp1720I GCTNAGC 2 cut(s) 414, 1118
Bsp19I CCATGG 2 cut(s) 99, 1418
BspACI CCGC 3 cut(s) 17, 58, 71
BspANI GGCC 4 cut(s) 98, 104, 205, 442
BspFNI CGCG 1 cut(s) 71
BspPI GGATC 7 cut(s) 23, 230, 425, 753, 1063, 1302, 1407
BsrI ACTGG 2 cut(s) 221, 1514
BssECI CCNNGG 5 cut(s) 12, 99, 374, 399, 1418
BssNI GRCGYC 1 cut(s) 20
BssSI CACGAG 1 cut(s) 588
BssT1I CCWWGG 4 cut(s) 99, 374, 399, 1418
Bst2BI CACGAG 1 cut(s) 588
Bst2UI CCWGG 1 cut(s) 327
Bst4CI ACNGT 3 cut(s) 341, 625, 1516
Bst6I CTCTTC 3 cut(s) 677, 1194, 1478
BstACI GRCGYC 1 cut(s) 20
BstC8I GCNNGC 3 cut(s) 713, 907, 998
BstDSI CCRYGG 2 cut(s) 99, 1418
BstF5I GGATG 1 cut(s) 973
BstFNI CGCG 1 cut(s) 71
BstHHI GCGC 1 cut(s) 71
BstMAI GTCTC 1 cut(s) 1445
BstMWI GCNNNNNNNGC 6 cut(s) 410, 448, 717, 1006, 1114, 1151
BstNI CCWGG 1 cut(s) 327
BstNSI RCATGY 3 cut(s) 909, 1000, 1322
BstSCI CCNGG 1 cut(s) 325
BstSFI CTRYAG 1 cut(s) 472
BstSLI GKGCMC 1 cut(s) 140
BstUI CGCG 1 cut(s) 71
BstV1I GCAGC 1 cut(s) 1129
BstV2I GAAGAC 3 cut(s) 263, 285, 1479
BstX2I RGATCY 2 cut(s) 127, 1294
BstYI RGATCY 2 cut(s) 127, 1294
Bsu36I CCTNAGG 5 cut(s) 36, 180, 534, 552, 570
BsuRI GGCC 4 cut(s) 98, 104, 205, 442
BtgI CCRYGG 2 cut(s) 99, 1418
BtsCI GGATG 1 cut(s) 973
BtsIMutI CAGTG 1 cut(s) 1521
Cac8I GCNNGC 3 cut(s) 713, 907, 998
CfoI GCGC 1 cut(s) 71
CseI GACGC 3 cut(s) 9, 717, 1427
Csp6I GTAC 3 cut(s) 1034, 1447, 1507
CspCI CAANNNNNGTGG 2 cut(s) 1063, 1098
CviAII CATG 9 cut(s) 100, 483, 906, 911, 997, 1209, 1319, 1403, 1419
CviQI GTAC 3 cut(s) 1034, 1447, 1507
DraI TTTAAA 1 cut(s) 1359
EaeI YGGCCR 2 cut(s) 102, 440
Eam1104I CTCTTC 3 cut(s) 677, 1194, 1478
EarI CTCTTC 3 cut(s) 677, 1194, 1478
Ecl136II GAGCTC 1 cut(s) 800
Eco130I CCWWGG 4 cut(s) 99, 374, 399, 1418
Eco147I AGGCCT 1 cut(s) 205
Eco24I GRGCYC 2 cut(s) 802, 1257
Eco53kI GAGCTC 1 cut(s) 800
Eco57I CTGAAG 2 cut(s) 537, 915
Eco81I CCTNAGG 5 cut(s) 36, 180, 534, 552, 570
Eco88I CYCGRG 1 cut(s) 1442
EcoICRI GAGCTC 1 cut(s) 800
EcoRII CCWGG 1 cut(s) 325
EcoT14I CCWWGG 4 cut(s) 99, 374, 399, 1418
EcoT38I GRGCYC 2 cut(s) 802, 1257
ErhI CCWWGG 4 cut(s) 99, 374, 399, 1418
Esp3I CGTCTC 1 cut(s) 1445
FaeI CATG 9 cut(s) 103, 486, 909, 914, 1000, 1212, 1322, 1406, 1422
FatI CATG 9 cut(s) 99, 482, 905, 910, 996, 1208, 1318, 1402, 1418
FbaI TGATCA 1 cut(s) 598
FblI GTMKAC 1 cut(s) 157
Fnu4HI GCNGC 2 cut(s) 18, 1143
FokI GGATG 1 cut(s) 980
FriOI GRGCYC 2 cut(s) 802, 1257
Fsp4HI GCNGC 2 cut(s) 18, 1143
FspBI CTAG 5 cut(s) 405, 989, 1313, 1341, 1543
GlaI GCGC 1 cut(s) 70
GluI GCNGC 2 cut(s) 18, 1143
GsuI CTGGAG 1 cut(s) 309
HaeIII GGCC 4 cut(s) 98, 104, 205, 442
HgaI GACGC 3 cut(s) 9, 717, 1427
HhaI GCGC 1 cut(s) 71
Hin1I GRCGYC 1 cut(s) 20
Hin1II CATG 9 cut(s) 103, 486, 909, 914, 1000, 1212, 1322, 1406, 1422
Hin6I GCGC 1 cut(s) 69
HinP1I GCGC 1 cut(s) 69
HinfI GANTC 3 cut(s) 313, 332, 379
HphI GGTGA 4 cut(s) 38, 341, 362, 1097
Hpy166II GTNNAC 6 cut(s) 158, 370, 637, 767, 851, 1088
Hpy8I GTNNAC 6 cut(s) 158, 370, 637, 767, 851, 1088
Hpy99I CGWCG 2 cut(s) 25, 387
HpyAV CCTTC 6 cut(s) 142, 192, 939, 986, 1322, 1532
HpyCH4III ACNGT 3 cut(s) 341, 625, 1516
HpyCH4IV ACGT 1 cut(s) 639
HpyCH4V TGCA 4 cut(s) 290, 1030, 1145, 1322
HpyF10VI GCNNNNNNNGC 6 cut(s) 410, 448, 717, 1006, 1114, 1151
HpySE526I ACGT 1 cut(s) 639
Hsp92I GRCGYC 1 cut(s) 20
Hsp92II CATG 9 cut(s) 103, 486, 909, 914, 1000, 1212, 1322, 1406, 1422
HspAI GCGC 1 cut(s) 69
Ksp22I TGATCA 1 cut(s) 598
LmnI GCTCC 2 cut(s) 328, 797
Lsp1109I GCAGC 1 cut(s) 1129
MaeI CTAG 5 cut(s) 405, 989, 1313, 1341, 1543
MaeII ACGT 1 cut(s) 639
MaeIII GTNAC 1 cut(s) 980
MflI RGATCY 2 cut(s) 127, 1294
MhlI GDGCHC 3 cut(s) 140, 802, 1257
MlsI TGGCCA 2 cut(s) 104, 442
MluNI TGGCCA 2 cut(s) 104, 442
MlyI GAGTC 1 cut(s) 341
MmeI TCCRAC 1 cut(s) 360
Mox20I TGGCCA 2 cut(s) 104, 442
MroXI GAANNNNTTC 2 cut(s) 696, 1457
MscI TGGCCA 2 cut(s) 104, 442
MseI TTAA 1 cut(s) 1358
MslI CAYNNNNRTG 2 cut(s) 740, 966
Msp20I TGGCCA 2 cut(s) 104, 442
MspA1I CMGCKG 1 cut(s) 58
MspR9I CCNGG 1 cut(s) 327
MvaI CCWGG 1 cut(s) 327
MvnI CGCG 1 cut(s) 71
MwoI GCNNNNNNNGC 6 cut(s) 410, 448, 717, 1006, 1114, 1151
NcoI CCATGG 2 cut(s) 99, 1418
NlaIII CATG 9 cut(s) 103, 486, 909, 914, 1000, 1212, 1322, 1406, 1422
NspI RCATGY 3 cut(s) 909, 1000, 1322
PaeI GCATGC 2 cut(s) 909, 1000
PaeR7I CTCGAG 1 cut(s) 1442
PceI AGGCCT 1 cut(s) 205
PdmI GAANNNNTTC 2 cut(s) 696, 1457
PfeI GAWTC 2 cut(s) 313, 379
PflMI CCANNNNNTGG 1 cut(s) 916
PkrI GCNGC 2 cut(s) 19, 1144
PleI GAGTC 1 cut(s) 340
PpsI GAGTC 1 cut(s) 340
Psp124BI GAGCTC 1 cut(s) 802
Psp1406I AACGTT 1 cut(s) 639
Psp6I CCWGG 1 cut(s) 325
PspGI CCWGG 1 cut(s) 325
PsuI RGATCY 2 cut(s) 127, 1294
RsaI GTAC 3 cut(s) 1035, 1448, 1508
RsaNI GTAC 3 cut(s) 1034, 1447, 1507
RseI CAYNNNNRTG 2 cut(s) 740, 966
SacI GAGCTC 1 cut(s) 802
SaqAI TTAA 1 cut(s) 1358
SatI GCNGC 2 cut(s) 18, 1143
ScaI AGTACT 3 cut(s) 1035, 1448, 1508
SchI GAGTC 1 cut(s) 341
ScrFI CCNGG 1 cut(s) 327
SduI GDGCHC 3 cut(s) 140, 802, 1257
SfcI CTRYAG 1 cut(s) 472
Sfr274I CTCGAG 1 cut(s) 1442
SlaI CTCGAG 1 cut(s) 1442
SmiMI CAYNNNNRTG 2 cut(s) 740, 966
SmlI CTYRAG 3 cut(s) 298, 1388, 1442
SmoI CTYRAG 3 cut(s) 298, 1388, 1442
SphI GCATGC 2 cut(s) 909, 1000
SseBI AGGCCT 1 cut(s) 205
SsiI CCGC 3 cut(s) 17, 58, 71
SspMI CTAG 5 cut(s) 405, 989, 1313, 1341, 1543
SstI GAGCTC 1 cut(s) 802
StuI AGGCCT 1 cut(s) 205
StyD4I CCNGG 1 cut(s) 325
StyI CCWWGG 4 cut(s) 99, 374, 399, 1418
TaaI ACNGT 3 cut(s) 341, 625, 1516
TaiI ACGT 1 cut(s) 642
TaqI TCGA 7 cut(s) 84, 423, 429, 467, 894, 1259, 1443
TatI WGTACW 3 cut(s) 1033, 1446, 1506
TauI GCSGC 1 cut(s) 20
TfiI GAWTC 2 cut(s) 313, 379
Tru1I TTAA 1 cut(s) 1358
Tru9I TTAA 1 cut(s) 1358
TscAI CASTG 1 cut(s) 1521
TseI GCWGC 1 cut(s) 1142
TspDTI ATGAA 3 cut(s) 226, 471, 1450
TspGWI ACGGA 1 cut(s) 155
TspRI CASTG 1 cut(s) 1521
Van91I CCANNNNNTGG 1 cut(s) 916
XapI RAATTY 9 cut(s) 7, 78, 583, 888, 1228, 1262, 1279, 1354, 1489
XceI RCATGY 3 cut(s) 909, 1000, 1322
XhoI CTCGAG 1 cut(s) 1442
XmiI GTMKAC 1 cut(s) 157
XmnI GAANNNNTTC 2 cut(s) 696, 1457
XspI CTAG 5 cut(s) 405, 989, 1313, 1341, 1543
ZrmI AGTACT 3 cut(s) 1035, 1448, 1508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.